| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bioinformatics/WettenhallS04 |
| P356 | DOI | 10.1093/BIOINFORMATICS/BTH449 |
| P698 | PubMed publication ID | 15297296 |
| P5875 | ResearchGate publication ID | 8414399 |
| P50 | author | Gordon K Smyth | Q37391308 |
| P2093 | author name string | James M Wettenhall | |
| P433 | issue | 18 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | graphical user interface | Q782543 |
| P304 | page(s) | 3705-3706 | |
| P577 | publication date | 2004-08-05 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | limmaGUI: a graphical user interface for linear modeling of microarray data | |
| P478 | volume | 20 |
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| Q34163682 | Mixing of Honeybees with Different Genotypes Affects Individual Worker Behavior and Transcription of Genes in the Neuronal Substrate |
| Q33312958 | Molecular characterization of spontaneous mesenchymal stem cell transformation |
| Q33346266 | Molecular processes underlying the floral transition in the soybean shoot apical meristem |
| Q31020252 | Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis |
| Q44779374 | Multiple roles for UV RESISTANCE LOCUS8 in regulating gene expression and metabolite accumulation in Arabidopsis under solar ultraviolet radiation |
| Q27321487 | NDR Kinases Are Essential for Somitogenesis and Cardiac Looping during Mouse Embryonic Development |
| Q39682752 | NOD-Like Receptor Signaling in Cholesteatoma |
| Q89862185 | Network-Based Genetic Profiling Reveals Cellular Pathway Differences Between Follicular Thyroid Carcinoma and Follicular Thyroid Adenoma |
| Q38718928 | Neurocalcin Delta Suppression Protects against Spinal Muscular Atrophy in Humans and across Species by Restoring Impaired Endocytosis |
| Q30484779 | Neurological and behavioral abnormalities, ventricular dilatation, altered cellular functions, inflammation, and neuronal injury in brains of mice due to common, persistent, parasitic infection |
| Q46215561 | Nitric oxide modulates ozone-induced cell death, hormone biosynthesis and gene expression in Arabidopsis thaliana |
| Q34408785 | Nitrogen stress response of a hybrid species: a gene expression study |
| Q39738560 | Nocturnal changes in leaf growth of Populus deltoides are controlled by cytoplasmic growth |
| Q35778751 | Novel miRNA-31 and miRNA-200a-Mediated Regulation of Retinoblastoma Proliferation |
| Q33354135 | Novel microRNA candidates and miRNA-mRNA pairs in embryonic stem (ES) cells |
| Q34673186 | Novel molecular pathways elicited by mutant FGFR2 may account for brain abnormalities in Apert syndrome |
| Q42929620 | Nuclear receptor DHR96 acts as a sentinel for low cholesterol concentrations in Drosophila melanogaster |
| Q34928438 | Nucleotide-binding oligomerization domain containing-like receptor family, caspase recruitment domain (CARD) containing 4 (NLRC4) regulates intrapulmonary replication of aerosolized Legionella pneumophila |
| Q39093629 | Obesity and ischemic stroke modulate the methylation levels of KCNQ1 in white blood cells. |
| Q39126000 | Oncolytic effects of parvovirus H-1 in medulloblastoma are associated with repression of master regulators of early neurogenesis |
| Q46454893 | Organ specificity of beta-carotene induced lung gene-expression changes in Bcmo1-/- mice |
| Q97418214 | PDXGEM: patient-derived tumor xenograft-based gene expression model for predicting clinical response to anticancer therapy in cancer patients |
| Q35581720 | Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans |
| Q42183671 | ParkDB: a Parkinson's disease gene expression database |
| Q30835675 | Pathways of aging: comparative analysis of gene signatures in replicative senescence and stress induced premature senescence |
| Q33771704 | Peripheral nerve morphogenesis induced by scaffold micropatterning |
| Q37739177 | Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer |
| Q38479463 | Photoperiodic control of carbon distribution during the floral transition in Arabidopsis. |
| Q35577118 | Post-fasting olfactory, transcriptional, and feeding responses in Drosophila |
| Q26784048 | Preclinical Childhood Sarcoma Models: Drug Efficacy Biomarker Identification and Validation |
| Q46041967 | Priming for enhanced defence responses by specific inhibition of the Arabidopsis response to coronatine |
| Q37457708 | Profiling of high-grade central osteosarcoma and its putative progenitor cells identifies tumourigenic pathways. |
