Genotype networks shed light on evolutionary constraints

scientific article published on 15 August 2011

Genotype networks shed light on evolutionary constraints is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P356DOI10.1016/J.TREE.2011.07.001
P698PubMed publication ID21840080
P5875ResearchGate publication ID51569985

P2093author name stringAndreas Wagner
P2860cites workAn expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)Q21194867
Intrinsically unstructured proteins and their functionsQ22061731
Prevalence of positive selection among nearly neutral amino acid replacements in DrosophilaQ22066343
Neutral evolution of mutational robustnessQ24655790
Convergent evolution of antifreeze glycoproteins in Antarctic notothenioid fish and Arctic codQ24685488
The crystal structure of bar-headed goose hemoglobin in deoxy form: the allosteric mechanism of a hemoglobin species with high oxygen affinityQ27635393
The evolutionary fate and consequences of duplicate genesQ27861065
Plasticity, evolvability, and modularity in RNAQ28143252
Dynamical patterning modules: a "pattern language" for development and evolution of multicellular formQ28241835
Mutations affecting segment number and polarity in DrosophilaQ28273492
A general model for the origin of allometric scaling laws in biologyQ28306671
Congruent evolution of genetic and environmental robustness in micro-RNAQ28307645
Robustness can evolve gradually in complex regulatory gene networks with varying topologyQ28469133
Evolutionary plasticity and innovations in complex metabolic reaction networksQ28472194
Evolutionary innovations and the organization of protein functions in genotype spaceQ28744539
The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogasterQ29013449
Evolution in action: following function in duplicated floral homeotic genesQ48124816
Rapid evolution of cis-regulatory sequences via local point mutations.Q48347837
The cyclops mutation blocks specification of the floor plate of the zebrafish central nervous system.Q48766492
Enhancement of PCB degradation by Burkholderia xenovorans LB400 in biphasic systems by manipulating culture conditions.Q50932662
Traveling wave formation in vertebrate segmentation.Q51853752
Effects of molecular memory and bursting on fluctuations in gene expression.Q51896600
New structural variation in evolutionary searches of RNA neutral networks.Q51923609
In silico predicted robustness of viroids RNA secondary structures. I. The effect of single mutations.Q51942263
Dynamic control of positional information in the early Drosophila embryo.Q51994119
Model for cooperative control of positional information in Drosophila by bicoid and maternal hunchback.Q52211311
Quantitative genetics and developmental constraints on evolution by selection.Q52272619
Exploring phenotype space through neutral evolution.Q52298835
From sequences to shapes and back: a case study in RNA secondary structures.Q52379672
Pentachlorophenol measurements in body fluids of people in log homes and workplaces.Q52455279
The mechanical basis of morphogenesis. I. Epithelial folding and invagination.Q52532028
The evolutionary potential of the Drosophila sex determination gene network.Q52641540
Viral RNA and evolved mutational robustnessQ56991964
Developmental Constraints and Evolution: A Perspective from the Mountain Lake Conference on Development and EvolutionQ61795275
Evolution of the diverse antifreeze proteinsQ63814577
Modelling neutral and selective evolution of protein foldingQ68323896
Continuity in evolution: on the nature of transitionsQ74594348
Shaping space: the possible and the attainable in RNA genotype-phenotype mappingQ77471692
Characterization of stem cells and cancer cells on the basis of gene expression profile stability, plasticity, and robustness: dynamical systems theory of gene expressions under cell-cell interaction explains mutational robustness of differentiatedQ84021773
Control of stochasticity in eukaryotic gene expressionQ29615955
Reconstruction of biochemical networks in microorganismsQ29616018
Functional roles for noise in genetic circuitsQ29616625
Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolutionQ29616847
Noise in eukaryotic gene expressionQ29617406
The evolution of transcriptional regulation in eukaryotesQ29618447
The segment polarity network is a robust developmental moduleQ29618600
The structural basis of molecular adaptationQ30430193
The early evolution of eukaryotes: a geological perspectiveQ31163026
Evo-devo and constraints on selectionQ33244162
Homologies in leaf form inferred from KNOXI gene expression during developmentQ33337289
Predicting phenotypic diversity and the underlying quantitative molecular transitionsQ33428992
Genotype networks in metabolic reaction spacesQ33543376
Genotype networks, innovation, and robustness in sulfur metabolismQ33840085
Evolution of a metabolic pathway for degradation of a toxic xenobiotic: the patchwork approachQ33904333
Circuit topology and the evolution of robustness in two-gene circadian oscillatorsQ33913632
Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolutionQ34097870
Natural Selection and the Concept of a Protein SpaceQ34233063
Hox cluster duplications and the opportunity for evolutionary noveltiesQ34382145
Evolutionary aspects of urea cycle enzyme genesQ34503849
Noise in protein expression scales with natural protein abundanceQ34528937
Genomic evolution of Hox gene clustersQ34569836
Direct evolution of genetic robustness in microRNA.Q34597873
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coliQ34785166
Hox genes and the evolution of the arthropod body planQ35030473
The evolution of floral homeotic gene functionQ35158098
The segmentation clock: converting embryonic time into spatial patternQ35180352
Innovation and robustness in complex regulatory gene networksQ35962922
Developmental constraints vs. variational properties: How pattern formation can help to understand evolution and development.Q36299517
Nature of the protein universeQ37233714
Shaping segments: Hox gene function in the genomic age.Q37271912
Evidence for an episodic model of protein sequence evolutionQ37554580
Inheritance of a secondary sexual character in Drosophila silvestrisQ37576472
Punctuated evolution caused by selection of rare beneficial mutations.Q38563665
Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwaterQ39562811
Evolution of novel metabolic pathways for the degradation of chloroaromatic compoundsQ41362380
Positive selection of tyrosine loss in metazoan evolution.Q42705317
Segmenting the fly embryo: logical analysis of the role of the segment polarity cross-regulatory moduleQ46780514
P433issue11
P1104number of pages8
P304page(s)577-584
P577publication date2011-08-15
P1433published inTrends in Ecology & EvolutionQ15265725
P1476titleGenotype networks shed light on evolutionary constraints
P478volume26

