Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation

scientific article published on 22 September 2013

Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1018994410
P356DOI10.1038/NI.2712
P2888exact matchhttps://scigraph.springernature.com/pub.10.1038/ni.2712
P932PMC publication ID3805781
P698PubMed publication ID24056746
P5875ResearchGate publication ID256930541

P50authorGangqing HuQ42398099
Stefan MuljoQ56418841
Jinfang ZhuQ41296859
P2093author name stringKeji Zhao
Fang Yu
Qingsong Tang
Suveena Sharma
Thelma M Escobar
P2860cites workUltrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
A novel transcription factor, T-bet, directs Th1 lineage commitmentQ22253874
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expressionQ24608592
NONCODE v3.0: integrative annotation of long noncoding RNAsQ24621531
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiationQ24627354
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNAQ24630341
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expressionQ24654249
TopHat: discovering splice junctions with RNA-SeqQ24655505
Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cellsQ24655629
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAsQ24673619
Genome regulation by long noncoding RNAs.Q27691812
Cutting edge: influence of Tmevpg1, a long intergenic noncoding RNA, on the expression of Ifng by Th1 cellsQ42285829
Cutting edge: Th2 cell trafficking into the allergic lung is dependent on chemoattractant receptor signaling.Q51711854
Genome-Wide Identification of Long Noncoding RNAs in CD8+ T CellsQ57019914
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resourcesQ27860739
edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataQ27860819
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammalsQ28131802
An updated view on transcription factor GATA3-mediated regulation of Th1 and Th2 cell differentiationQ28239320
Ensembl 2013Q28280494
Genome-wide identification of polycomb-associated RNAs by RIP-seqQ28513635
The transcription factor GATA3 actively represses RUNX3 protein-regulated production of interferon-gammaQ28590652
Genome-wide analyses of transcription factor GATA3-mediated gene regulation in distinct T cell typesQ28591395
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 responseQ28592069
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclassesQ29547647
The transcription factor GATA-3 is necessary and sufficient for Th2 cytokine gene expression in CD4 T cellsQ29614226
Long noncoding RNAs with enhancer-like function in human cellsQ29614328
Differentiation of effector CD4 T cell populations (*)Q29614838
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene listsQ29615019
Natural RNA circles function as efficient microRNA spongesQ29617892
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policyQ29617901
A clustering approach for identification of enriched domains from histone modification ChIP-Seq dataQ33464035
Discrete roles of STAT4 and STAT6 transcription factors in tuning epigenetic modifications and transcription during T helper cell differentiationQ33997593
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cellsQ34581070
Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cellsQ34647935
X chromosome dosage compensation: how mammals keep the balanceQ34657007
Tmevpg1, a candidate gene for the control of Theiler's virus persistence, could be implicated in the regulation of gamma interferon.Q34976886
Cell type-specific DNA methylation at intragenic CpG islands in the immune system.Q35085275
An NK and T cell enhancer lies 280 kilobase pairs 3' to the gata3 structural geneQ35096281
Early Th1 cell differentiation is marked by a Tfh cell-like transitionQ35630458
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.Q35914259
Long non-coding RNAs and cancer: a new frontier of translational research?Q36208103
Independent roles for IL-2 and GATA-3 in stimulating naive CD4+ T cells to generate a Th2-inducing cytokine environmentQ36403025
STATs shape the active enhancer landscape of T cell populationsQ36431152
The UCSC Genome Browser database: extensions and updates 2013.Q36491237
The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-γ locusQ36623387
Transposable elements reveal a stem cell-specific class of long noncoding RNAsQ36633093
The transcription factor T-bet is induced by multiple pathways and prevents an endogenous Th2 cell program during Th1 cell responsesQ37029283
Role of microRNAs and long-non-coding RNAs in CD4(+) T-cell differentiation.Q38095498
Thermodynamic instability of siRNA duplex is a prerequisite for dependable prediction of siRNA activitiesQ40077876
P433issue11
P407language of work or nameEnglishQ1860
P304page(s)1190-1198
P577publication date2013-09-22
P1433published inNature ImmunologyQ1071725
P1476titleExpression and regulation of intergenic long noncoding RNAs during T cell development and differentiation
P478volume14

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cites work (P2860)
Q59129129A conserved enhancer regulates Il9 expression in multiple lineages
Q64082752A critical regulator of Bcl2 revealed by systematic transcript discovery of lncRNAs associated with T-cell differentiation
Q37687259A long noncoding RNA positively regulates CD56 in human natural killer cells
Q64075040Analysis of lncRNA Expression in Patients With Eosinophilic and Neutrophilic Asthma Focusing on LNC_000127
Q33804701Ash1l and lnc-Smad3 coordinate Smad3 locus accessibility to modulate iTreg polarization and T cell autoimmunity
Q35633012Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus
Q55041006Besides Pathology: Long Non-Coding RNA in Cell and Tissue Homeostasis.
