| scholarly article | Q13442814 |
| P2093 | author name string | Vishwanath R Iyer | |
| Sushma Shivaswamy | |||
| P2860 | cites work | Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning | Q21146082 |
| Chromatin dynamics at DNA replication, transcription and repair | Q22065678 | ||
| Translating the Histone Code | Q22065840 | ||
| Transcriptional activation domains of human heat shock factor 1 recruit human SWI/SNF | Q24550872 | ||
| Cluster analysis and display of genome-wide expression patterns | Q24644463 | ||
| Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization | Q24657378 | ||
| Global nucleosome occupancy in yeast | Q24801575 | ||
| Single-nucleosome mapping of histone modifications in S. cerevisiae | Q24816848 | ||
| Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis | Q27860815 | ||
| Genomic expression programs in the response of yeast cells to environmental changes | Q27860823 | ||
| The language of covalent histone modifications | Q27860931 | ||
| Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss | Q37458741 | ||
| The Swi/Snf chromatin remodeling complex is required for ribosomal DNA and telomeric silencing in Saccharomyces cerevisiae | Q37493611 | ||
| Global role of TATA box-binding protein recruitment to promoters in mediating gene expression profiles | Q37493618 | ||
| Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase | Q38304511 | ||
| Collaborative competition mechanism for gene activation in vivo | Q39740430 | ||
| Chromatin remodelling at the PHO8 promoter requires SWI-SNF and SAGA at a step subsequent to activator binding | Q41979426 | ||
| Mapping global histone acetylation patterns to gene expression | Q44928696 | ||
| Distinct stimulus-specific histone modifications at hsp70 chromatin targeted by the transcription factor heat shock factor-1. | Q45029170 | ||
| Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit. | Q51593177 | ||
| Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. | Q51599592 | ||
| Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes. | Q52542735 | ||
| Evidence for nucleosome depletion at active regulatory regions genome-wide | Q54998820 | ||
| Activation domain-mediated targeting of the SWI/SNF complex to promoters stimulates transcription from nucleosome arrays | Q73151282 | ||
| The heat shock response in yeast: differential regulations and contributions of the Msn2p/Msn4p and Hsf1p regulons | Q78016763 | ||
| Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae | Q27861085 | ||
| Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin | Q27935829 | ||
| Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1. | Q27938728 | ||
| The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor | Q27938755 | ||
| Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins | Q27940360 | ||
| The economics of ribosome biosynthesis in yeast | Q28131645 | ||
| Recent advances in understanding chromatin remodeling by Swi/Snf complexes | Q28188333 | ||
| PCR-synthesis of marker cassettes with long flanking homology regions for gene disruptions in S. cerevisiae | Q28295796 | ||
| Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF | Q29547783 | ||
| Histone H4-K16 acetylation controls chromatin structure and protein interactions | Q29614521 | ||
| Genome-wide map of nucleosome acetylation and methylation in yeast | Q29614525 | ||
| Cooperation between complexes that regulate chromatin structure and transcription | Q29614769 | ||
| Heat shock factor function and regulation in response to cellular stress, growth, and differentiation signals | Q33706895 | ||
| Genomic characterization reveals a simple histone H4 acetylation code. | Q33935027 | ||
| Histone acetylation at promoters is differentially affected by specific activators and repressors | Q33967903 | ||
| Chromatin architecture | Q33994172 | ||
| A critical role for heat shock transcription factor in establishing a nucleosome-free region over the TATA-initiation site of the yeast HSP82 heat shock gene. | Q34061479 | ||
| Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density | Q34097281 | ||
| The bromodomain: a regulator of ATP-dependent chromatin remodeling? | Q34327336 | ||
| Genome-wide analysis of the biology of stress responses through heat shock transcription factor | Q34347448 | ||