Reverse relations

cites work (P2860)
Q30375798A Philosophical Perspective on Evolutionary Systems Biology
Q57027551Chaperones, Canalization, and Evolution of Animal Forms
Q28681517Clades reach highest morphological disparity early in their evolution
Q24600021Compensatory evolution and the origins of innovations
Q46323402Constraint and Contingency Pervade the Emergence of Novel Phenotypes in Complex Metabolic Systems
Q48254729DNA: Celebrate the unknowns
Q30401203Distribution of genotype network sizes in sequence-to-structure genotype-phenotype maps
Q34214085Evolutionary stasis in Euphorbiaceae pollen: selection and constraints
Q35739172Evolutionary stasis in pollen morphogenesis due to natural selection
Q33611013Gene co-expression network connectivity is an important determinant of selective constraint
Q38199077Genomics, evolution and development of amphioxus and tunicates: The Goldilocks principle
Q92342787Genotype network intersections promote evolutionary innovation
Q28708799Non-local competition drives both rapid divergence and prolonged stasis in a model of speciation in populations with degenerate resource consumption
Q31119186Parallel or convergent evolution in human population genomic data revealed by genotype networks
Q47144203Regulatory network structure determines patterns of intermolecular epistasis.
Q52753145Sexual selection and the evolution of secondary sexual traits: sex comb evolution in Drosophila.
Q35746917Strain Variation in the Transcriptome of the Dengue Fever Vector, Aedes aegypti
Q50909695Surviving evolutionary escape on complex genotype-phenotype networks.
Q51527691Switching between apparently redundant iron-uptake mechanisms benefits bacteria in changeable environments.
Q58756781Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution
Q28608333The Relationship between Gene Network Structure and Expression Variation among Individuals and Species
Q40410875The Underlying Ecological Processes of Gut Microbiota Among Cohabitating Retarded, Overgrown and Normal Shrimp.
Q91874899The long-term restoration of ecosystem complexity
Q27011463The role of robustness in phenotypic adaptation and innovation
Q30882469Using genomics to characterize evolutionary potential for conservation of wild populations
Q42023667toyLIFE: a computational framework to study the multi-level organisation of the genotype-phenotype map.

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