Q46308011Catalog of Differentially Expressed Long Non-Coding RNA following Activation of Human and Mouse Innate Immune Response
Q37046361Comparative analysis of human and mouse transcriptomes of Th17 cell priming
Q34240220Complex interactions of transcription factors in mediating cytokine biology in T cells
Q50053910Control of Immune Cell Homeostasis and Function by lncRNAs.
Q38770693Critical Link Between Epigenetics and Transcription Factors in the Induction of Autoimmunity: a Comprehensive Review
Q100532920Critical role of WNK1 in MYC-dependent early mouse thymocyte development
Q35693153Cutting Edge: A Natural Antisense Transcript, AS-IL1α, Controls Inducible Transcription of the Proinflammatory Cytokine IL-1α.
Q38656230Cytokines and Long Noncoding RNAs
Q36104030De novo transcriptome profiling of highly purified human lymphocytes primary cells
Q37369125Differential expression of long non-coding RNAs in three genetic lines of rainbow trout in response to infection with Flavobacterium psychrophilum.
Q89525241Distinct and shared gene expression for human innate versus adaptive helper lymphoid cells
Q97905781Distinct and temporary-restricted epigenetic mechanisms regulate human αβ and γδ T cell development
Q58694926Divergent lncRNA Regulates Transcription in T-Helper 2 Cells
Q47331935Diversification of human plasmacytoid predendritic cells in response to a single stimulus
Q39384272Dynamic balance between master transcription factors determines the fates and functions of CD4 T cell and innate lymphoid cell subsets.
Q89529139Effects of Castration on miRNA, lncRNA, and mRNA Profiles in Mice Thymus
Q92435023Emerging role of long non-coding RNAs in normal and malignant hematopoiesis
Q33601739Emerging role of long noncoding RNAs as regulators of innate immune cell development and inflammatory gene expression
Q92486976Emerging roles of lncRNA in cancer and therapeutic opportunities
Q38749824Epi-drugs in combination with immunotherapy: a new avenue to improve anticancer efficacy
Q98290375Epigenetic mechanisms and the hallmarks of cancer: an intimate affair
Q35104345Epigenomic footprints across 111 reference epigenomes reveal tissue-specific epigenetic regulation of lincRNAs.
Q37345588Expression Profile of Long Noncoding RNAs in Peripheral Blood Mononuclear Cells from Multiple Sclerosis Patients
Q35540538Expression and functions of long noncoding RNAs during human T helper cell differentiation.
Q42630584Expression and regulation of long noncoding RNAs during the osteogenic differentiation of periodontal ligament stem cells in the inflammatory microenvironment.
Q35061273Expression and regulation of long noncoding RNAs in TLR4 signaling in mouse macrophages
Q33636096FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
Q40257193Flicr, a long noncoding RNA, modulates Foxp3 expression and autoimmunity.
Q35024083From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease
Q37237471Functional diversity of long non-coding RNAs in immune regulation
Q38638798Gene regulation in the immune system by long noncoding RNAs.
Q98735798Genome-Wide Transcriptional Regulation of the Long Non-coding RNA Steroid Receptor RNA Activator in Human Erythroblasts
Q35852065Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples.
