Transduction-specific ATLAS reveals a cohort of highly active L1 retrotransposons in human populations

scientific article published on 23 April 2013

Transduction-specific ATLAS reveals a cohort of highly active L1 retrotransposons in human populations is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/HUMU.22327
P932PMC publication ID3880804
P698PubMed publication ID23553801
P5875ResearchGate publication ID236104702

P2093author name stringJohn V Moran
Raheleh Rahbari
Richard M Badge
Christine R Beck
Catriona M Macfarlane
John F Wagstaff
Pamela Collier
Samantha Igoe
P2860cites workInitial sequencing and analysis of the human genomeQ21045365
Hot L1s account for the bulk of retrotransposition in the human populationQ22066292
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Basic local alignment search toolQ25938991
Structural constraints on RNA virus evolutionQ27469715
Human L1 retrotransposon encodes a conserved endonuclease required for retrotranspositionQ28114795
Mammalian small nucleolar RNAs are mobile genetic elementsQ28469078
LINE-1 elements in structural variation and diseaseQ28654758
LINE-1 retrotransposition activity in human genomesQ28743798
Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humansQ28744043
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomesQ28749562
Genomic characterization of recent human LINE-1 insertions: evidence supporting random insertionQ28776429
Reading between the LINEs: human genomic variation induced by LINE-1 retrotranspositionQ28776447
A greedy algorithm for aligning DNA sequencesQ29547622
High frequency retrotransposition in cultured mammalian cellsQ29618259
Human LINE retrotransposons generate processed pseudogenesQ29618327
Human L1 retrotransposition: cis preference versus trans complementationQ29618363
LINE-mediated retrotransposition of marked Alu sequencesQ29618440
Somatic mosaicism in neuronal precursor cells mediated by L1 retrotranspositionQ29618826
A new exon created by intronic insertion of a rearranged LINE-1 element as the cause of chronic granulomatous diseaseQ74297952
High polymorphism level of genomic sequences flanking insertion sites of human endogenous retroviral long terminal repeatsQ74456195
L1 retrotransposition in human neural progenitor cellsQ29619265
Natural mutagenesis of human genomes by endogenous retrotransposonsQ29619443
Somatic retrotransposition alters the genetic landscape of the human brainQ29622895
Exon shuffling by L1 retrotranspositionQ29622913
A new family of chimeric retrotranscripts formed by a full copy of U6 small nuclear RNA fused to the 3' terminus of l1.Q30738344
ATLAS: a system to selectively identify human-specific L1 insertions.Q33905045
SVA elements are nonautonomous retrotransposons that cause disease in humansQ33905356
Multiple fates of L1 retrotransposition intermediates in cultured human cells.Q33925050
Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancerQ34233218
Rescuing Alu: recovery of new inserts shows LINE-1 preserves Alu activity through A-tail expansionQ34388491
A human genome structural variation sequencing resource reveals insights into mutational mechanismsQ34519304
Natural genetic variation caused by transposable elements in humansQ34569749
Identification, characterization, and cell specificity of a human LINE-1 promoterQ34570051
Multiplex allele-specific target amplification based on PCR suppressionQ34590290
Extensive individual variation in L1 retrotransposition capability contributes to human genetic diversityQ34597888
L1 retrotransposition in neurons is modulated by MeCP2Q34686579
Frequent human genomic DNA transduction driven by LINE-1 retrotranspositionQ35026231
Retrotransposition of marked SVA elements by human L1s in cultured cellsQ35155981
Similarities between long interspersed element-1 (LINE-1) reverse transcriptase and telomerase.Q35650833
Pathogenic orphan transduction created by a nonreference LINE-1 retrotransposonQ35672729
Two additional potential retrotransposons isolated from a human L1 subfamily that contains an active retrotransposable elementQ36416853
Many human L1 elements are capable of retrotranspositionQ36859141
A comprehensive analysis of recently integrated human Ta L1 elementsQ37218123
Evidence consistent with human L1 retrotransposition in maternal meiosis I.Q37218145
L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicismQ37240559
LINE-1 retrotransposition in human embryonic stem cellsQ40139315
More active human L1 retrotransposons produce longer insertionsQ40695421
Transduction of 3'-flanking sequences is common in L1 retrotranspositionQ40896511
Mobile interspersed repeats are major structural variants in the human genomeQ42423737
IAP display: a simple method to identify mouse strain specific IAP insertionsQ42587636
Isolation of an active human transposable elementQ42614185
Origin of the human L1 elements: proposed progenitor genes deduced from a consensus DNA sequenceQ42660978
Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particlesQ42688858
A new retrotransposable human L1 element from the LRE2 locus on chromosome 1q produces a chimaeric insertionQ42693461
Estimating the age of retrotransposon subfamilies using maximum likelihoodQ43104160
Full-length human L1 insertions retain the capacity for high frequency retrotransposition in cultured cellsQ47948394
L1 retrotransposition can occur early in human embryonic development.Q51986818
A transient assay reveals that cultured human cells can accommodate multiple LINE-1 retrotransposition events.Q53905712
Novel types of mutation in the choroideremia (CHM) gene: a full-length L1 insertion and an intronic mutation activating a cryptic exonQ59409782
L1 (LINE-1) retrotransposon evolution and amplification in recent human historyQ73837883
Selection against deleterious LINE-1-containing loci in the human lineageQ73923911
P433issue7
P921main subjectretrotransposonQ413988
P304page(s)974-985
P577publication date2013-04-23
P1433published inHuman MutationQ5937269
P1476titleTransduction-specific ATLAS reveals a cohort of highly active L1 retrotransposons in human populations
P478volume34

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cites work (P2860)
Q33558345A comprehensive approach to expression of L1 loci
Q28602786Activation of individual L1 retrotransposon instances is restricted to cell-type dependent permissive loci
Q47163077Detection of subclonal L1 transductions in colorectal cancer by long-distance inverse-PCR and Nanopore sequencing
Q64076955Dynamic Methylation of an L1 Transduction Family during Reprogramming and Neurodifferentiation
Q35575837Genome-wide amplification of proviral sequences reveals new polymorphic HERV-K(HML-2) proviruses in humans and chimpanzees that are absent from genome assemblies
Q64913254Heritable L1 Retrotransposition Events During Development: Understanding Their Origins: Examination of heritable, endogenous L1 retrotransposition in mice opens up exciting new questions and research directions.
Q41199624Heritable L1 retrotransposition in the mouse primordial germline and early embryo
Q52593254L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis.
Q35234637Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes
Q35687336Mobile element insertions are frequent in oesophageal adenocarcinomas and can mislead paired-end sequencing analysis
Q36012836Next-generation sequencing-based detection of germline L1-mediated transductions
Q52673975Spliced integrated retrotransposed element (SpIRE) formation in the human genome.
Q39130945The Human Long Interspersed Element-1 Retrotransposon: An Emerging Biomarker of Neoplasia.
Q26851352The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes
Q38601704The Mobile Element Locator Tool (MELT): Population-scale mobile element discovery and biology
Q32183705The Role of Somatic L1 Retrotransposition in Human Cancers
Q39392722Transposable elements in cancer
Q28648093U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals
Q35438613Ubiquitous L1 mosaicism in hippocampal neurons

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