scholarly article | Q13442814 |
P50 | author | Richard D. Smith | Q7325058 |
Joshua N Adkins | Q38305085 | ||
Nathan Manes | Q42857494 | ||
Saiful M Chowdhury | Q87883041 | ||
M Uljana Mayer | Q117262486 | ||
P2093 | author name string | Xiuxia Du | |
Si Wu | |||
Gordon A Anderson | |||
P2860 | cites work | An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database | Q27861106 |
An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network. | Q27933467 | ||
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search | Q28211385 | ||
Performance characteristics of electron transfer dissociation mass spectrometry | Q28239215 | ||
Proposal for a common nomenclature for sequence ions in mass spectra of peptides | Q28269961 | ||
The collaboratory for MS3D: a new cyberinfrastructure for the structural elucidation of biological macromolecules and their assemblies using mass spectrometry-based approaches | Q28754524 | ||
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry | Q29547311 | ||
Comparative assessment of large-scale data sets of protein-protein interactions | Q29547451 | ||
Intramolecular cross-linking experiments on cytochrome c and ribonuclease A using an isotope multiplet method. | Q30329460 | ||
Chemical cross-linking and mass spectrometry for protein structural modeling. | Q30333242 | ||
Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions. | Q30352951 | ||
Mass spectrometric analysis of cross-linking sites for the structure of proteins and protein complexes. | Q30370735 | ||
Collision-induced dissociative chemical cross-linking reagent for protein structure characterization: applied Edman chemistry in the gas phase. | Q30383051 | ||
Chemical cross-linking and mass spectrometry as a low-resolution protein structure determination technique. | Q30386397 | ||
Protein identification using sequential ion/ion reactions and tandem mass spectrometry | Q30437234 | ||
High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry. | Q30870717 | ||
Chemical cross-linking with thiol-cleavable reagents combined with differential mass spectrometric peptide mapping--a novel approach to assess intermolecular protein contacts | Q30919410 | ||
Mapping low-resolution three-dimensional protein structures using chemical cross-linking and Fourier transform ion-cyclotron resonance mass spectrometry | Q30975814 | ||
Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing | Q31058321 | ||
Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens | Q31082766 | ||
Screening for disulfide bonds in proteins by MALDI in-source decay and LIFT-TOF/TOF-MS. | Q31114195 | ||
A modular cross-linking approach for exploring protein interactions | Q31132902 | ||
MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides. | Q31151456 | ||
A Universal Denoising and Peak Picking Algorithm for LC−MS Based on Matched Filtration in the Chromatographic Time Domain | Q33194995 | ||
Isotopically coded cleavable cross-linker for studying protein-protein interaction and protein complexes | Q33215313 | ||
CLPM: a cross-linked peptide mapping algorithm for mass spectrometric analysis | Q33219785 | ||
Mapping protein interfaces by a trifunctional cross-linker combined with MALDI-TOF and ESI-FTICR mass spectrometry | Q33225858 | ||
Computer-assisted mass spectrometric analysis of naturally occurring and artificially introduced cross-links in proteins and protein complexes. | Q33231241 | ||
An evaluation of in vitro protein-protein interaction techniques: assessing contaminating background proteins. | Q33235549 | ||
xComb: a cross-linked peptide database approach to protein-protein interaction analysis | Q33543318 | ||
Identification of cross-linked peptides after click-based enrichment using sequential collision-induced dissociation and electron transfer dissociation tandem mass spectrometry | Q34011047 | ||
Mapping protein-protein interactions in solution by NMR spectroscopy | Q34481211 | ||
Analysis of protein complexes using mass spectrometry | Q34642068 | ||
Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes | Q35616628 | ||
CrossSearch, a user-friendly search engine for detecting chemically cross-linked peptides in conjugated proteins. | Q36684998 | ||
Informatics strategies for large-scale novel cross-linking analysis | Q36777522 | ||
Label transfer chemistry for the characterization of protein-protein interactions | Q36862262 | ||
Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications | Q36915280 | ||
In vivo identification of the outer membrane protein OmcA-MtrC interaction network in Shewanella oneidensis MR-1 cells using novel hydrophobic chemical cross-linkers | Q36978992 | ||
Identification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry | Q37113848 | ||
Identification of cross-linked peptides from large sequence databases | Q37286234 | ||
Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry | Q37621068 | ||
Specific interactions between the human RAD51 and RAD52 proteins | Q38362911 | ||
Analysis of chromatin structure by in vivo formaldehyde cross-linking. | Q41132202 | ||
Structure of mammalian cytochrome P450 2B4 complexed with 4-(4-chlorophenyl)imidazole at 1.9-A resolution: insight into the range of P450 conformations and the coordination of redox partner binding | Q42625456 | ||
A novel approach to denoising ion trap tandem mass spectra | Q42857379 | ||
Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis | Q43608832 | ||
Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces | Q44066233 | ||
