scholarly article | Q13442814 |
P50 | author | Ching-Feng Weng | Q43275475 |
P2093 | author name string | Max K Leong | |
Yi-Lung Ding | |||
Ren-Guei Syu | |||
P2860 | cites work | Gene Selection for Cancer Classification using Support Vector Machines | Q56535529 |
Virtual screening of organic molecule databases. Design of focused libraries of potential ligands of NMDA and AMPA receptors | Q56983093 | ||
Synthesis and excitatory amino acid pharmacology of a series of heterocyclic-fused quinoxalinones and quinazolinones | Q67542644 | ||
Scoring noncovalent protein-ligand interactions: a continuous differentiable function tuned to compute binding affinities | Q71851460 | ||
LigScore: a novel scoring function for predicting binding affinities | Q81552453 | ||
Comparative studies on some metrics for external validation of QSPR models | Q83142287 | ||
Subunit-specific roles of glycine-binding domains in activation of NR1/NR3 N-methyl-D-aspartate receptors | Q24307479 | ||
A nomenclature for ligand-gated ion channels | Q24609005 | ||
Flexible ligand docking using conformational ensembles | Q24673137 | ||
Novel NMDA receptor modulators: an update | Q26849614 | ||
Virtual screening using protein-ligand docking: avoiding artificial enrichment | Q53639582 | ||
Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes | Q53678858 | ||
Neural network studies. 1. Comparison of overfitting and overtraining | Q55968238 | ||
Averaged shifted histogram | Q56049050 | ||
NMDA receptor modulators: an updated patent review (2013-2014) | Q26997407 | ||
Mechanisms of activation, inhibition and specificity: crystal structures of the NMDA receptor NR1 ligand-binding core | Q27641433 | ||
Ligand-specific deactivation time course of GluN1/GluN2D NMDA receptors | Q27667580 | ||
Subunit arrangement and phenylethanolamine binding in GluN1/GluN2B NMDA receptors | Q27670455 | ||
Conformational Analysis of NMDA Receptor GluN1, GluN2, and GluN3 Ligand-Binding Domains Reveals Subtype-Specific Characteristics | Q27679791 | ||
Crystal Structure and Pharmacological Characterization of a Novel N-Methyl-D-aspartate (NMDA) Receptor Antagonist at the GluN1 Glycine Binding Site | Q27680080 | ||
Structural Insights into Competitive Antagonism in NMDA Receptors | Q27681450 | ||
Crystal structure of a heterotetrameric NMDA receptor ion channel | Q27684006 | ||
NMDA receptor structures reveal subunit arrangement and pore architecture | Q27684638 | ||
Positive Allosteric Modulators of GluN2A-Containing NMDARs with Distinct Modes of Action and Impacts on Circuit Function | Q27704016 | ||
LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions | Q27861128 | ||
QSAR modeling: where have you been? Where are you going to? | Q28222668 | ||
PMF scoring revisited | Q28265646 | ||
Comparison of consensus scoring strategies for evaluating computational models of protein-ligand complexes | Q28292827 | ||
A machine learning-based method to improve docking scoring functions and its application to drug repurposing | Q28304560 | ||
L-701,324, a selective antagonist at the glycine site of the NMDA receptor, counteracts haloperidol-induced muscle rigidity in rats | Q28377268 | ||
Application of Consensus Scoring and Principal Component Analysis for Virtual Screening against β-Secretase (BACE-1) | Q28484175 | ||
Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94 | Q28842789 | ||
Development and testing of a general amber force field | Q29547642 | ||
A critical assessment of docking programs and scoring functions | Q29616761 | ||
CSAR Benchmark Exercise 2011–2012: Evaluation of Results from Docking and Relative Ranking of Blinded Congeneric Series | Q30543685 | ||
Evaluation of docking performance: comparative data on docking algorithms | Q30889483 | ||
How does consensus scoring work for virtual library screening? An idealized computer experiment | Q31017163 | ||
Tandem 3D-QSARs approach as a valuable tool to predict binding affinity data: design of new Gly/NMDA receptor antagonists as a key study. | Q31122723 | ||
Rational selection of training and test sets for the development of validated QSAR models | Q31165909 | ||
