Mobyle: a new full web bioinformatics framework

scientific article published on 17 August 2009

Mobyle: a new full web bioinformatics framework is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/bioinformatics/NeronMMJMLCTL09
P356DOI10.1093/BIOINFORMATICS/BTP493
P932PMC publication ID2773253
P698PubMed publication ID19689959
P5875ResearchGate publication ID26750750

P50authorJulien MaupetitQ43103738
Hervé MénagerQ48247177
Sébastien CarrereQ56860119
P2093author name stringNicolas Joly
Catherine Letondal
Bertrand Néron
Corinne Maufrais
Pierre Tuffery
Sébastien Letort
P2860cites workBioManager: the use of a bioinformatics web application as a teaching tool in undergraduate bioinformatics trainingQ36917432
A Web interface generator for molecular biology programs in UnixQ38441652
The biology workbench—A seamless database and analysis environment for the biologistQ47810422
Intelligent client for integrating bioinformatics servicesQ48468992
Designing the myExperiment Virtual Research Environment for the Social Sharing of WorkflowsQ56966916
REMORA: a pilot in the ocean of BioMoby web-servicesQ57935132
RPBS: a web resource for structural bioinformaticsQ24813293
EMBOSS: the European Molecular Biology Open Software SuiteQ27860491
Taverna: a tool for the composition and enactment of bioinformatics workflowsQ28267254
wEMBOSS: a web interface for EMBOSSQ28283874
Galaxy: a platform for interactive large-scale genome analysisQ29547494
BioExtract server--an integrated workflow-enabling system to access and analyze heterogeneous, distributed biomolecular dataQ29580498
GenePattern 2.0Q29614171
Seahawk: moving beyond HTML in Web-based bioinformatics analysisQ33288111
Pise: software for building bioinformatics websQ35038074
Gbrowse Moby: a Web-based browser for BioMoby ServicesQ35130317
Barriers and enablers to the acceptance of bioinformatics tools: a qualitative studyQ36025206
P433issue22
P407language of work or nameEnglishQ1860
P921main subjectbioinformaticsQ128570
P304page(s)3005-3011
P577publication date2009-08-17
P1433published inBioinformaticsQ4914910
P1476titleMobyle: a new full web bioinformatics framework
P478volume25

Reverse relations

cites work (P2860)
Q33797941A Computational Methodology to Overcome the Challenges Associated With the Search for Specific Enzyme Targets to Develop Drugs Against Leishmania major.
Q30488267A Digital Repository and Execution Platform for Interactive Scholarly Publications in Neuroscience
Q41560010A calcium sensor - protein kinase signaling module diversified in plants and is retained in all lineages of Bikonta species.
Q30044413A dual-targeted aminoacyl-tRNA synthetase in Plasmodium falciparum charges cytosolic and apicoplast tRNACys
Q34076895A gateway for phylogenetic analysis powered by grid computing featuring GARLI 2.0.
Q47862323A novel Gerstmann-Sträussler-Scheinker disease mutation defines a precursor for amyloidogenic 8 kDa PrP fragments and reveals N-terminal structural changes shared by other GSS alleles.
Q37194619An updated view of plasmid conjugation and mobilization in Staphylococcus
Q43541216Analysis of Extensive [FeFe] Hydrogenase Gene Diversity Within the Gut Microbiota of Insects Representing Five Families of Dictyoptera
Q34325718Antibodies reacting with JCPyV_VP2 _167-15mer as a novel serological marker for JC polyomavirus infection
Q46564477Arsenite oxidase gene diversity among Chloroflexi and Proteobacteria from El Tatio Geyser Field, Chile
Q24294391Aspartate 112 is the selectivity filter of the human voltage-gated proton channel
Q33631749BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
Q42369916Benzene and Naphthalene Degrading Bacterial Communities in an Oil Sands Tailings Pond
Q33899790Bile acids and bicarbonate inversely regulate intracellular cyclic di-GMP in Vibrio cholerae.
