| scholarly article | Q13442814 |
| P50 | author | Joseph T Wade | Q57033250 |
| P2093 | author name string | Virgil A Rhodius | |
| P2860 | cites work | A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells | Q22066257 |
| Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays | Q24537785 | ||
| Significance analysis of microarrays applied to the ionizing radiation response | Q24606608 | ||
| MEME: discovering and analyzing DNA and protein sequence motifs | Q24680110 | ||
| Limitations and potentials of current motif discovery algorithms | Q24811129 | ||
| Conserved and variable functions of the sigmaE stress response in related genomes | Q24811266 | ||
| ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data | Q24813756 | ||
| DAVID: Database for Annotation, Visualization, and Integrated Discovery | Q27499374 | ||
| Global analysis of protein localization in budding yeast | Q27653962 | ||
| Transcriptional regulatory code of a eukaryotic genome | Q27933887 | ||
| Effects of atmospheric ozone on microarray data quality | Q28186263 | ||
| Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress | Q28250175 | ||
| Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation | Q28286620 | ||
| An efficient recombination system for chromosome engineering in Escherichia coli | Q29615038 | ||
| Identifying DNA and protein patterns with statistically significant alignments of multiple sequences | Q29615307 | ||
| Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment | Q29615323 | ||
| Interaction network containing conserved and essential protein complexes in Escherichia coli | Q29615776 | ||
| Quenching of microbial samples for increased reliability of microarray data | Q30993062 | ||
| W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data | Q31149014 | ||
| Elimination of laboratory ozone leads to a dramatic improvement in the reproducibility of microarray gene expression measurements | Q33273457 | ||
| Epitope tagging of chromosomal genes in Salmonella | Q33953109 | ||
| Analysis of DNA microarrays using algorithms that employ rule-based expert knowledge | Q34012405 | ||
| Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites | Q34116983 | ||
| Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome. | Q34201883 | ||
| The transcription factor Ifh1 is a key regulator of yeast ribosomal protein genes. | Q34379346 | ||
| Identification of bacterial small non-coding RNAs: experimental approaches | Q34635147 | ||
| Next-generation sequencing transforms today's biology | Q34731728 | ||
| Integrating regulatory motif discovery and genome-wide expression analysis | Q34869275 | ||
| Microarray-based analysis of microbial community RNAs by whole-community RNA amplification. | Q35633445 | ||
| ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments | Q35676599 | ||
| Genetic reconstruction of a functional transcriptional regulatory network | Q38302919 | ||
| BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. | Q38303029 | ||
| High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons. | Q38303172 | ||
| Transcription activation at the Escherichia coli melAB promoter: the role of MelR and the cyclic AMP receptor protein | Q38313403 | ||
| Genomic studies with Escherichia coli MelR protein: applications of chromatin immunoprecipitation and microarrays. | Q38335816 | ||
| Characterizing gene sets with FuncAssociate | Q38522379 | ||
| Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells | Q40190617 | ||
| PCR-based tandem epitope tagging system for Escherichia coli genome engineering | Q46204807 | ||
| Improving promoter prediction for the NNPP2.2 algorithm: a case study using Escherichia coli DNA sequences. | Q50766309 | ||
| The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting. | Q54450677 | ||
| Extensive functional overlap between sigma factors in Escherichia coli. | Q54458231 | ||
| The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo. | Q54489970 | ||
| Microarray data analysis: from hypotheses to conclusions using gene expression data. | Q54877608 | ||
| P4510 | describes a project that uses | DNA microarray | Q591745 |
| P433 | issue | 1 | |
| P304 | page(s) | 63-72 | |
| P577 | publication date | 2008-10-26 | |
| P1433 | published in | Methods | Q6823859 |
| P1476 | title | Technical considerations in using DNA microarrays to define regulons | |
| P478 | volume | 47 |
| Q34993065 | "Non-canonical protein-DNA interactions identified by ChIP are not artifacts": response. |
| Q27316883 | Ethanolamine Signaling Promotes Salmonella Niche Recognition and Adaptation during Infection |
| Q37545645 | Genome-scale analyses of Escherichia coli and Salmonella enterica AraC reveal noncanonical targets and an expanded core regulon |
| Q37643366 | Identification of HilD-regulated genes in Salmonella enterica serovar Typhimurium. |
| Q36684736 | Nanobody(R)-based chromatin immunoprecipitation/micro-array analysis for genome-wide identification of transcription factor DNA binding sites |
| Q35271822 | Unexpected stress-reducing effect of PhaP, a poly(3-hydroxybutyrate) granule-associated protein, in Escherichia coli |
| Q33907606 | Using DNA microarrays to assay part function |
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