GFscore: a general nonlinear consensus scoring function for high-throughput docking | Q33251333 | ||
SeleX-CS: a new consensus scoring algorithm for hit discovery and lead optimization | Q33410990 | ||
Target-specific support vector machine scoring in structure-based virtual screening: computational validation, in vitro testing in kinases, and effects on lung cancer cell proliferation | Q33856208 | ||
NMDA receptor subunits: diversity, development and disease | Q33950711 | ||
Mechanism of partial agonist action at the NR1 subunit of NMDA receptors | Q33988352 | ||
Mechanistic insights into xenon inhibition of NMDA receptors from MD simulations | Q33990281 | ||
Real External Predictivity of QSAR Models. Part 2. New Intercomparable Thresholds for Different Validation Criteria and the Need for Scatter Plot Inspection | Q34283181 | ||
Docking and scoring in virtual screening for drug discovery: methods and applications | Q34364227 | ||
Comparative assessment of scoring functions on an updated benchmark: 1. Compilation of the test set. | Q34414478 | ||
1-Substituted pyrazolo[1,5-c]quinazolines as novel Gly/NMDA receptor antagonists: synthesis, biological evaluation, and molecular modeling study | Q46640611 | ||
Molecular docking to ensembles of protein structures | Q46668232 | ||
ID-Score: A New Empirical Scoring Function Based on a Comprehensive Set of Descriptors Related to Protein–Ligand Interactions | Q46690363 | ||
3-Hydroxy-1H-quinazoline-2,4-dione derivatives as new antagonists at ionotropic glutamate receptors: molecular modeling and pharmacological studies | Q46885828 | ||
The N-terminal domain of the GluN3A subunit determines the efficacy of glycine-activated NMDA receptors | Q48559577 | ||
Numerical Errors and Chaotic Behavior in Docking Simulations | Q48562868 | ||
Substituted indole-2-carboxylates as in vivo potent antagonists acting as the strychnine-insensitive glycine binding site | Q48765974 | ||
Ifenprodil discriminates subtypes of the N-methyl-D-aspartate receptor: selectivity and mechanisms at recombinant heteromeric receptors | Q49132765 | ||
Application of Genetic Function Approximation to Quantitative Structure-Activity Relationships and Quantitative Structure-Property Relationships | Q51614833 | ||
Supervised consensus scoring for docking and virtual screening | Q51994661 | ||
Protein-based virtual screening of chemical databases. 1. Evaluation of different docking/scoring combinations | Q52069951 | ||
Consensus scoring: A method for obtaining improved hit rates from docking databases of three-dimensional structures into proteins | Q52132563 | ||
A general and fast scoring function for protein-ligand interactions: a simplified potential approach | Q52222006 | ||
Giant nonlinear response from plasmonic metasurfaces coupled to intersubband transitions. | Q53510846 | ||
Characterization of protein conformational states by normal-mode frequencies | Q53564115 | ||
Molecular recognition of the inhibitor AG-1343 by HIV-1 protease: conformationally flexible docking by evolutionary programming | Q34447822 | ||
Optimization of molecular docking scores with support vector rank regression | Q34625066 | ||
NMDA receptor subunit diversity: impact on receptor properties, synaptic plasticity and disease | Q34651972 | ||
Structure-based discovery of antagonists for GluN3-containing N-methyl-D-aspartate receptors | Q34968786 | ||
Predicting protein functions using incomplete hierarchical labels | Q35543419 | ||
Machine-learning scoring functions for identifying native poses of ligands docked to known and novel proteins | Q35558950 | ||
Docking and Scoring with Target-Specific Pose Classifier Succeeds in Native-Like Pose Identification But Not Binding Affinity Prediction in the CSAR 2014 Benchmark Exercise | Q35981309 | ||
Describing the validity of carcinogen screening tests | Q36042747 | ||
Agonist binding to the NMDA receptor drives movement of its cytoplasmic domain without ion flow. | Q36332086 | ||
Consensus scoring for protein-ligand interactions | Q36458866 | ||
What is a support vector machine? | Q36679246 | ||