Q30948844BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ
Q57229901Bioinformatics Applications Discovery and Composition with the Mobyle Suite and MobyleNet
Q35746085Blocking Hsp70 enhances the efficiency of amphotericin B treatment against resistant Aspergillus terreus strains.
Q36764988Broadly neutralizing human monoclonal JC polyomavirus VP1-specific antibodies as candidate therapeutics for progressive multifocal leukoencephalopathy
Q36342243Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases
Q46483585Catechol 2,3-dioxygenase and other meta-cleavage catabolic pathway genes in the 'anaerobic' termite gut spirochete Treponema primitia
Q33798115Characterization of sal(A), a novel gene responsible for lincosamide and streptogramin A resistance in Staphylococcus sciuri
Q55061668Characterization of the Catalytic Structure of Plant Phytase, Protein Tyrosine Phosphatase-Like Phytase, and Histidine Acid Phytases and Their Biotechnological Applications.
Q42381525Charge Distribution Fine-Tunes the Translocation of α-Helical Amphipathic Peptides across Membranes
Q34378090Cloudgene: a graphical execution platform for MapReduce programs on private and public clouds
Q43033422Cold adaptation of tRNA nucleotidyltransferases: a tradeoff in activity, stability and fidelity.
Q28650373Community-driven development for computational biology at Sprints, Hackathons and Codefests
Q36011014Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes
Q42209619Complete genome sequences of pigeon adenovirus 1 and duck adenovirus 2 extend the number of species within the genus Aviadenovirus.
Q36715293Construction and validation of a homology model of the human voltage-gated proton channel hHV1
Q34611840Convergent bacterial microbiotas in the fungal agricultural systems of insects
Q27667246Crystal Structure of an Integron Gene Cassette-Associated Protein from Vibrio cholerae Identifies a Cationic Drug-Binding Module
Q40777774Dealing with salinity extremes and nitrogen limitation - an unexpected strategy of the marine bacterium Dinoroseobacter shibae
Q38846804Defining the Clinical Value of a Genomic Diagnosis in the Era of Next-Generation Sequencing.
Q36158743Developing peptide-based multivalent antagonists of proliferating cell nuclear antigen and a fluorescence-based PCNA binding assay.
Q64054573Development of a novel short 12-meric papiliocin-derived peptide that is effective against Gram-negative sepsis
Q42155316Different evolutionary modifications as a guide to rewire two-component systems
Q33893358Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes
Q38388397Docking studies for screening anticancer compounds of Azadirachta indica using Saccharomyces cerevisiae as model system
Q44082871Dramatic expansion and developmental expression diversification of the methuselah gene family during recent Drosophila evolution
Q85776612Dynamic expression of a Hydra FGF at boundaries and termini
Q41684291Dysregulation of Alternative Poly-adenylation as a Potential Player in Autism Spectrum Disorder
Q28686603Evidence for the widespread distribution of CRISPR-Cas system in the PhylumCyanobacteria
Q40220786Evolution of a wild-plant tobamovirus passaged through an exotic host: Fixation of mutations and increased replication
Q28743961Evolution of the actin gene family in testate lobose amoebae (Arcellinida) is characterized by two distinct clades of paralogs and recent independent expansions
Q34398611Evolutionary classification of ammonium, nitrate, and peptide transporters in land plants
Q34557640Evolutionary conservation of the oocyte transcriptome among vertebrates and its implications for understanding human reproductive function.
Q47125126Evolutionary history of callose synthases in terrestrial plants with emphasis on proteins involved in male gametophyte development
Q34818955Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming
Q39126742Exploring Picea glauca aquaporins in the context of needle water uptake and xylem refilling
Q84937686Exploring a Model of a Chemokine Receptor/Ligand Complex in an Explicit Membrane Environment by Molecular Dynamics Simulation: The Human CCR1 Receptor
Q58803884Exploring the biological roles of Dothideomycetes ABC proteins: Leads from their phylogenetic relationships with functionally-characterized Ascomycetes homologs
Q34004572Extending KNIME for next-generation sequencing data analysis
Q35604907FAF-Drugs3: a web server for compound property calculation and chemical library design.
