Molecular cloning and characterization of SL3: a stem cell-specific SL RNA from the planarian Schmidtea mediterranea

scientific article published on 08 October 2013

Molecular cloning and characterization of SL3: a stem cell-specific SL RNA from the planarian Schmidtea mediterranea is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.GENE.2013.09.101
P932PMC publication ID3994195
P698PubMed publication ID24120894
P5875ResearchGate publication ID257753696

P50authorAlejandro Sánchez AlvaradoQ41868415
P2093author name stringAlessandro Rossi
Eric J Ross
Antonia Jack
P2860cites workSmed-SmB, a member of the LSm protein superfamily, is essential for chromatoid body organization and planarian stem cell proliferationQ83160892
To be or not to be a flatworm: the acoel controversyQ21143783
A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoniQ21144505
trans splicing of polycistronic Caenorhabditis elegans pre-mRNAs: analysis of the SL2 RNAQ24551644
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Basic local alignment search toolQ25938991
Specialized progenitors and regenerationQ26829049
Trans-splicingQ26864730
Structural basis for nematode eIF4E binding an m2,2,7G-Cap and its implications for translation initiationQ27674684
The C-terminal RG dipeptide repeats of the spliceosomal Sm proteins D1 and D3 contain symmetrical dimethylarginines, which form a major B-cell epitope for anti-Sm autoantibodiesQ28140527
Evolutionary origin of SL-addition trans-splicing: still an enigmaQ28206760
Asymmetric and symmetric stem-cell divisions in development and cancerQ28249478
Contribution of trans-splicing, 5' -leader length, cap-poly(A) synergism, and initiation factors to nematode translation in an Ascaris suum embryo cell-free systemQ28277994
Biogenesis of small nuclear RNPsQ28295174
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The Schmidtea mediterranea database as a molecular resource for studying platyhelminthes, stem cells and regenerationQ31117991
Convergent origins and rapid evolution of spliced leader trans-splicing in metazoa: insights from the ctenophora and hydrozoaQ33749941
The nematode eukaryotic translation initiation factor 4E/G complex works with a trans-spliced leader stem-loop to enable efficient translation of trimethylguanosine-capped RNAsQ33769223
A spliced leader is present on a subset of mRNAs from the human parasite Schistosoma mansoniQ33895647
Conversion of a trans-spliced C. elegans gene into a conventional gene by introduction of a splice donor site.Q34046996
Spliced leader trapping reveals widespread alternative splicing patterns in the highly dynamic transcriptome of Trypanosoma brucei.Q34047438
Not your father's planarian: a classic model enters the era of functional genomics.Q34125141
Multiplexed nanoflares: mRNA detection in live cellsQ34144523
Clonogenic neoblasts are pluripotent adult stem cells that underlie planarian regenerationQ34184695
The planarian Schmidtea mediterranea as a model for epigenetic germ cell specification: analysis of ESTs from the hermaphroditic strainQ34234893
trans and cis splicing in trypanosomatids: mechanism, factors, and regulationQ34269391
Trans-splicing and operonsQ34720214
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A complex containing CstF-64 and the SL2 snRNP connects mRNA 3' end formation and trans-splicing in C. elegans operons.Q35081547
PRMT5 and the role of symmetrical dimethylarginine in chromatoid bodies of planarian stem cells.Q35768070
Spliced leader RNA trans-splicing in metazoaQ35846136
Trans-spliced leader addition to mRNAs in a cnidarianQ35891762
Gene expression of pluripotency determinants is conserved between mammalian and planarian stem cells.Q36049563
Amputation induces stem cell mobilization to sites of injury during planarian regenerationQ36215732
SmedGD: the Schmidtea mediterranea genome databaseQ36454142
An RNAi screen reveals intestinal regulators of branching morphogenesis, differentiation, and stem cell proliferation in planariansQ36464769
Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders.Q36503763
Adult somatic stem cells in the human parasite Schistosoma mansoniQ36652300
RNA trans-splicing in flatworms. Analysis of trans-spliced mRNAs and genes in the human parasite, Schistosoma mansoniQ36693569
In vivo translation and stability of trans-spliced mRNAs in nematode embryosQ36833932
