Bioinformatics facilitating the use of microarrays to delineate potential miRNA biomarkers in aristolochic acid nephropathy

scientific article published on 13 July 2016

Bioinformatics facilitating the use of microarrays to delineate potential miRNA biomarkers in aristolochic acid nephropathy is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.18632/ONCOTARGET.10586
P932PMC publication ID5239550
P698PubMed publication ID27418141

P2093author name stringXi Chen
Qiang Li
Haitao Lu
Qiao Su
Yumei Que
Yana Lv
P2860cites workAccurate microRNA target prediction correlates with protein repression levelsQ21284375
Fast and effective prediction of microRNA/target duplexesQ24537313
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Downregulation of p53-inducible microRNAs 192, 194, and 215 impairs the p53/MDM2 autoregulatory loop in multiple myeloma developmentQ24628811
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Analysis of TP53 mutation spectra reveals the fingerprint of the potent environmental carcinogen, aristolochic acidQ27021933
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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targetsQ27860792
Switching from repression to activation: microRNAs can up-regulate translationQ28131790
Missing value estimation methods for DNA microarraysQ28200763
Rapidly progressive interstitial renal fibrosis in young women: association with slimming regimen including Chinese herbsQ28248709
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limmaGUI: a graphical user interface for linear modeling of microarray dataQ33205531
Activation of p53 promotes renal injury in acute aristolochic acid nephropathyQ33562197
p53-Responsive micrornas 192 and 215 are capable of inducing cell cycle arrestQ33719450
p53 is positively regulated by miR-542-3pQ33758261
Interstitial fibrosis is associated with increased COL1A2 transcription in AA-injured renal tubular epithelial cells in vivo.Q34001986
Ten novel RB1 gene mutations in patients with retinoblastoma.Q34007805
Unambiguous detection of multiple TP53 gene mutations in AAN-associated urothelial cancer in Belgium using laser capture microdissectionQ34128720
Induction of growth arrest by miR-542-3p that targets survivin.Q34132476
Tumour suppressor microRNA-584 directly targets oncogene Rock-1 and decreases invasion ability in human clear cell renal cell carcinomaQ34152578
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Expression of histone deacetylase-1 and p300 in aristolochic acid nephropathy modelsQ87812146
Impact of miR-21, miR-126 and miR-221 as prognostic factors of clear cell renal cell carcinoma with tumor thrombus of the inferior vena cavaQ34287632
microRNA-192, -194 and -215 are frequently downregulated in colorectal cancerQ34299181
Pathologic aspects of a newly described nephropathy related to the prolonged use of Chinese herbsQ34331393
MicroRNA-584 and the protein phosphatase and actin regulator 1 (PHACTR1), a new signaling route through which transforming growth factor-β Mediates the migration and actin dynamics of breast cancer cellsQ34332277
MicroRNA-24 antagonism prevents renal ischemia reperfusion injuryQ34568822
Aristolochic acid suppresses DNA repair and triggers oxidative DNA damage in human kidney proximal tubular cells.Q34620119
microRNA-450a targets DNA methyltransferase 3a in hepatocellular carcinoma.Q36230642
MicroRNA-218 inhibits cell cycle progression and promotes apoptosis in colon cancer by downregulating BMI1 polycomb ring finger oncogeneQ36621766
Chemical and molecular basis of the carcinogenicity of Aristolochia plantsQ37371808
Screening plasma miRNAs as biomarkers for renal ischemia-reperfusion injury in ratsQ37607442
A PTBA small molecule enhances recovery and reduces postinjury fibrosis after aristolochic acid-induced kidney injuryQ37629173
miR-33a is up-regulated in chemoresistant osteosarcoma and promotes osteosarcoma cell resistance to cisplatin by down-regulating TWIST.Q37681865
The long and short of microRNA.Q38102186
