scholarly article | Q13442814 |
P8978 | DBLP publication ID | journals/bioinformatics/NeronMMJMLCTL09 |
P356 | DOI | 10.1093/BIOINFORMATICS/BTP493 |
P932 | PMC publication ID | 2773253 |
P698 | PubMed publication ID | 19689959 |
P5875 | ResearchGate publication ID | 26750750 |
P50 | author | Julien Maupetit | Q43103738 |
Hervé Ménager | Q48247177 | ||
Sébastien Carrere | Q56860119 | ||
P2093 | author name string | Nicolas Joly | |
Catherine Letondal | |||
Bertrand Néron | |||
Corinne Maufrais | |||
Pierre Tuffery | |||
Sébastien Letort | |||
P2860 | cites work | BioManager: the use of a bioinformatics web application as a teaching tool in undergraduate bioinformatics training | Q36917432 |
A Web interface generator for molecular biology programs in Unix | Q38441652 | ||
The biology workbench—A seamless database and analysis environment for the biologist | Q47810422 | ||
Intelligent client for integrating bioinformatics services | Q48468992 | ||
Designing the myExperiment Virtual Research Environment for the Social Sharing of Workflows | Q56966916 | ||
REMORA: a pilot in the ocean of BioMoby web-services | Q57935132 | ||
RPBS: a web resource for structural bioinformatics | Q24813293 | ||
EMBOSS: the European Molecular Biology Open Software Suite | Q27860491 | ||
Taverna: a tool for the composition and enactment of bioinformatics workflows | Q28267254 | ||
wEMBOSS: a web interface for EMBOSS | Q28283874 | ||
Galaxy: a platform for interactive large-scale genome analysis | Q29547494 | ||
BioExtract server--an integrated workflow-enabling system to access and analyze heterogeneous, distributed biomolecular data | Q29580498 | ||
GenePattern 2.0 | Q29614171 | ||
Seahawk: moving beyond HTML in Web-based bioinformatics analysis | Q33288111 | ||
Pise: software for building bioinformatics webs | Q35038074 | ||
Gbrowse Moby: a Web-based browser for BioMoby Services | Q35130317 | ||
Barriers and enablers to the acceptance of bioinformatics tools: a qualitative study | Q36025206 | ||
P433 | issue | 22 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | bioinformatics | Q128570 |
P304 | page(s) | 3005-3011 | |
P577 | publication date | 2009-08-17 | |
P1433 | published in | Bioinformatics | Q4914910 |
P1476 | title | Mobyle: a new full web bioinformatics framework | |
P478 | volume | 25 |
Q33797941 | A Computational Methodology to Overcome the Challenges Associated With the Search for Specific Enzyme Targets to Develop Drugs Against Leishmania major. |
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Q34076895 | A gateway for phylogenetic analysis powered by grid computing featuring GARLI 2.0. |
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