Collision-induced dissociative chemical cross-linking reagents and methodology: Applications to protein structural characterization using tandem mass spectrometry analysis | Q44868630 | ||
Tandem mass spectrometry acquisition approaches to enhance identification of protein-protein interactions using low-energy collision-induced dissociative chemical crosslinking reagents | Q44871631 | ||
Mass spectrometric detection of affinity purified crosslinked peptides. | Q44897214 | ||
Probing three-dimensional structure of bovine serum albumin by chemical cross-linking and mass spectrometry | Q44994470 | ||
Shotgun cross-linking analysis for studying quaternary and tertiary protein structures | Q44998283 | ||
Unambiguous assignment of intramolecular chemical cross-links in modified mammalian membrane proteins by Fourier transform-tandem mass spectrometry. | Q46647840 | ||
A comparison of labeling and label-free mass spectrometry-based proteomics approaches. | Q47821579 | ||
Isotope-labeled cross-linkers and Fourier transform ion cyclotron resonance mass spectrometry for structural analysis of a protein/peptide complex | Q48511507 | ||
Appendix 5. Nomenclature for peptide fragment ions (positive ions). | Q50704572 | ||
Collisionally activated dissociation and electron capture dissociation of several mass spectrometry-identifiable chemical cross-linkers | Q51094319 | ||
Structural Analysis of Multiprotein Complexes by Cross-linking, Mass Spectrometry, and Database Searching | Q57898869 | ||
Characterization of an Antagonist Interleukin-6 Dimer by Stable Isotope Labeling, Cross-linking, and Mass Spectrometry | Q58039486 | ||
Identification of cross-linked peptides for protein interaction studies using mass spectrometry and 18O labeling | Q74799130 | ||
Isotope-labeled photoaffinity reagents and mass spectrometry to identify protein-ligand interactions | Q79432081 | ||
Mass spectrometry identifiable cross-linking strategy for studying protein-protein interactions | Q81207959 | ||
SearchXLinks. A program for the identification of disulfide bonds in proteins from mass spectra | Q82551038 | ||
Pro-CrossLink. Software tool for protein cross-linking and mass spectrometry | Q83033404 | ||
Mixed isotope photoaffinity reagents for identification of small-molecule targets by mass spectrometry | Q83871420 | ||
P433 | issue | 3 | |
P921 | main subject | automation | Q184199 |
data analysis | Q1988917 | ||
P304 | page(s) | 923-931 | |
P577 | publication date | 2011-02-16 | |
P1433 | published in | Journal of Proteome Research | Q3186939 |
P1476 | title | Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry | |
P478 | volume | 10 |
Q39682228 | A Study into the Collision-induced Dissociation (CID) Behavior of Cross-Linked Peptides |
Q38011630 | Advancing formaldehyde cross-linking towards quantitative proteomic applications |
Q90591360 | Aggregate Interactome Based on Protein Cross-linking Interfaces Predicts Drug Targets to Limit Aggregation in Neurodegenerative Diseases |
Q30317050 | Automated assignment of MS/MS cleavable cross-links in protein 3D-structure analysis |
Q38216441 | Catch me if you can: challenges and applications of cross-linking approaches |
Q48125124 | Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins. |
Q27007533 | Chemical cross-linking and native mass spectrometry: A fruitful combination for structural biology |
Q88951235 | Chemical cross-linking in the structural analysis of protein assemblies |
Q97421890 | Computational methods in mass spectrometry-based structural proteomics for studying protein structure, dynamics, and interactions |
Q58105967 | Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology |
Q30877932 | DXMSMS Match Program for Automated Analysis of LC-MS/MS Data Obtained Using Isotopically Coded CID-Cleavable Cross-Linking Reagents |
Q37651572 | Differential Tandem Mass Spectrometry-Based Cross-Linker: A New Approach for High Confidence in Identifying Protein Cross-Linking. |
Q41846013 | Discovery of Undefined Protein Cross-Linking Chemistry: A Comprehensive Methodology Utilizing 18O-Labeling and Mass Spectrometry |
Q28833732 | ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database |
Q37661766 | Elucidating the mechanism of substrate recognition by the bacterial Hsp90 molecular chaperone |
Q64290938 | Evaluation of Different Stationary Phases in the Separation of Inter-Cross-Linked Peptides |
Q30559242 | Hekate: software suite for the mass spectrometric analysis and three-dimensional visualization of cross-linked protein samples |
Q88790545 | Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus |
Q68472488 | Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers |
Q36846728 | In vivo protein complex topologies: Sights through a cross‐linking lens |
Q30373086 | Kojak: efficient analysis of chemically cross-linked protein complexes. |
Q30364926 | Large Scale Chemical Cross-linking Mass Spectrometry Perspectives. |
Q28818005 | Protein Structural Analysis via Mass Spectrometry-Based Proteomics |
Q30317238 | Reliable identification of cross-linked products in protein interaction studies by 13C-labeled p-benzoylphenylalanine |
Q28251875 | StavroX--a software for analyzing crosslinked products in protein interaction studies |
Q41853168 | The PHD and chromo domains regulate the ATPase activity of the human chromatin remodeler CHD4 |
Q41259598 | Using pLink to Analyze Cross-Linked Peptides |
Q55070618 | αB-crystallin interacts with and prevents stress-activated proteolysis of focal adhesion kinase by calpain in cardiomyocytes. |
Search more.