| Q21267234 | Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements |
| Q38295952 | Pronephric tubule morphogenesis in zebrafish depends on Mnx mediated repression of irx1b within the intermediate mesoderm |
| Q36023909 | Protein kinase C delta is essential for optimal macrophage-mediated phagosomal containment of Listeria monocytogenes. |
| Q53146495 | Pyrroloquinoline quinone and a quinoprotein kinase support γ‐radiation resistance in Deinococcus radiodurans and regulate gene expression |
| Q33839347 | Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions |
| Q38882933 | REGγ is critical for skin carcinogenesis by modulating the Wnt/β-catenin pathway. |
| Q33413982 | RGG: a general GUI Framework for R scripts |
| Q30817510 | RNASeqGUI: a GUI for analysing RNA-Seq data |
| Q39717028 | Recruitment of MBD1 to target genes requires sequence-specific interaction of the MBD domain with methylated DNA |
| Q35675222 | Regulation of Peripheral Nerve Myelin Maintenance by Gene Repression through Polycomb Repressive Complex 2 |
| Q35092975 | Regulation of chondrocyte gene expression by osteogenic protein-1 |
| Q41481133 | Remarkable stability in patterns of blood-stage gene expression during episodes of non-lethal Plasmodium yoelii malaria |
| Q27027775 | Review of processing and analysis methods for DNA methylation array data |
| Q33554103 | Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis |
| Q33382736 | Role for MKL1 in megakaryocytic maturation |
| Q45837932 | Roles of CAMTA transcription factors and salicylic acid in configuring the low‐temperature transcriptome and freezing tolerance of Arabidopsis |
| Q33873682 | S100A8 and S100A9 in experimental osteoarthritis. |
| Q34124925 | SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation |
| Q34088625 | SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus. |
| Q33548500 | SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea. |
| Q46112587 | Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). |
| Q33298670 | Salmonella induces prominent gene expression in the rat colon |
| Q37277686 | Screening biomarkers of prostate cancer by integrating microRNA and mRNA microarrays |
| Q27939887 | Sfl1p acts as an activator of the HSP30 gene in Saccharomyces cerevisiae |
| Q33705247 | Six1 promotes epithelial-mesenchymal transition and malignant conversion in human papillomavirus type 16-immortalized human keratinocytes. |
| Q41994842 | Smad4 haploinsufficiency: a matter of dosage |
| Q37492886 | Spatiotemporal control of interferon-induced JAK/STAT signalling and gene transcription by the retromer complex. |
| Q38794482 | Spheroid culture of LuCaP 136 patient-derived xenograft enables versatile preclinical models of prostate cancer. |
| Q30585006 | Spheroid culture of LuCaP 147 as an authentic preclinical model of prostate cancer subtype with SPOP mutation and hypermutator phenotype |
| Q34012411 | Splicing and splice factor SRp55 participate in the response to DNA damage by changing isoform ratios of target genes |
| Q33755247 | Stability of gene expression and epigenetic profiles highlights the utility of patient-derived paediatric acute lymphoblastic leukaemia xenografts for investigating molecular mechanisms of drug resistance |
| Q33808990 | Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host |
| Q47610713 | Statistical and integrative system-level analysis of DNA methylation data |
| Q37431426 | Sterol and diacylglycerol acyltransferase deficiency triggers fatty acid-mediated cell death |
| Q35996599 | Stochastic epigenetic outliers can define field defects in cancer |
| Q37118810 | Structure and expression analysis of rice paleo duplications |
| Q41811101 | Subpopulation-specific transcriptome analysis of competence-stimulating-peptide-induced Streptococcus mutans |
| Q39101609 | Suppression of FOXO1 is responsible for a growth regulatory repressive transcriptional sub-signature of EWS-FLI1 in Ewing sarcoma. |
| Q39800101 | Synergistic proapoptotic effects of the two tyrosine kinase inhibitors pazopanib and lapatinib on multiple carcinoma cell lines |
| Q28587166 | Systems biology approach to identify transcriptome reprogramming and candidate microRNA targets during the progression of polycystic kidney disease |
| Q47098327 | Systems-epigenomics inference of transcription factor activity implicates aryl-hydrocarbon-receptor inactivation as a key event in lung cancer development. |
