| scholarly article | Q13442814 |
| P50 | author | Valérie de Crécy-Lagard | Q84288090 |
| Christian Marck | Q115630541 | ||
| Henri Grosjean | Q115630545 | ||
| P2093 | author name string | Wayne A Decatur | |
| Christine Gaspin | |||
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| Modified view of tRNA: stability amid sequence diversity | Q36373839 | ||
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| Methyltransferase That Modifies Guanine 966 of the 16 S rRNA: FUNCTIONAL IDENTIFICATION AND TERTIARY STRUCTURE | Q27640940 | ||
| The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold | Q27734665 | ||
| Functional profiling of the Saccharomyces cerevisiae genome | Q27860544 | ||
| Structure of the 70S ribosome complexed with mRNA and tRNA | Q27860602 | ||
| Novel methyltransferase for modified uridine residues at the wobble position of tRNA. | Q27931852 | ||
| Multisite-specific tRNA:m5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: identification of the gene and substrate specificity of the enzyme | Q27931953 | ||
| Functional redundancy of Spb1p and a snR52-dependent mechanism for the 2'-O-ribose methylation of a conserved rRNA position in yeast. | Q27932027 | ||
| Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage | Q27932570 | ||
| Elevated levels of two tRNA species bypass the requirement for elongator complex in transcription and exocytosis. | Q27934002 | ||
| A conserved modified wobble nucleoside (mcm5s2U) in lysyl-tRNA is required for viability in yeast | Q27934519 | ||
| An early step in wobble uridine tRNA modification requires the Elongator complex | Q27934531 | ||
| An adenosine deaminase that generates inosine at the wobble position of tRNAs | Q27936395 | ||
| The Saccharomyces cerevisiae TAN1 gene is required for N4-acetylcytidine formation in tRNA | Q27937241 | ||
| Characterization of yeast protein Deg1 as pseudouridine synthase (Pus3) catalyzing the formation of psi 38 and psi 39 in tRNA anticodon loop. | Q27937456 | ||
| A novel methyltransferase required for the formation of the hypermodified nucleoside wybutosine in eucaryotic tRNA. | Q27937798 | ||
| Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes | Q27939264 | ||
| Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2. | Q27939647 | ||
| Novel predicted RNA-binding domains associated with the translation machinery | Q27939664 | ||
| The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of psi55 in both mitochondrial and cytoplasmic tRNAs | Q27939838 | ||
| Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes | Q28139917 | ||
| tRNA transfers to the limelight | Q28203809 | ||
| The expanding snoRNA world | Q28216313 | ||
| A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea, and eukarya | Q34198430 | ||
| A guided tour: small RNA function in Archaea | Q34255366 | ||
| An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA. | Q34267562 | ||
| Purification, cloning, and properties of the tRNA psi 55 synthase from Escherichia coli. | Q34289435 | ||
| A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase | Q34291797 | ||
| N2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine-dependent methyltransferase, conserved in Archaea and Eukaryota | Q34328358 | ||
| Methylation of 23S rRNA nucleotide G745 is a secondary function of the RlmAI methyltransferase | Q34351361 | ||
| Identification of BHB splicing motifs in intron-containing tRNAs from 18 archaea: evolutionary implications | Q34365430 | ||
| The Cm56 tRNA modification in archaea is catalyzed either by a specific 2'-O-methylase, or a C/D sRNP. | Q34366474 | ||
| Effects of nucleotide substitution and modification on the stability and structure of helix 69 from 28S rRNA | Q34366569 | ||
| Recognition of a complex substrate by the KsgA/Dim1 family of enzymes has been conserved throughout evolution | Q34502544 | ||
| Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements | Q34564885 | ||
| Transfer RNA modification enzymes from Pyrococcus furiosus: detection of the enzymatic activities in vitro | Q34698845 | ||
| Pseudouridylation of helix 69 of 23S rRNA is necessary for an effective translation termination | Q34717123 | ||
| A novel enzymatic pathway leading to 1-methylinosine modification in Haloferax volcanii tRNA. | Q34778281 | ||
| Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA. | Q54579295 | ||
| Effects of unusual polyamines on phenylalanyl-tRNA formation. | Q54634532 | ||
| Sequential 2′-O-Methylation of Archaeal Pre-tRNATrpNucleotides Is Guided by the Intron-encoded buttrans-Acting Box C/D Ribonucleoprotein of Pre-tRNA | Q60451218 | ||
| A Sparsomycin-resistant Mutant ofHalobacterium salinariumLacks a Modification at Nucleotide U2603 in the Peptidyl Transferase Centre of 23 S rRNA | Q61862594 | ||
| Conformational rigidity of specific pyrimidine residues in tRNA arises from posttranscriptional modifications that enhance steric interaction between the base and the 2'-hydroxyl group | Q67485901 | ||
| Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry | Q67684207 | ||
| Conformational characteristics of 4-acetylcytidine found in tRNA | Q69420229 | ||
