Reconciliation of metabolites and biochemical reactions for metabolic networks

scientific article

Reconciliation of metabolites and biochemical reactions for metabolic networks is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/bib/BernardBMMXP14
P356DOI10.1093/BIB/BBS058
P932PMC publication ID3896926
P698PubMed publication ID23172809
P5875ResearchGate publication ID233746055

P50authorThomas BernardQ37392090
Sébastien MorettiQ42233018
Ioannis XenariosQ42233078
Alan J BridgeQ42745470
Marco PagniQ47097366
Anne MorgatQ56604104
P2860cites workBiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructionsQ21284353
HMDB: the Human Metabolome DatabaseQ23039065
KEGG: kyoto encyclopedia of genes and genomesQ24515297
MetaCyc: a multiorganism database of metabolic pathways and enzymesQ24538678
A protocol for generating a high-quality genome-scale metabolic reconstructionQ24603373
BRENDA, the enzyme information system in 2011Q24613881
ChEBI: a database and ontology for chemical entities of biological interestQ24650818
LMSD: LIPID MAPS structure databaseQ24675592
MetaMerge: scaling up genome-scale metabolic reconstructions, with application to Mycobacterium tuberculosisQ27499682
Metabolic network structure determines key aspects of functionality and regulationQ28214885
What is flux balance analysis?Q28275348
High-throughput generation, optimization and analysis of genome-scale metabolic modelsQ28291992
Reactome: a database of reactions, pathways and biological processesQ28298042
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic informationQ29615371
Reconciliation of genome-scale metabolic reconstructions for comparative systems analysisQ30432712
The application of flux balance analysis in systems biologyQ30451787
How to identify essential genes from molecular networks?Q33509914
Integration of metabolic databases for the reconstruction of genome-scale metabolic networksQ33659541
Challenges in integrating Escherichia coli molecular biology dataQ33741288
MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databasesQ34122951
Rhea--a manually curated resource of biochemical reactionsQ35630899
UniPathway: a resource for the exploration and annotation of metabolic pathwaysQ35631060
Use of genome-scale microbial models for metabolic engineeringQ35753258
Towards multidimensional genome annotationQ36371202
Identifying essential genes in Escherichia coli from a metabolic optimization principleQ37085720
Applications of system-level models of metabolism for analysis of bacterial physiology and identification of new drug targetsQ37971381
BKM-react, an integrated biochemical reaction databaseQ38322520
A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.Q40519259
Very broad Markush claims; a solution or a problem? Proceedings of a round-table discussion held on August 29, 1990.Q44590838
Genome-scale metabolic models: reconstruction and analysis.Q49045587
P433issue1
P921main subjectmetabolic networkQ2263094
P304page(s)123-135
P577publication date2012-11-19
P1433published inBriefings in BioinformaticsQ4967031
P1476titleReconciliation of metabolites and biochemical reactions for metabolic networks
P478volume15

Reverse relations

cites work (P2860)
Q35933571A Computational Solution to Automatically Map Metabolite Libraries in the Context of Genome Scale Metabolic Networks
Q60046913A Genome-Scale Metabolic Model for (Bath) Suggests Reduced Efficiency Electron Transfer to the Particulate Methane Monooxygenase
Q30728848A data integration and visualization resource for the metabolic network of Synechocystis sp. PCC 6803.
Q52350929A review of computational tools for design and reconstruction of metabolic pathways.
Q42737166A review of parameters and heuristics for guiding metabolic pathfinding
Q34636456A systematic comparison of the MetaCyc and KEGG pathway databases
Q38386368BiKEGG: a COBRA toolbox extension for bridging the BiGG and KEGG databases
Q35913364Characterising Complex Enzyme Reaction Data.
Q38820157ChloroKB: A Web Application for the Integration of Knowledge Related to Chloroplast Metabolic Network.
Q60043887Combining multiple functional annotation tools increases coverage of metabolic annotation
Q38715258Computational methods to identify metabolic sub-networks based on metabolomic profiles.
Q64250311Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling
Q26851071Current state of genome-scale modeling in filamentous fungi
Q36113991Efficient Reconstruction of Predictive Consensus Metabolic Network Models.
Q58726514Evolution of gene knockout strains of E. coli reveal regulatory architectures governed by metabolism
Q37233565Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome
Q47403037Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism
Q92537815Genome-Scale Metabolic Reconstruction of Acetobacter pasteurianus 386B, a Candidate Functional Starter Culture for Cocoa Bean Fermentation
Q35905001Integration and Validation of the Genome-Scale Metabolic Models of Pichia pastoris: A Comprehensive Update of Protein Glycosylation Pathways, Lipid and Energy Metabolism
Q31148049Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes
Q28077746Internet Databases of the Properties, Enzymatic Reactions, and Metabolism of Small Molecules-Search Options and Applications in Food Science
Q34464555MC3: a steady-state model and constraint consistency checker for biochemical networks
Q27943500Many InChIs and quite some feat
Q36683461MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.
Q36434651MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks
Q55709284Metabolomics in Plant Priming Research: The Way Forward?
Q28652349Path2Models: large-scale generation of computational models from biochemical pathway maps
Q30876427Pathomx: an interactive workflow-based tool for the analysis of metabolomic data
Q30902292Reconstruction of genome-scale human metabolic models using omics data
Q33869126Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production
Q35622724The SwissLipids knowledgebase for lipid biology
Q39969726The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis
Q28817802Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond
Q28584434Updates in Rhea - an expert curated resource of biochemical reactions
Q35254873Updates in Rhea--a manually curated resource of biochemical reactions

Search more.