Q37530111Genome-wide interrogation reveals hundreds of long intergenic noncoding RNAs that associate with cardiometabolic traits
Q37211030Global intron retention mediated gene regulation during CD4+ T cell activation.
Q34356521Helper T cell plasticity: impact of extrinsic and intrinsic signals on transcriptomes and epigenomes
Q35834781High-density P300 enhancers control cell state transitions
Q58543406Holo-Seq: single-cell sequencing of holo-transcriptome
Q36446700HoxBlinc RNA Recruits Set1/MLL Complexes to Activate Hox Gene Expression Patterns and Mesoderm Lineage Development.
Q36500891Identification of Differentially Expressed Long Non-coding RNAs in Polarized Macrophages
Q98177819Identification of a Six-Immune-Related Long Non-coding RNA Signature for Predicting Survival and Immune Infiltrating Status in Breast Cancer
Q36304015Identification of global regulators of T-helper cell lineage specification
Q89636311Identification of tumor immune infiltration-associated lncRNAs for improving prognosis and immunotherapy response of patients with non-small cell lung cancer
Q35910595Individuality and variation of personal regulomes in primary human T cells
Q26863279Integrating non-coding RNAs in JAK-STAT regulatory networks
Q92591233LRRC75A antisense lncRNA1 knockout attenuates inflammatory responses of bovine mammary epithelial cells
Q86755391LincRNA signatures in human lymphocytes
Q90659416Linkage of lncRNA CRNDE sponging miR-181a-5p with aggravated inflammation underlying sepsis
Q92283097LncRNA H19 initiates microglial pyroptosis and neuronal death in retinal ischemia/reperfusion injury
Q102054061LncRNA and mRNA expression profile of peripheral blood mononuclear cells in primary Sjögren's syndrome patients
Q33608858LncRNAs and immunity: watchdogs for host pathogen interactions.
Q26828561Long Intergenic Non-Coding RNAs: Novel Drivers of Human Lymphocyte Differentiation
Q37106356Long Intergenic Noncoding RNAs Mediate the Human Chondrocyte Inflammatory Response and Are Differentially Expressed in Osteoarthritis Cartilage.
Q92129207Long Non-Coding RNA Function in CD4+ T Cells: What We Know and What Next?
Q52880778Long Non-Coding RNAs Regulating Immunity in Insects.
Q64230361Long Non-Coding RNAs in the Regulation of Gene Expression: Physiology and Disease
Q47111389Long Non-Coding RNAs: Emerging and Versatile Regulators in Host-Virus Interactions.
Q38450930Long Non-Coding RNAs: New Players in Hematopoiesis and Leukemia
Q54225670Long Non-Coding RNAs: Novel Players in Regulation of Immune Response Upon Herpesvirus Infection.
Q98465782Long Non-coding RNAs in the Regulation of the Immune Response and Trained Immunity
Q92222562Long Noncoding RNA GATA3-AS1 Promotes Cell Proliferation and Metastasis in Hepatocellular Carcinoma by Suppression of PTEN, CDKN1A, and TP53
Q64069001Long Noncoding RNA LOC100129940-N Is Upregulated in Papillary Thyroid Cancer and Promotes the Invasion and Progression
Q92921576Long Noncoding RNA in Myeloid and Lymphoid Cell Differentiation, Polarization and Function
Q38641300Long Noncoding RNAs in Pluripotency of Stem Cells and Cell Fate Specification
Q37449365Long intergenic non-coding RNA expression signature in human breast cancer
Q38699690Long non-coding RNA CCAT1/miR-218/ZFX axis modulates the progression of laryngeal squamous cell cancer
Q98463631Long non-coding RNA FENDRR regulates IFNγ-induced M1 phenotype in macrophages
Q55007862Long non-coding RNA Lnc-Tim3 exacerbates CD8 T cell exhaustion via binding to Tim-3 and inducing nuclear translocation of Bat3 in HCC.
Q48367223Long non-coding RNA MALAT1 promotes proliferation and suppresses apoptosis of glioma cells through derepressing Rap1B by sponging miR-101.