| Q40476069 | T-cell Receptor Signaling Activates an ITK/NF-κB/GATA-3 axis in T-cell Lymphomas Facilitating Resistance to Chemotherapy. |
| Q37577414 | TALEN/CRISPR-mediated engineering of a promoterless anti-viral RNAi hairpin into an endogenous miRNA locus |
| Q92383142 | TBX2 Identified as a Potential Predictor of Bone Metastasis in Lung Adenocarcinoma via Integrated Bioinformatics Analyses and Verification of Functional Assay |
| Q34107818 | THEME: A web tool for loop-design microarray data analysis |
| Q36247028 | TMEM106B, the Risk Gene for Frontotemporal Dementia, Is Regulated by the microRNA-132/212 Cluster and Affects Progranulin Pathways |
| Q24337668 | TMEM203 Is a Novel Regulator of Intracellular Calcium Homeostasis and Is Required for Spermatogenesis |
| Q91687496 | Taking Advantage of the Selectivity of Histone Deacetylases and Phosphodiesterase Inhibitors to Design Better Therapeutic Strategies to Treat Alzheimer's Disease |
| Q39262489 | Tcf15 primes pluripotent cells for differentiation. |
| Q35844354 | Temperature-dependent expression of Listeria monocytogenes internalin and internalin-like genes suggests functional diversity of these proteins among the listeriae |
| Q54382772 | Testicular Gene Expression in Cryptorchid Boys at Risk of Azoospermia |
| Q33786169 | The 'PUCE CAFE' Project: the first 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits |
| Q33318567 | The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology |
| Q39785267 | The Arf tumor suppressor protein inhibits Miz1 to suppress cell adhesion and induce apoptosis |
| Q51568946 | The MADS29 Transcription Factor Regulates the Degradation of the Nucellus and the Nucellar Projection during Rice Seed Development |
| Q39432100 | The Wnt secretion protein Evi/Gpr177 promotes glioma tumourigenesis |
| Q84043532 | The alternative complement pathway seems to be a UVA sensor that leads to systemic immunosuppression |
| Q37326495 | The caspase-cleaved form of LYN mediates a psoriasis-like inflammatory syndrome in mice. |
| Q47108295 | The cell-type specific transcriptome in human adipose tissue and influence of obesity on adipocyte progenitors. |
| Q38341985 | The delta subunit of RNA polymerase, RpoE, is a global modulator of Streptococcus mutans environmental adaptation |
| Q82588243 | The heat-inducible transcription factor HsfA2 enhances anoxia tolerance in Arabidopsis |
| Q37012928 | The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability |
| Q37288532 | The homeobox gene MEIS1 is methylated in BRAF (p.V600E) mutated colon tumors |
| Q28743650 | The leukemia-specific fusion gene ETV6/RUNX1 perturbs distinct key biological functions primarily by gene repression |
| Q35499809 | The molecular signature of the stroma response in prostate cancer-induced osteoblastic bone metastasis highlights expansion of hematopoietic and prostate epithelial stem cell niches |
| Q37203595 | The multi-omic landscape of transcription factor inactivation in cancer |
| Q33386662 | The noncanonical WNT pathway is operative in idiopathic pulmonary arterial hypertension |
| Q24307869 | The novel small leucine-rich protein chondroadherin-like (CHADL) is expressed in cartilage and modulates chondrocyte differentiation |
| Q33916346 | The organophosphate Chlorpyrifos interferes with the responses to 17β-estradiol in the digestive gland of the marine mussel Mytilus galloprovincialis |
| Q40537002 | The primary immune response to Vaccinia virus vaccination includes cells with a distinct cytotoxic effector CD4 T-cell phenotype. |
| Q33939751 | The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins. |
| Q41681563 | The role of the Janus-faced transcription factor PAX5-JAK2 in acute lymphoblastic leukemia |
| Q38842819 | The transcription cofactor c-JUN mediates phenotype switching and BRAF inhibitor resistance in melanoma |
| Q48052580 | The transcriptomic response to thermal stress is immediate, transient and potentiated by ultraviolet radiation in the sea anemone Anemonia viridis. |
| Q28586338 | Total particulate matter concentration skews cigarette smoke's gene expression profile |
| Q83219312 | Transcript profiling of chitosan-treated Arabidopsis seedlings |
| Q79975069 | Transcript profiling of the anoxic rice coleoptile |
| Q35766605 | Transcriptional Analysis of Resistance to Low Temperatures in Bermudagrass Crown Tissues |
