Identification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry

scientific article published on 20 October 2008

Identification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1074/MCP.M800232-MCP200
P932PMC publication ID2649805
P698PubMed publication ID18936057

P2093author name stringGerhard R Munske
James E Bruce
Xiaoting Tang
Gordon A Anderson
Haizhen Zhang
Nikola Tolic
P2860cites workA physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathwayQ21735927
Self-assembling protein microarraysQ24298468
A novel genetic system to detect protein-protein interactionsQ27860915
A generic protein purification method for protein complex characterization and proteome explorationQ27861087
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometryQ27861116
An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network.Q27933467
The tandem affinity purification (TAP) method: a general procedure of protein complex purificationQ28131621
Large-scale analysis of the yeast proteome by multidimensional protein identification technologyQ28131778
Dual Electrospray Ionization Source for Confident Generation of Accurate Mass Tags Using Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass SpectrometryQ47432145
Ten thousand interactions for the molecular biologistQ57881168
Utility of Accurate Mass Tags for Proteome-Wide Protein IdentificationQ58069270
Chemical probes of extended biological structures: synthesis and properties of the cleavable protein cross-linking reagent [35S]dithiobis(succinimidyl propionate)Q67792905
Mass spectrometry identifiable cross-linking strategy for studying protein-protein interactionsQ81207959
Time-controlled transcardiac perfusion cross-linking for the study of protein interactions in complex tissuesQ28262008
A keratin cytoskeletal protein regulates protein synthesis and epithelial cell growthQ28592102
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagentsQ29547450
Comparative assessment of large-scale data sets of protein-protein interactionsQ29547451
Chemical cross-linking and mass spectrometry for protein structural modeling.Q30333242
Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions.Q30352951
Chemical cross-linking with thiol-cleavable reagents combined with differential mass spectrometric peptide mapping--a novel approach to assess intermolecular protein contactsQ30919410
Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processingQ31058321
A modular cross-linking approach for exploring protein interactionsQ31132902
Mapping protein interfaces by a trifunctional cross-linker combined with MALDI-TOF and ESI-FTICR mass spectrometryQ33225858
Mass spectrometry-based functional proteomics: from molecular machines to protein networksQ33300676
Space charge effects in Fourier transform mass spectrometry. Mass calibrationQ34262826
Mapping Polycomb-repressed domains in the bithorax complex using in vivo formaldehyde cross-linked chromatinQ34321793
Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1Q34540409
Bioinformatics of large-scale protein interaction networks.Q34572356
Analysis of protein complexes using mass spectrometryQ34642068
Protein chip technologyQ35053334
Advances in protein complex analysis using mass spectrometryQ35990045
Characterization of protein-protein interactions involved in iron reduction by Shewanella oneidensis MR-1.Q36136756
Identification and mapping of protein-protein interactions by a combination of cross-linking, cleavage, and proteomicsQ36200132
Protein characterization of Saccharomyces cerevisiae RNA polymerase II after in vivo cross-linkingQ36288964
Emerging tools for real-time label-free detection of interactions on functional protein microarraysQ36302894
Structural systems biology: modelling protein interactions.Q36404152
Mapping protein-protein interactions by mass spectrometryQ36528127
The use of a hybrid linear trap/FT-ICR mass spectrometer for on-line high resolution/high mass accuracy bottom-up sequencing.Q36537284
Quantitative evaluation of the lengths of homobifunctional protein cross-linking reagents used as molecular rulersQ36640538
Informatics strategies for large-scale novel cross-linking analysisQ36777522
Methods for the detection and analysis of protein-protein interactionsQ36886214
Chemical cross-linking and mass spectrometry as structure determination toolsQ36946407
In vivo identification of the outer membrane protein OmcA-MtrC interaction network in Shewanella oneidensis MR-1 cells using novel hydrophobic chemical cross-linkersQ36978992
Identification of cross-linked peptides from large sequence databasesQ37286234
Identification of protein-protein interactions using in vivo cross-linking and mass spectrometryQ40493018
Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteomeQ40829773
Analysis of chromatin structure by in vivo formaldehyde cross-linking.Q41132202
Profiling the membrane proteome of Shewanella oneidensis MR-1 with new affinity labeling probesQ42424456
A proteomic approach identifies proteins in hepatocytes that bind nascent apolipoprotein B.Q43948878
A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivocross-linkingQ46181926
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectmass spectrometryQ180809
protein-protein interactionQ896177
P304page(s)409-420
P577publication date2008-10-20
P1433published inMolecular & Cellular ProteomicsQ6895932
P1476titleIdentification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry
P478volume8