Q91863613Long non-coding RNA PAXIP1-AS1 facilitates cell invasion and angiogenesis of glioma by recruiting transcription factor ETS1 to upregulate KIF14 expression
Q38782455Long non-coding RNA regulation of gene expression during differentiation
Q34616243Long non-coding RNAs and control of gene expression in the immune system
Q96813616Long non-coding RNAs are associated with Seneca Valley virus infection
Q64252674Long non-coding RNAs discriminate the stages and gene regulatory states of human humoral immune response
Q36446804Long non-coding RNAs in innate and adaptive immunity
Q38239035Long non-coding RNAs in the regulation of the immune response
Q38249152Long non-coding RNAs: the epigenetic regulators involved in the pathogenesis of reproductive disorder
Q37264066Long noncoding RNA #32 contributes to antiviral responses by controlling interferon-stimulated gene expression
Q92260953Long noncoding RNA CCDC144NL-AS1 knockdown induces naïve-like state conversion of human pluripotent stem cells
Q93359956Long noncoding RNA Malat1 is not essential for T cell development and response to LCMV infection
Q64100282Long noncoding RNA Pvt1 regulates the immunosuppression activity of granulocytic myeloid-derived suppressor cells in tumor-bearing mice
Q35895721Long noncoding RNA derived from CD244 signaling epigenetically controls CD8+ T-cell immune responses in tuberculosis infection
Q39267063Long noncoding RNA: a crosslink in biological regulatory network
Q90566209Long noncoding RNAs and their epigenetic function in hematological diseases
Q60957163Long noncoding RNAs as regulators of cancer immunity
Q56889287Long noncoding RNAs could be potential key players in the pathophysiology of Sjögren's syndrome
Q33624959Long noncoding RNAs during normal and malignant hematopoiesis
Q37209773Long noncoding RNAs in B-cell development and activation
Q38625682Long noncoding RNAs in T lymphocytes
Q26742057Long noncoding RNAs in hematopoiesis
Q35099139Long noncoding RNAs in innate and adaptive immunity
Q26798082Long noncoding RNAs in innate immunity
Q64074955Long noncoding RNAs of single hematopoietic stem and progenitor cells in healthy and dysplastic human bone marrow
Q38624904MBD2 Regulates Th17 Cell Differentiation and Experimental Severe Asthma by Affecting IRF4 Expression
Q56516078MBD2 regulates differentiation and function of Th17 cells in neutrophils- dominant asthma via HIF-1α
Q64986452MBD2-mediated Th17 differentiation in severe asthma is associated with impaired SOCS3 expression.
Q35915068Mechanisms of Jak/STAT signaling in immunity and disease
Q58573068Molecular Moirai: Long Noncoding RNA Mediators of HSC Fate
Q91495455NKILA lncRNA promotes tumor immune evasion by sensitizing T cells to activation-induced cell death
Q55396614Non-Coding RNA Mediated Regulation of Allogeneic T Cell Responses After Hematopoietic Transplantation.
Q59804818Non-coding RNAs Function as Immune Regulators in Teleost Fish
Q38212814Noncoding RNA and its associated proteins as regulatory elements of the immune system.
Q38561971Noncoding RNAs and chronic inflammation: Micro-managing the fire within.
Q38885490Noncoding RNAs in Cancer Immunology.
Q28081922Origin and functions of pro-inflammatory cytokine producing Foxp3+ regulatory T cells
Q35602226PAPST, a User Friendly and Powerful Java Platform for ChIP-Seq Peak Co-Localization Analysis and Beyond
Q49712151Peripheral whole blood lncRNA expression analysis in patients with eosinophilic asthma.
Q49627122Perspectives on Systems Modeling of Human Peripheral Blood Mononuclear Cells.
Q54226443Pilot study of variants of the IL-23R and STAT3 genes reveals no association with Hashimoto's thyroiditis in the Croatian population.