Q47317732FAF-Drugs4: free ADME-tox filtering computations for chemical biology and early stages drug discovery
Q54397483FGF signaling emerged concomitantly with the origin of Eumetazoans
Q36051086Flower-deficient mice have reduced susceptibility to skin papilloma formation
Q53215948Functionalization of mesoporous silica nanoparticles with a cell-penetrating peptide to target mammalian sperm in vitro
Q21092859Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
Q39027828Gene Ages, Nomenclatures, and Functional Diversification of the Methuselah/Methuselah-Like GPCR Family in Drosophila and Tribolium
Q34120230Genetic and phenotypic characterization of GII-4 noroviruses that circulated during 1987 to 2008.
Q42185749Genetic characterization and pathogenicity assessment of Newcastle disease virus isolated from wild peacock
Q33980246Genomic analysis reveals multiple [FeFe] hydrogenases and hydrogen sensors encoded by treponemes from the H(2)-rich termite gut.
Q37545264Genomic investigation of lysogen formation and host lysis systems of the Salmonella temperate bacteriophage SPN9CC.
Q39877469Genomic organization and evolution of ruminant lysozyme c genes
Q33582797Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L.).
Q37430043Genomic, RNAseq, and molecular modeling evidence suggests that the major allergen domain in insects evolved from a homodimeric origin
Q28608430Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud
Q39089567Global insights into the Chinese hamster and CHO cell transcriptomes.
Q28681837GnpIS: an information system to integrate genetic and genomic data from plants and fungi
Q64284066Gypsum-DL: an open-source program for preparing small-molecule libraries for structure-based virtual screening
Q41811142HTS-Net: An integrated regulome-interactome approach for establishing network regulation models in high-throughput screenings
Q61814811Hydroxycholesterol binds and enhances the anti-viral activities of zebrafish monomeric c-reactive protein isoforms
Q83515139ITS2 database IV: interactive taxon sampling for internal transcribed spacer 2 based phylogenies
Q42254255Identification and analysis of integrons and cassette arrays in bacterial genomes
Q39026658Identification of protein secretion systems in bacterial genomes
Q36443033Immunity raised by recent European subtype 1 PRRSV strains allows better replication of East European subtype 3 PRRSV strain Lena than that raised by an older strain
Q33698455Imogene: identification of motifs and cis-regulatory modules underlying gene co-regulation.
Q34380046Impairments of mecA gene detection in bovine Staphylococcus spp
Q34391073In silico discovery of novel transcription factors regulated by mTOR-pathway activities
Q39180209In silico structural characterization of protein targets for drug development against Trypanosoma cruzi
Q31116335Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases
Q33901207Investigating reproducibility and tracking provenance - A genomic workflow case study
Q34683416Investigation of interactions at the extracellular loops of the relaxin family peptide receptor 1 (RXFP1).
Q34062474Is mitochondrial tRNA(phe) variant m.593T>C a synergistically pathogenic mutation in Chinese LHON families with m.11778G>A?
Q35802549Jflow: a workflow management system for web applications
Q36380048Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers.
Q34044769Knime4Bio: a set of custom nodes for the interpretation of next-generation sequencing data with KNIME.
Q48703350LOTUS, a new domain associated with small RNA pathways in the germline
Q33851028Lactobacillus gigeriorum sp. nov., isolated from chicken crop
Q35597960MTiOpenScreen: a web server for structure-based virtual screening.
Q28655231Mammalian keratin associated proteins (KRTAPs) subgenomes: disentangling hair diversity and adaptation to terrestrial and aquatic environments
Q52719599Mechanism of Action of the Cytotoxic Asmarine Alkaloids.