Reverse relations

cites work (P2860)
Q58090255A cross-linking/mass spectrometry workflow based on MS-cleavable cross-linkers and the MeroX software for studying protein structures and protein-protein interactions
Q38222149A mass spectrometry view of stable and transient protein interactions
Q44553618A negative ion mass spectrometry approach to identify cross-linked peptides utilizing characteristic disulfide fragmentations
Q34788360A new cross-linking strategy: protein interaction reporter (PIR) technology for protein-protein interaction studies
Q40279546A photocleavable and mass spectrometry identifiable cross-linker for protein interaction studies
Q36848174Analysis of secondary structure in proteins by chemical cross-linking coupled to MS.
Q88647728Bifunctional cross-linking approaches for mass spectrometry-based investigation of nucleic acids and protein-nucleic acid assemblies
Q37958585Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links
Q38216441Catch me if you can: challenges and applications of cross-linking approaches
Q52901808Click and release: fluoride cleavable linker for mild bioorthogonal separation.
Q37687436Combinatorial approach for large-scale identification of linked peptides from tandem mass spectrometry spectra
Q34980210Conformational States of macromolecular assemblies explored by integrative structure calculation.
Q46525686Cross-Linking Mass Spectrometry: An Emerging Technology for Interactomics and Structural Biology.
Q37229497Cross-linking and mass spectrometry methodologies to facilitate structural biology: finding a path through the maze
Q35497403Cross-linking measurements of in vivo protein complex topologies
Q36109023Cross-linking measurements of the Potato leafroll virus reveal protein interaction topologies required for virion stability, aphid transmission, and virus-plant interactions
Q37781781Crosslinking combined with mass spectrometry for structural proteomics
Q35846431Designer reagents for mass spectrometry-based proteomics: clickable cross-linkers for elucidation of protein structures and interactions
Q37185015Developing an Acidic Residue Reactive and Sulfoxide-Containing MS-Cleavable Homobifunctional Cross-Linker for Probing Protein-Protein Interactions
Q34454898Development of a Novel Cross-linking Strategy for Fast and Accurate Identification of Cross-linked Peptides of Protein Complexes
Q30400888Development of large-scale cross-linking mass spectrometry
Q30313829Divide and conquer: cleavable cross-linkers to study protein conformation and protein-protein interactions
Q35863291Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography
Q33814289Exploring the molecular mechanisms of electron shuttling across the microbe/metal space
Q35743280Femtosecond UV-laser pulses to unveil protein-protein interactions in living cells
Q90590562GPCR regulation of secretion
Q60961130Genomic Analyses of the Quinol Oxidases and/or Quinone Reductases Involved in Bacterial Extracellular Electron Transfer
Q57143674Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei
Q35835388Host-Microbe Protein Interactions during Bacterial Infection
Q92553050Identification of Cross-linked Peptides Using Isotopomeric Cross-linkers
Q30418939Identification of cross-linked peptides from complex samples.
Q26765391Immunoprecipitation and mass spectrometry defines an extensive RBM45 protein-protein interaction network
Q34479669Improved Strategies for Rapid Identification of Chemically Cross-Linked Peptides Using Protein Interaction Reporter Technology
Q30512707In vivo application of photocleavable protein interaction reporter technology
Q36846728In vivo protein complex topologies: sights through a cross-linking lens
Q37585468In vivo protein interaction network identified with a novel real-time cross-linked peptide identification strategy
Q39454390Integral membrane proteins: bottom-up, top-down and structural proteomics.