| Q55479757 | Transcriptional analysis of adipose tissue during development reveals depot-specific responsiveness to maternal dietary supplementation. |
| Q34925134 | Transcriptional events during the recovery from MRSA lung infection: a mouse pneumonia model |
| Q39688760 | Transcriptional profiling of breast cancer cells exposed to soy phytoestrogens after BRCA1 knockdown with a whole human genome microarray approach |
| Q33345718 | Transcriptional profiling of the pea shoot apical meristem reveals processes underlying its function and maintenance |
| Q28118826 | Transcriptional program of ciliated epithelial cells reveals new cilium and centrosome components and links to human disease |
| Q33599300 | Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury |
| Q53621297 | Transcriptional response of Saccharomyces cerevisiae to low temperature during wine fermentation |
| Q33860186 | Transcriptional responses indicate maintenance of photosynthetic proteins as key to the exceptional chilling tolerance of C4 photosynthesis in Miscanthus × giganteus |
| Q46829749 | Transcriptional responses of Plasmodium falciparum to alpha-difluoromethylornithine-induced polyamine depletion |
| Q89834980 | Transcriptome Analysis Identifies ALCAM Overexpression as a Prognosis Biomarker in Laryngeal Squamous Cell Carcinoma |
| Q34671768 | Transcriptome Analysis of Early Responsive Genes in Rice during Magnaporthe oryzae Infection |
| Q52676606 | Transcriptome Profiling of Neovascularized Corneas Reveals miR-204 as a Multi-target Biotherapy Deliverable by rAAVs |
| Q47621286 | Transcriptome and proteome analyses and the role of atypical calpain protein and autophagy in the spliced leader silencing pathway in Trypanosoma brucei |
| Q34850542 | Transcriptome of extracellular vesicles released by hepatocytes. |
| Q37317669 | Transcriptome-metabolome wide association study (TMWAS) of maneb and paraquat neurotoxicity reveals network level interactions in toxicologic mechanism |
| Q64100806 | Transcriptomic analysis of Spodoptera frugiperda Sf9 cells resistant to Bacillus thuringiensis Cry1Ca toxin reveals that extracellular Ca2+, Mg2+ and production of cAMP are involved in toxicity |
| Q34143005 | Two splicing factors carrying serine-arginine motifs, TSR1 and TSR1IP, regulate splicing, mRNA stability, and rRNA processing in Trypanosoma brucei. |
| Q27853065 | UDP glucuronosyltransferase 1A expression levels determine the response of colorectal cancer cells to the heat shock protein 90 inhibitor ganetespib |
| Q47128868 | Uncovering a Predictive Molecular Signature for the Onset of NASH-Related Fibrosis in a Translational NASH Mouse Model. |
| Q34705762 | Uncovering gene regulatory networks during mouse fetal germ cell development |
| Q40446923 | Unraveling the Light-Specific Metabolic and Regulatory Signatures of Rice through Combined in Silico Modeling and Multiomics Analysis. |
| Q38397480 | Use of archived biopsy specimens to study gene expression in oral mucosa from chemotherapy-treated cancer patients |
| Q33907606 | Using DNA microarrays to assay part function |
| Q36052371 | Using gene chips to identify organ-specific, smooth muscle responses to experimental diabetes: potential applications to urological diseases. |
| Q31142883 | Using generalized procrustes analysis (GPA) for normalization of cDNA microarray data |
| Q38708543 | Uterine responses to early pre-attachment embryos in the domestic dog and comparisons with other domestic animal species. |
| Q30990975 | VisRseq: R-based visual framework for analysis of sequencing data |
| Q34367448 | Whole-genome microarray analysis and functional characterization reveal distinct gene expression profiles and patterns in two mouse models of ileal inflammation. |
| Q37424383 | ZEB2 Represses the Epithelial Phenotype and Facilitates Metastasis in Ewing Sarcoma |
| Q33233003 | affylmGUI: a graphical user interface for linear modeling of single channel microarray data |
| Q29617988 | limma powers differential expression analyses for RNA-sequencing and microarray studies |
| Q28397782 | miR-1 Induces Growth Arrest and Apoptosis in Malignant Mesothelioma |
| Q89967088 | miR-20a-5p/TGFBR2 Axis Affects Pro-inflammatory Macrophages and Aggravates Liver Fibrosis |
| Q48182995 | miR-9a mediates the role of Lethal giant larvae as an epithelial growth inhibitor in Drosophila. |
| Q33997928 | p21 Promotes oncolytic adenoviral activity in ovarian cancer and is a potential biomarker |
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