Network pharmacology in traditional chinese medicine.Q38269825
Gene expression changes induced by the human carcinogen aristolochic acid I in renal and hepatic tissue of miceQ38507093
miRNA-34a suppresses cell proliferation and metastasis by targeting CD44 in human renal carcinoma cellsQ38991056
miR-584 expressed in human gingival epithelial cells is induced by Porphyromonas gingivalis stimulation and regulates interleukin-8 production via lactoferrin receptorQ39063258
miR-192, miR-194 and miR-215: a convergent microRNA network suppressing tumor progression in renal cell carcinomaQ39146500
JNK-dependent AP-1 activation is required for aristolochic acid-induced TGF-β1 synthesis in human renal proximal epithelial cells.Q39375030
The proto-oncogene Pim-1 is a target of miR-33aQ39509450
MicroRNA replacement therapy for miR-145 and miR-33a is efficacious in a model of colon carcinomaQ39521098
miR-192/miR-215 influence 5-fluorouracil resistance through cell cycle-mediated mechanisms complementary to its post-transcriptional thymidilate synthase regulation.Q39677748
Mechanism of chronic aristolochic acid nephropathy: role of Smad3.Q39749821
A network pharmacology approach to determine active compounds and action mechanisms of ge-gen-qin-lian decoction for treatment of type 2 diabetesQ41907526
Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sitesQ42419115
Induction of urothelial proliferation in rats by aristolochic acid through cell cycle progression via activation of cyclin D1/cdk4 and cyclin E/cdk2.Q42481303
Expression of cell cycle regulatory factors hus1, gadd45a, rb1, cdkn2a and mre11a correlates with expression of clock gene per2 in human colorectal carcinoma tissueQ44484798
Aristolochic acid (AA)-DNA adduct as marker of AA exposure and risk factor for AA nephropathy-associated cancerQ45011091
Polymorphisms of the pri-miR-34b/c promoter and TP53 codon 72 are associated with risk of colorectal cancerQ45740901
miR-192 induces G2/M growth arrest in aristolochic acid nephropathyQ45841408
TGF-beta 1/Smads signaling stimulates renal interstitial fibrosis in experimental AAN.Q45916809
TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples.Q45963529
A novel network pharmacology approach to analyse traditional herbal formulae: the Liu-Wei-Di-Huang pill as a case studyQ47673982
Molecular markers in upper urothelial carcinoma associated to Balkan endemic nephropathy. Aristolochic acid as the major risk factor of the worldwide disease.Q53353065
Coordinated regulation of cell cycle transcripts by p53-Inducible microRNAs, miR-192 and miR-215.Q53431796
microRNA-183 plays as oncogenes by increasing cell proliferation, migration and invasion via targeting protein phosphatase 2A in renal cancer cells.Q54193852
[Expression and significance of microRNAs in the p53 pathway in ovarian cancer cells and serous ovarian cancer tissues].Q54323844
Exceptionally long-term persistence of DNA adducts formed by carcinogenic aristolochic acid I in renal tissue from patients with aristolochic acid nephropathyQ56267128
Probenecid prevents acute tubular necrosis in a mouse model of aristolochic acid nephropathyQ61775751
[MicroRNAs and kidneys]Q85271214
P4510describes a project that usesCytoscapeQ3699942
limmaQ112236343
P433issue32
P407language of work or nameEnglishQ1860
P921main subjectbioinformaticsQ128570
biomarkerQ864574
P304page(s)52270-52280
P577publication date2016-07-13
P1433published inOncotargetQ1573155
P1476titleBioinformatics facilitating the use of microarrays to delineate potential miRNA biomarkers in aristolochic acid nephropathy
P478volume7

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cites work (P2860)
Q50068087Investigation into the underlying molecular mechanisms of hypertensive nephrosclerosis using bioinformatics analyses
Q65001396Systematic Overview of Aristolochic Acids: Nephrotoxicity, Carcinogenicity, and Underlying Mechanisms.
Q64072379TNF-α-induced miR-450a mediates TMEM182 expression to promote oral squamous cell carcinoma motility

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