Evolutionary diversification of the Sm family of RNA-associated proteinsQ37238158
Functional characterization of five eIF4E isoforms in Caenorhabditis elegansQ38313802
Surprising diversity and distribution of spliced leader RNAs in flatwormsQ38344556
Spliced-leader RNA trans splicing in a chordate, Oikopleura dioica, with a compact genomeQ39757380
A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammalsQ41829171
Genetic regulators of a pluripotent adult stem cell system in planarians identified by RNAi and clonal analysisQ41896125
Molecular analysis of stem cells and their descendants during cell turnover and regeneration in the planarian Schmidtea mediterraneaQ41922401
Formaldehyde-based whole-mount in situ hybridization method for planariansQ41947311
Planarian regeneration involves distinct stem cell responses to wounds and tissue absenceQ42413468
Spliced-leader trans-splicing in freshwater planariansQ42660480
The flatworm spliced leader 3'-terminal AUG as a translation initiator methionineQ42670938
SL RNA genes of the ascidian tunicates Ciona intestinalis and Ciona savignyiQ43467562
Evidence for multiple independent origins of trans-splicing in MetazoaQ44690794
Structure and Expression of Novel Spliced Leader RNA Genes in Caenorhabditis elegansQ48070598
A trans-spliced leader sequence on actin mRNA in C. elegansQ48343028
Identification of a small RNA containing the trypanosome spliced leader: a donor of shared 5' sequences of trypanosomatid mRNAs?Q48387292
Transcripts coding for variant surface glycoproteins of Trypanosoma brucei have a short, identical exon at their 5' end.Q48401646
Characterization and categorization of fluorescence activated cell sorted planarian stem cells by ultrastructural analysis.Q50896747
Bromodeoxyuridine Specifically Labels the Regenerative Stem Cells of PlanariansQ58632945
New components of the spliced leader RNP required for nematode trans-splicingQ59006843
Isolation of planarian X-ray-sensitive stem cells by fluorescence-activated cell sortingQ61447956
Trypanosoma brucei encodes a bifunctional capping enzyme essential for cap 4 formation on the spliced leader RNAQ61524735
U small nuclear ribonucleoprotein requirements for nematode cis- and trans-splicing in vitroQ67904904
Regeneration and pattern formation in planarians. I. The pattern of mitosis in anterior and posterior regeneration in Dugesia (G) tigrina, and a new proposal for blastema formationQ70677689
The SL1 trans-spliced leader RNA performs an essential embryonic function in Caenorhabditis elegans that can also be supplied by SL2 RNAQ71150394
The ultrastructure of the outer epithelium of the planarian pharynxQ72606936
The ultrastructure of the insunk epithelium lining the planarian pharyngeal cavityQ72777793
X-ray sensitivity during the cell generation cycle of cultured Chinese hamster cellsQ72813361
Silencing of Sm proteins in Trypanosoma brucei by RNA interference captured a novel cytoplasmic intermediate in spliced leader RNA biogenesisQ79130141
P4510describes a project that usesImageJQ1659584
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectSchmidtea mediterraneaQ2158498
P1104number of pages12
P304page(s)156-167
P577publication date2013-10-08
P1433published inGeneQ5531065
P1476titleMolecular cloning and characterization of SL3: a stem cell-specific SL RNA from the planarian Schmidtea mediterranea
P478volume533

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cites work (P2860)
Q41021616Egf Signaling Directs Neoblast Repopulation by Regulating Asymmetric Cell Division in Planarians.
Q42008240Girardia dorotocephala transcriptome sequence, assembly, and validation through characterization of piwi homologs and stem cell progeny markers
Q38661056On the Possibility of an Early Evolutionary Origin for the Spliced Leader Trans-Splicing.
Q97526116SLFinder, a pipeline for the novel identification of splice-leader sequences: a good enough solution for a complex problem
Q41990372Single-cell analysis reveals functionally distinct classes within the planarian stem cell compartment
Q28602777SmedGD 2.0: The Schmidtea mediterranea genome database
Q30606317Synaptonemal complex extension from clustered telomeres mediates full-length chromosome pairing in Schmidtea mediterranea.

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