| Clustering of modified nucleotides at the functional center of bacterial ribosomal RNA | Q70535951 | ||
| 5S rRNA modification in the hyperthermophilic archaea Sulfolobus solfataricus and Pyrodictium occultum | Q70535963 | ||
| Identification of bases in 16S rRNA essential for tRNA binding at the 30S ribosomal P site | Q71666175 | ||
| Effects of novel polyamines on cell-free polypeptide synthesis catalyzed by Thermus thermophilus HB8 extract | Q72694963 | ||
| Base-pairing between 23S rRNA and tRNA in the ribosomal A site | Q73319634 | ||
| rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity | Q80407834 | ||
| A conserved rRNA methyltransferase regulates ribosome biogenesis | Q81026237 | ||
| Sequence of the 16S Ribosomal RNA from Halobacterium volcanii, an Archaebacterium | Q81044784 | ||
| Comparative RNomics and modomics in Mollicutes: prediction of gene function and evolutionary implications | Q81243788 | ||
| Identification and role of functionally important motifs in the 970 loop of Escherichia coli 16S ribosomal RNA. | Q36488843 | ||
| Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping | Q36503772 | ||
| The conserved Wobble uridine tRNA thiolase Ctu1-Ctu2 is required to maintain genome integrity | Q36535553 | ||
| Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs | Q36649634 | ||
| tRNA's modifications bring order to gene expression | Q36691478 | ||
| Dynamic guide-target interactions contribute to sequential 2'-O-methylation by a unique archaeal dual guide box C/D sRNP. | Q36740735 | ||
| Expanding the nucleotide repertoire of the ribosome with post-transcriptional modifications | Q36874021 | ||
| A dedicated computational approach for the identification of archaeal H/ACA sRNAs | Q36900542 | ||
| Structure, dynamics, and function of RNA modification enzymes | Q37186023 | ||
| Structural Insights into ribosome recycling factor interactions with the 70S ribosome | Q37266828 | ||
| In vitro RNP assembly and methylation guide activity of an unusual box C/D RNA, cis-acting archaeal pre-tRNA(Trp). | Q37371295 | ||
| Temperature-dependent biosynthesis of 2-thioribothymidine of Thermus thermophilus tRNA. | Q38318304 | ||
| The importance of highly conserved nucleotides in the binding region of chloramphenicol at the peptidyl transfer centre of Escherichia coli 23S ribosomal RNA. | Q38346185 | ||
| The RNA Modification Database: 1999 update | Q38548527 | ||
| The RNA modification database--1998. | Q38554658 | ||
| Universal rules and idiosyncratic features in tRNA identity | Q39725604 | ||
| Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons | Q40240795 | ||
| Formation of thiolated nucleosides present in tRNA from Salmonella enterica serovar Typhimurium occurs in two principally distinct pathways. | Q40469099 | ||
| Structural features of the hisT operon of Escherichia coli K-12. | Q40471132 | ||
| Modification of tRNA as a regulatory device | Q40489572 | ||
| Sequence-structure-function studies of tRNA:m5C methyltransferase Trm4p and its relationship to DNA:m5C and RNA:m5U methyltransferases | Q40899850 | ||
| The role of the minor base N4-acetylcytidine in the function of the Escherichia coli noninitiator methionine transfer RNA | Q40922571 | ||
| The importance of being modified: roles of modified nucleosides and Mg2+ in RNA structure and function. | Q40998399 | ||
| Post-transcriptional modification mapping in the Clostridium acetobutylicum 16S rRNA by mass spectrometry and reverse transcriptase assays | Q41815823 | ||
| Number, position, and significance of the pseudouridines in the large subunit ribosomal RNA of Haloarcula marismortui and Deinococcus radiodurans | Q41858766 | ||
| The bipartite structure of the tRNA m1A58 methyltransferase from S. cerevisiae is conserved in humans | Q41869952 | ||
| New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. | Q41899715 | ||
| The modified wobble nucleoside uridine-5-oxyacetic acid in tRNAPro(cmo5UGG) promotes reading of all four proline codons in vivo | Q41991276 | ||
| Definition of bases in 23S rRNA essential for ribosomal subunit association | Q42131178 | ||
| Post-transcriptional modifications in the small subunit ribosomal RNA from Thermotoga maritima, including presence of a novel modified cytidine | Q42285636 | ||
| Dissection of 16S rRNA methyltransferase (KsgA) function in Escherichia coli | Q42910474 | ||
| pH-dependent structural changes of helix 69 from Escherichia coli 23S ribosomal RNA. | Q42920848 | ||
| Ion metabolism in a Halobacterium. I. Influence of age of culture on intracellular concentrations | Q42957843 | ||
| Halobacterium volcanii spec. nov., a Dead Sea halobacterium with a moderate salt requirement | Q43016121 | ||
| Influence of phylogeny on posttranscriptional modification of rRNA in thermophilic prokaryotes: the complete modification map of 16S rRNA of Thermus thermophilus | Q43020097 | ||
| Codon assignments and fidelity of translation in a cell-free protein-synthesizing system from an extremely halophilic bacterium | Q43020571 | ||
| Maturation of the 5S rRNA 5' end is catalyzed in vitro by the endonuclease tRNase Z in the archaeon H. volcanii | Q43024327 | ||