Q39241891Membrane Anchoring of Aminoacyl-tRNA Synthetases by Convergent Acquisition of a Novel Protein Domain
Q37589510Metal Selectivity of a Cd-, Co-, and Zn-Transporting P1B-type ATPase
Q28547267Methanesulfonate (MSA) Catabolic Genes from Marine and Estuarine Bacteria
Q33796448Mobyle SNAP Workbench: a web-based analysis portal for population genetics and evolutionary genomics
Q27305606Molecular Evolution of the Neuropeptide S Receptor
Q35001135Molecular mechanism of the chaperone function of mini-α-crystallin, a 19-residue peptide of human α-crystallin.
Q35853966Multimodular type I polyketide synthases in algae evolve by module duplications and displacement of AT domains in trans.
Q37229415Multiple Genetic Mechanisms Contribute to Visual Sensitivity Variation in the Labridae
Q50133220NS2 proteases from hepatitis C virus and related hepaciviruses share composite active sites and previously unrecognized intrinsic proteolytic activities.
Q45792793New Drosophila P-like elements and reclassification of Drosophila P-elements subfamilies.
Q39072584New highly divergent Plum pox virus isolates infecting sour cherry in Russia
Q44853811Next-generation sequencing data interpretation: enhancing reproducibility and accessibility
Q34311728Novel Strategy to Evaluate Infectious Salmon Anemia Virus Variants by High Resolution Melting
Q35574209Novel p16 binding peptide development for p16-overexpressing cancer cell detection using phage display
Q35862438Novel structural arrangement of nematode cystathionine β-synthases: characterization of Caenorhabditis elegans CBS-1.
Q38310400Opposite action of R2R3-MYBs from different subgroups on key genes of the shikimate and monolignol pathways in spruce
Q35629306Origin and Population Dynamics of a Novel HIV-1 Subtype G Clade Circulating in Cape Verde and Portugal
Q46331480Oxidative Stress Response Tips the Balance in Aspergillus terreus Amphotericin B Resistance.
Q36088360PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides.
Q92309930PatchSearch: a web server for off-target protein identification
Q34530068Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package.
Q41877586PhyleasProg: a user-oriented web server for wide evolutionary analyses.
Q28647794Phylogenetic analysis of genome rearrangements among five mammalian orders
Q46882814Phylogenetic and syntenic analyses of the 12-spanner drug:H(+) antiporter family 1 (DHA1) in pathogenic Candida species: evolution of MDR1 and FLU1 genes
Q43018938Plant Defensin type 1 (PDF1): protein promiscuity and expression variation within the Arabidopsis genus shed light on zinc tolerance acquisition in Arabidopsis halleri.
Q45059266Quantum Dot-Peptide-Fullerene Bioconjugates for Visualization of in Vitro and in Vivo Cellular Membrane Potential.
Q35906813Salt Tolerance Enhancement of Liquid Chromatography-Matrix-Assisted Laser Desorption/Ionization-Mass Spectrometry Using Matrix Additive Methylenediphosphonic Acid
Q34599126Selective sweep in the Flotillin-2 region of European Drosophila melanogaster
Q57229912Semantic Map for Structural Bioinformatics: Enhanced Service Discovery Based on High Level Concept Ontology
Q42649384Semantically-Guided Workflow Construction in Taverna: The SADI and BioMoby Plug-Ins
Q28714689Seqcrawler: biological data indexing and browsing platform
Q42275081Sequence Analysis of Transplacentally Acquired Human Herpesvirus 6 DNA Is Consistent With Transmission of a Chromosomally Integrated Reactivated Virus
Q28742419Sequence and function of basic helix-loop-helix proteins required for stomatal development in Arabidopsis are deeply conserved in land plants
Q35137074Sequence, distribution and chromosomal context of class I and class II pilin genes of Neisseria meningitidis identified in whole genome sequences.