Protons Potentiate GluN1/GluN3A Currents by Attenuating Their Desensitisation. | Q36713681 | ||
Stereoselectivity in drug metabolism | Q36788391 | ||
[3H]MDL 105,519, a high-affinity radioligand for the N-methyl-D-aspartate receptor-associated glycine recognition site. | Q36825802 | ||
Evaluation of the performance of 3D virtual screening protocols: RMSD comparisons, enrichment assessments, and decoy selection--what can we learn from earlier mistakes? | Q37057393 | ||
Rescoring ligand docking poses. | Q37742544 | ||
Structural ensemble in computational drug screening | Q37750881 | ||
GluN3 subunit-containing NMDA receptors: not just one-trick ponies | Q37975344 | ||
Latest developments in molecular docking: 2010–2011 in review | Q38092807 | ||
Targeting of NMDA receptors in new treatments for schizophrenia | Q38223276 | ||
NMDARs in neurological diseases: a potential therapeutic target | Q38232734 | ||
In silico Prediction of Aqueous Solubility: a Comparative Study of Local and Global Predictive Models | Q39525606 | ||
Prediction of Protein-Ligand Binding Poses via a Combination of Induced Fit Docking and Metadynamics Simulations | Q39795344 | ||
Synthesis, structural activity-relationships, and biological evaluation of novel amide-based allosteric binding site antagonists in NR1A/NR2B N-methyl-D-aspartate receptors | Q39818021 | ||
Glycine/NMDA receptor antagonists as potential CNS therapeutic agents: ACEA-1021 and related compounds | Q40322844 | ||
Structural Basis for Negative Allosteric Modulation of GluN2A-Containing NMDA Receptors | Q41159277 | ||
Consensus scoring for ligand/protein interactions | Q42670601 | ||
QSAR modeling and prediction of the endocrine-disrupting potencies of brominated flame retardants | Q43090710 | ||
Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments | Q44012277 | ||
CoMFA and homology-based models of the glycine binding site of N-methyl-d-aspartate receptor | Q44406084 | ||
Comparative evaluation of 11 scoring functions for molecular docking | Q44457437 | ||
The ensemble performance index: an improved measure for assessing ensemble pose prediction performance. | Q44636889 | ||
Model structures of the N-methyl-D-aspartate receptor subunit NR1 explain the molecular recognition of agonist and antagonist ligands | Q44762506 | ||
SFCscoreRF: A Random Forest-Based Scoring Function for Improved Affinity Prediction of Protein–Ligand Complexes | Q45805013 | ||
In Silico Predictions of Human Skin Permeability using Nonlinear Quantitative Structure-Property Relationship Models. | Q45955189 | ||
Predicting mutagenicity of aromatic amines by various machine learning approaches. | Q45962910 | ||
Protein docking using surface matching and supervised machine learning. | Q45965397 | ||
Combination of a naive Bayes classifier with consensus scoring improves enrichment of high-throughput docking results. | Q45966697 | ||
P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
P6216 | copyright status | copyrighted | Q50423863 |
P407 | language of work or name | English | Q1860 |
P921 | main subject | ligand binding | Q61659151 |
P304 | page(s) | 40053 | |
P577 | publication date | 2017-01-06 | |
P1433 | published in | Scientific Reports | Q2261792 |
P1476 | title | Prediction of N-Methyl-D-Aspartate Receptor GluN1-Ligand Binding Affinity by a Novel SVM-Pose/SVM-Score Combinatorial Ensemble Docking Scheme | |
P478 | volume | 7 |
Q64121450 | Exponential consensus ranking improves the outcome in docking and receptor ensemble docking |
Q93126855 | Molecular Docking: Shifting Paradigms in Drug Discovery |
Q91012235 | Natural phenolic compounds potentiate hypoglycemia via inhibition of Dipeptidyl peptidase IV |
Q47355897 | Potential natural mTOR inhibitors screened by in silico approach and suppress hepatic stellate cells activation. |
Q90291678 | The perceptions of natural compounds against dipeptidyl peptidase 4 in diabetes: from in silico to in vivo |
Q90420762 | Theoretical Prediction of the Complex P-Glycoprotein Substrate Efflux Based on the Novel Hierarchical Support Vector Regression Scheme |
Search more.