Q37862657Isolation and characterization of plant protein complexes by mass spectrometry
Q30373086Kojak: efficient analysis of chemically cross-linked protein complexes.
Q30364926Large Scale Chemical Cross-linking Mass Spectrometry Perspectives.
Q37845324Linking the proteins--elucidation of proteome-scale networks using mass spectrometry
Q41952179Mapping the local protein interactome of the NuA3 histone acetyltransferase
Q38014039Mass spectrometry-based structural proteomics
Q38994437Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry
Q35757866Molecular Underpinnings of Fe(III) Oxide Reduction by Shewanella Oneidensis MR-1.
Q30368727On the efficiency of NHS ester cross-linkers for stabilizing integral membrane protein complexes.
Q38071034Opportunities for protein interaction network-guided cellular engineering
Q30318185Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis
Q30375883Performing protein crosslinking using gas-phase cleavable chemical crosslinkers and liquid chromatography-tandem mass spectrometry.
Q90403898PhoX: An IMAC-Enrichable Cross-Linking Reagent
Q30387550Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics
Q36588488Probing the protein interaction network of Pseudomonas aeruginosa cells by chemical cross-linking mass spectrometry
Q57477440Protein Dynamics in Solution by Quantitative Crosslinking/Mass Spectrometry
Q30399662Protein Footprinting Comes of Age: Mass Spectrometry for Biophysical Structure Assessment
Q30426414Protein interactions, post-translational modifications and topologies in human cells
Q37847240Proteomic tools for the analysis of transient interactions between metalloproteins.
Q36884872Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions
Q42726045Quantification of protein-protein interactions with chemical cross-linking and mass spectrometry
Q47843802Quantitative Multiple-Reaction Monitoring Proteomic Analysis of Gβ and Gγ Subunits in C57Bl6/J Brain Synaptosomes.
Q41854337Quaternary diamines as mass spectrometry cleavable crosslinkers for protein interactions
Q35057799Selective enrichment and identification of azide-tagged cross-linked peptides using chemical ligation and mass spectrometry
Q28251875StavroX--a software for analyzing crosslinked products in protein interaction studies
Q30317718Structural analysis of guanylyl cyclase-activating protein-2 (GCAP-2) homodimer by stable isotope-labeling, chemical cross-linking, and mass spectrometry
Q52656503Synthesis of CID-cleavable protein crosslinking agents containing quaternary amines for structural mass spectrometry.
Q34594861The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes
Q38062785The impact of mass spectrometry on the study of intact antibodies: from post-translational modifications to structural analysis.
Q61797639The in vivo specificity of synaptic Gβ and Gγ subunits to the α adrenergic receptor at CNS synapses
Q30405106Thiol-exchange in DTSSP crosslinked peptides is proportional to cysteine content and precisely controlled in crosslink detection by two-step LC-MALDI MSMS.
Q90301045Tools for 3D Interactome Visualization
Q34193686Topographic studies of the GroEL-GroES chaperonin complex by chemical cross-linking using diformyl ethynylbenzene: the power of high resolution electron transfer dissociation for determination of both peptide sequences and their attachment sites
Q38010660Two steps forward--one step back: advances in affinity purification mass spectrometry of macromolecular complexes
Q41259598Using pLink to Analyze Cross-Linked Peptides
Q98945003Using proteomics to identify host cell interaction partners for VgrG and IglJ
Q38529220XL-MS: Protein cross-linking coupled with mass spectrometry
Q30542937XLink-DB: database and software tools for storing and visualizing protein interaction topology data
Q30397747Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry

Search more.