Q42849352SidL, an Aspergillus fumigatus Transacetylase Involved in Biosynthesis of the Siderophores Ferricrocin and Hydroxyferricrocin
Q35053587Simple sequence repeats together with mismatch repair deficiency can bias mutagenic pathways in Pseudomonas aeruginosa during chronic lung infection
Q50351022Skeletal muscle signal peptide optimization for enhancing propeptide or cytokine secretion
Q35565456Specific N-terminal cleavage of ribosomal protein L27 in Staphylococcus aureus and related bacteria
Q35149866Spectrin binding motifs regulate Scribble cortical dynamics and polarity function
Q27695578Structural insight into arginine methylation by the mouse protein arginine methyltransferase 7: a zinc finger freezes the mimic of the dimeric state into a single active site
Q38967047Structural modeling and functional analysis of the essential ribosomal processing protease Prp from Staphylococcus aureus.
Q48342123Structural role of a conserved active site cis proline in the Thermotoga maritima acetyl esterase from the carbohydrate esterase family 7.
Q47396402Successful Identification of Cardiac Troponin Calcium Sensitizers Using a Combination of Virtual Screening and ROC Analysis of Known Troponin C Binders
Q33354705Synchronization of the flowering transition by the tomato TERMINATING FLOWER gene
Q29580544The BioExtract Server: a web-based bioinformatic workflow platform
Q61800932The Distribution of Standard Deviations Applied to High Throughput Screening
Q34998067The GRAS gene family in pine: transcript expression patterns associated with the maturation-related decline of competence to form adventitious roots
Q42007194The HBM domain: introducing bimodularity to bacterial sensing
Q42161153The ITS2 Database
Q84290404The PWAPA cassette: Intimate association of a PHD-like finger and a winged-helix domain in proteins included in histone-modifying complexes
Q39475144The Streptococcus iniae transcriptional regulator CpsY is required for protection from neutrophil-mediated killing and proper growth in vitro
Q30560932The Wasp System: an open source environment for managing and analyzing genomic data.
Q40831294The acidic C-terminus of vaccinia virus I3 single-strand binding protein promotes proper assembly of DNA-protein complexes
Q35068785The drug:H⁺ antiporters of family 2 (DHA2), siderophore transporters (ARN) and glutathione:H⁺ antiporters (GEX) have a common evolutionary origin in hemiascomycete yeasts.
Q52715917The evolutionary history of mariner-like elements in Neotropical drosophilids
Q24619981The genetic basis of laboratory adaptation in Caulobacter crescentus
Q50487967The interplay between vacuolar and siderophore-mediated iron storage in Aspergillus fumigatus
Q38647323The metalloreductase FreB is involved in adaptation of Aspergillus fumigatus to iron starvation.
Q52736667The role of vertical and horizontal transfer in the evolution of Paris-like elements in drosophilid species
Q42491909The susceptibility of diverse species of cultured oligochaetes to the fish parasite Myxobolus pseudodispar Gorbunova (Myxozoa).
Q44589834Think pink: photosynthesis, plasmids and the Roseobacter clade
Q38294117Three-dimensional homology model of GlcNAc-TV glycosyltransferase
Q51599134Three-dimensional structure generators of drug-like compounds: DG-AMMOS, an open-source package.
Q33359730Transcriptional, posttranscriptional, and posttranslational regulation of SHOOT MERISTEMLESS gene expression in Arabidopsis determines gene function in the shoot apex.
Q33822717Using functional signature ontology (FUSION) to identify mechanisms of action for natural products
Q36497483Waxy Phenotype Evolution in the Allotetraploid Cereal Broomcorn Millet: Mutations at the GBSSI Locus in Their Functional and Phylogenetic Context
Q36238563WeBIAS: a web server for publishing bioinformatics applications
Q36475646Whole-genome duplication and the functional diversification of teleost fish hemoglobins
Q39084194Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes.
Q36045950Widespread green algae Chlorella and Stichococcus exhibit polar-temperate and tropical-temperate biogeography
Q30984021deFUME: Dynamic exploration of functional metagenomic sequencing data
Q41941968fpocket: online tools for protein ensemble pocket detection and tracking.
Q24602686microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
Q43032625morePhyML: Improving the phylogenetic tree space exploration with PhyML 3

Search more.