| The 3D rRNA modification maps database: with interactive tools for ribosome analysis | Q43032876 | ||
| Distinct origins of tRNA(m1G37) methyltransferase | Q44912617 | ||
| A novel dCMP methylase by engineering thymidylate synthase | Q46137580 | ||
| Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA. | Q46428807 | ||
| Two different mechanisms for tRNA ribose methylation in Archaea: a short survey | Q46705162 | ||
| Crystal structure of the putative RNA methyltransferase PH1948 from Pyrococcus horikoshii, in complex with the copurified S-adenosyl-L-homocysteine | Q46770752 | ||
| Acquisition of a bacterial RumA-type tRNA(uracil-54, C5)-methyltransferase by Archaea through an ancient horizontal gene transfer | Q46857737 | ||
| Differential roles of archaeal box H/ACA proteins in guide RNA-dependent and independent pseudouridine formation | Q46906982 | ||
| A novel lysine-substituted nucleoside in the first position of the anticodon of minor isoleucine tRNA from Escherichia coli | Q48319663 | ||
| Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs. | Q48388228 | ||
| Searching RNA motifs and their intermolecular contacts with constraint networks | Q48440440 | ||
| Identities and phylogenetic comparisons of posttranscriptional modifications in 16 S ribosomal RNA from Haloferax volcanii. | Q52579182 | ||
| Pseudouridine synthases | Q28274734 | ||
| Optimization of ribosome structure and function by rRNA base modification | Q28469110 | ||
| rRNA modifications and ribosome function | Q28610126 | ||
| tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features | Q28768508 | ||
| TRAM, a predicted RNA-binding domain, common to tRNA uracil methylation and adenine thiolation enzymes | Q30168263 | ||
| Role of 16S ribosomal RNA methylations in translation initiation in Escherichia coli | Q30481537 | ||
| Posttranscriptional modifications in the A-loop of 23S rRNAs from selected archaea and eubacteria | Q30827747 | ||
| The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions | Q31132964 | ||
| Yeast 18S rRNA dimethylase Dim1p: a quality control mechanism in ribosome synthesis? | Q32075110 | ||
| Mapping posttranscriptional modifications in 5S ribosomal RNA by MALDI mass spectrometry | Q33179825 | ||
| The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus | Q33212636 | ||
| The archaeon Haloarcula marismortui has few modifications in the central parts of its 23S ribosomal RNA. | Q33213973 | ||
| Small non-coding RNAs in Archaea | Q33226201 | ||
| Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity | Q33240227 | ||
| YebU is a m5C methyltransferase specific for 16 S rRNA nucleotide 1407. | Q33242538 | ||
| Regulated polyploidy in halophilic archaea | Q33267353 | ||
| Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases | Q33276931 | ||
| Archease from Pyrococcus abyssi improves substrate specificity and solubility of a tRNA m5C methyltransferase | Q33283272 | ||
| RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP | Q33826941 | ||
| Purification, cloning, and characterization of the 16S RNA m5C967 methyltransferase from Escherichia coli | Q33852617 | ||
| Identification of the 16S rRNA m5C967 methyltransferase from Escherichia coli | Q33857959 | ||
| Characterisation and enzymatic properties of tRNA(guanine 26, N (2), N (2))-dimethyltransferase (Trm1p) from Pyrococcus furiosus | Q33870203 | ||
| The MicrobesOnline Web site for comparative genomics | Q33891885 | ||
| The FtsJ/RrmJ heat shock protein of Escherichia coli is a 23 S ribosomal RNA methyltransferase | Q33896727 | ||
| Hypermodification of tRNA in Thermophilic archaea. Cloning, overexpression, and characterization of tRNA-guanine transglycosylase from Methanococcus jannaschii | Q33906515 | ||
| Decoding the genome: a modified view | Q33975049 | ||
| Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp | Q33988569 | ||
| In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex | Q34024413 | ||
| The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles | Q34057760 | ||
| Summary: the modified nucleosides of RNA. | Q34057777 | ||
| tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli | Q34089639 | ||
| Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification | Q34164307 | ||
| Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center | Q34181714 | ||
| Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures | Q34189145 | ||
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Archaea | Q10872 |
| Haloferax volcanii | Q16982678 | ||
| P304 | page(s) | 470 | |
| P577 | publication date | 2008-10-09 | |
| P1433 | published in | BMC Genomics | Q15765854 |
| P1476 | title | RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes | |
| P478 | volume | 9 |
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| Q38164814 | Functional implications of ribosomal RNA methylation in response to environmental stress. |
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| Q33931101 | Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi. |
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