Q26740155Post-translational regulation of RORγt-A therapeutic target for the modulation of interleukin-17-mediated responses in autoimmune diseases
Q64105160Potential Implications of Long Noncoding RNAs in Autoimmune Diseases
Q91962578Profiles of Long Non-Coding RNAs and mRNA Expression in Human Macrophages Regulated by Interleukin-27
Q47808045Profiles of Long Noncoding RNAs in Human Naive and Memory T Cells
Q34282552Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes
Q38819269Regulation of hematopoiesis and immune responses by long non-coding RNAs
Q34479474Regulation of the ESC transcriptome by nuclear long noncoding RNAs
Q34289462Regulation of the Th1 genomic locus from Ifng through Tmevpg1 by T-bet
Q28078986Role of lncRNAs in Cellular Aging
Q54209307Seventeen-Year Journey Working With a Master.
Q38729399Single-cell RNA-seq reveals lincRNA expression differences in Hela-S3 cells
Q34368789Small and Long Regulatory RNAs in the Immune System and Immune Diseases
Q34463140Super-enhancers delineate disease-associated regulatory nodes in T cells
Q35234661Systems biology of myasthenia gravis, integration of aberrant lncRNA and mRNA expression changes
Q42002627T Helper Cell Differentiation, Heterogeneity, and Plasticity.
Q35940715T helper 2 (Th2) cell differentiation, type 2 innate lymphoid cell (ILC2) development and regulation of interleukin-4 (IL-4) and IL-13 production
Q39166891T-ALL and thymocytes: a message of noncoding RNAs
Q35673679The Emerging Functions of Long Noncoding RNA in Immune Cells: Autoimmune Diseases
Q64276928The Implications of the Long Non-Coding RNA in Non-Cancerous Diseases
Q47133464The LPS-inducible lncRNA Mirt2 is a negative regulator of inflammation
Q57492046The Long Non-coding RNA Anticipates Foxp3 Expression in Regulatory T Cells
Q61809078The Opening of Pandora's Box: An Emerging Role of Long Noncoding RNA in Viral Infections
Q49463699The Potential Role of circRNA in Tumor Immunity Regulation and Immunotherapy.
Q60956635The Role of Histone Methyltransferases and Long Non-coding RNAs in the Regulation of T Cell Fate Decisions
Q59813697The Role of Long Noncoding RNAs in Diabetic Alzheimer's Disease
Q28071681The emerging role of GATA transcription factors in development and disease
Q46920734The functions and unique features of long intergenic non-coding RNA.
Q37563956The lncRNAs involved in mouse airway allergic inflammation following induced pluripotent stem cell-mesenchymal stem cell treatment
Q42084982The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4.
Q35832323The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinoma
Q41082597The novel long intergenic noncoding RNA UCC promotes colorectal cancer progression by sponging miR-143.
Q91521908The regulatory network among CircHIPK3, LncGAS5, and miR-495 promotes Th2 differentiation in allergic rhinitis
Q97072562The role of Long Non-Coding RNAs (lncRNAs) and downstream signaling pathways in Leukemia progression
Q49596604The role of long non-coding RNAs in rheumatic diseases.
Q88721030The transcription factor Bhlhe40 is a switch of inflammatory versus antiinflammatory Th1 cell fate determination
Q35064355Transcriptional and epigenetic networks of helper T and innate lymphoid cells.
Q34631682Transcriptional and epigenetic regulation of T-helper lineage specification
Q38695449Transcriptional regulation of early T-cell development in the thymus
Q36015482Transcriptional regulatory networks for CD4 T cell differentiation
Q36349796Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells
Q33559942Transcriptome analyses of differential gene expression in the bursa of Fabricius between Silky Fowl and White Leghorn
Q99571294Transcriptome analysis of peripheral whole blood identifies crucial lncRNAs implicated in childhood asthma
Q37240008Transcriptomic profiling of long non-coding RNAs in dermatomyositis by microarray analysis
Q54200911Trap1a is an X-linked and cell-intrinsic regulator of thymocyte development.
Q38668939Unique features of long non-coding RNA biogenesis and function
Q52677986Unravelling the molecular basis for regulatory T-cell plasticity and loss of function in disease.
Q39241592Visualizing the life of mRNA in T cells.
Q38274918lncRNA-mediated regulation of the interferon response
Q90189626ncRNAs in Type-2 Immunity

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