Rhea--a manually curated resource of biochemical reactions

scientific article published on December 2011

Rhea--a manually curated resource of biochemical reactions is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/nar/AlcantaraAMBCBCMETOBXS12
P356DOI10.1093/NAR/GKR1126
P932PMC publication ID3245052
P698PubMed publication ID22135291
P5875ResearchGate publication ID51847572

P50authorChristoph SteinbeckQ5111731
Lydie BougueleretQ80061436
Gareth OwenQ55095454
Eugeni BeldaQ56503337
Elisabeth CoudertQ56604103
Anne MorgatQ56604104
Kristian B AxelsenQ56604106
Rafael AlcántaraQ25648197
Paula de MatosQ29032923
Ioannis XenariosQ42233078
Alan J BridgeQ42745470
Marcus EnnisQ49409340
P2093author name stringHong Cao
Steve Turner
P2860cites workEnabling the exploration of biochemical pathwaysQ80981529
Reactome knowledgebase of human biological pathways and processes.Q51636523
Challenges to be faced in the reconstruction of metabolic networks from public databases.Q51933078
pK a Prediction for Organic Acids and BasesQ55921625
The ENZYME database in 2000Q22242849
IntEnz, the integrated relational enzyme databaseQ24599172
EcoCyc: a comprehensive database of Escherichia coli biologyQ24612081
BRENDA, the enzyme information system in 2011Q24613881
Ongoing and future developments at the Universal Protein ResourceQ24616298
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databasesQ24643451
KEGG for representation and analysis of molecular networks involving diseases and drugsQ24644514
Chemical Entities of Biological Interest: an updateQ24644887
EzCatDB: the Enzyme Catalytic-mechanism DatabaseQ24795691
Chemical Markup, XML, and the World Wide Web. 6. CMLReact, an XML Vocabulary for Chemical ReactionsQ27162658
Description of several chemical structure file formats used by computer programs developed at Molecular Design LimitedQ27783587
The BioPAX community standard for pathway data sharingQ27987775
OrChem - An open source chemistry search engine for Oracle(R)Q27998666
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanismsQ28539756
Reconstruction of biochemical networks in microorganismsQ29616018
Reconciliation of genome-scale metabolic reconstructions for comparative systems analysisQ30432712
Storing and annotating of kinetic dataQ33297803
Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implicationQ33625169
Integration of metabolic databases for the reconstruction of genome-scale metabolic networksQ33659541
UniPathway: a resource for the exploration and annotation of metabolic pathwaysQ35631060
ExplorEnz: the primary source of the IUBMB enzyme listQ37262706
BKM-react, an integrated biochemical reaction databaseQ38322520
OrChem: an open source chemistry search engine for Oracle.Q47141154
P275copyright licenseCreative Commons Attribution-NonCommercial 3.0 UnportedQ18810331
P6216copyright statuscopyrightedQ50423863
P433issueDatabase issue
P407language of work or nameEnglishQ1860
P921main subjectRheaQ24265951
P304page(s)D754-60
P577publication date2011-12-01
P1433published inNucleic Acids ResearchQ135122
P1476titleRhea--a manually curated resource of biochemical reactions
P478volume40

Reverse relations

cites work (P2860)
Q28468365A Method for Finding Metabolic Pathways Using Atomic Group Tracking
Q38471816A chemical specialty semantic network for the Unified Medical Language System
Q123351375A comparison of approaches to accessing existing biological and chemical relational databases via SPARQL
Q52350929A review of computational tools for design and reconstruction of metabolic pathways.
Q34636456A systematic comparison of the MetaCyc and KEGG pathway databases
Q59210543Accurate Microbial Genome Annotation Using an Integrated and User-Friendly Environment for Community Expertise of Gene Functions: The MicroScope Platform
Q40426966BioSynther: a customized biosynthetic potential explorer
Q35913364Characterising Complex Enzyme Reaction Data.
Q34878068Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology
Q56887734Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
Q38063161Genome-scale metabolic model in guiding metabolic engineering of microbial improvement
Q35141420Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction
Q28652732Integrated network analysis and effective tools in plant systems biology.
Q28597525Mapping the patent landscape of synthetic biology for fine chemical production pathways
Q92212199Metabolic disassembler for understanding and predicting the biosynthetic units of natural products
Q38292789Metabolic network discovery by top-down and bottom-up approaches and paths for reconciliation
Q41767208Metabolic tinker: an online tool for guiding the design of synthetic metabolic pathways
Q30578902MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
Q37086813Molecular tools for chemical biotechnology.
Q38218293Profiling the orphan enzymes
Q28038504Reaction Decoder Tool (RDT): extracting features from chemical reactions
Q37497795Reconciliation of metabolites and biochemical reactions for metabolic networks
Q28085024Synthetic biology outside the cell: linking computational tools to cell-free systems
Q28540893Text-mining-assisted biocuration workflows in Argo
Q28484023The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes
Q28710191The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013
Q34313323The EBI enzyme portal
Q24465922The InterPro protein families database: the classification resource after 15 years
Q24567743The Reactome pathway knowledgebase
Q29547457UniProt: a hub for protein information
Q28584434Updates in Rhea - an expert curated resource of biochemical reactions
Q35254873Updates in Rhea--a manually curated resource of biochemical reactions
Q42724491XTMS: pathway design in an eXTended metabolic space

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