| The transcription factor Ifh1 is a key regulator of yeast ribosomal protein genes. | Q34379346 | ||
| Genome-scale identification of nucleosome positions in S. cerevisiae | Q34427114 | ||
| Heat shock transcription factor (Hsf)-4b recruits Brg1 during the G1 phase of the cell cycle and regulates the expression of heat shock proteins | Q34504070 | ||
| Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4. | Q34709355 | ||
| Fine-structure analysis of ribosomal protein gene transcription | Q34718243 | ||
| Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae | Q35110235 | ||
| Displacement of histones at promoters of Saccharomyces cerevisiae heat shock genes is differentially associated with histone H3 acetylation | Q35131734 | ||
| Recruitment of the SWI/SNF chromatin remodeling complex by transcriptional activators | Q35206109 | ||
| ISWI complexes in Saccharomyces cerevisiae | Q35690842 | ||
| Evidence that Swi/Snf directly represses transcription in S. cerevisiae | Q35787155 | ||
| Localized recruitment of a chromatin-remodeling activity by an activator in vivo drives transcriptional elongation | Q35965483 | ||
| A model for particulate structure in chromatin | Q36210467 | ||
| Heat shock factor gains access to the yeast HSC82 promoter independently of other sequence-specific factors and antagonizes nucleosomal repression of basal and induced transcription | Q36564336 | ||
| Altering nucleosomes during DNA double-strand break repair in yeast. | Q36602157 | ||
| Molecular analysis of SNF2 and SNF5, genes required for expression of glucose-repressible genes in Saccharomyces cerevisiae | Q36898498 | ||
| P433 | issue | 7 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 2221-2234 | |
| P577 | publication date | 2008-01-22 | |
| P1433 | published in | Molecular and Cellular Biology | Q3319478 |
| P1476 | title | Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response | |
| P478 | volume | 28 |
| Q89738645 | A genetic analysis reveals novel histone residues required for transcriptional reprogramming upon stress |
| Q37538792 | A non-homogeneous hidden-state model on first order differences for automatic detection of nucleosome positions |
| Q34104251 | A structural perspective on the where, how, why, and what of nucleosome positioning |
| Q89571850 | Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags |
| Q42234948 | Chd1 co-localizes with early transcription elongation factors independently of H3K36 methylation and releases stalled RNA polymerase II at introns |
| Q35748234 | Chromatin and transcription in yeast |
| Q31078221 | Chromatin proteins: key responders to stress |
| Q90707564 | Chromatin regulation and dynamics in stem cells |
| Q42144733 | Chromatin remodelers act globally, sequence positions nucleosomes locally |
| Q35041630 | Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters |
| Q36091859 | Chromatin remodeling by the SWI/SNF complex is essential for transcription mediated by the yeast cell wall integrity MAPK pathway |
| Q51116884 | Composition and Function of Mutant Swi/Snf Complexes. |
| Q52324959 | Condition-Specific Modeling of Biophysical Parameters Advances Inference of Regulatory Networks. |
| Q27934029 | Cooperation between the INO80 complex and histone chaperones determines adaptation of stress gene transcription in the yeast Saccharomyces cerevisiae |
| Q92410530 | Depending on the stress, histone deacetylase inhibitors act as heat shock protein co-inducers in motor neurons and potentiate arimoclomol, exerting neuroprotection through multiple mechanisms in ALS models |
| Q37384798 | Discovery of protein-DNA interactions by penalized multivariate regression |
| Q60922126 | Dynamics of Chromatin and Transcription during Transient Depletion of the RSC Chromatin Remodeling Complex |
| Q37335359 | Dynamics of the Saccharomyces cerevisiae transcriptome during bread dough fermentation. |
| Q64085920 | Epigenetic memory in gene regulation and immune response |
| Q36920053 | Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast |
| Q33719389 | Functional interplay between chromatin remodeling complexes RSC, SWI/SNF and ISWI in regulation of yeast heat shock genes |
| Q36185076 | Functional role of histone variant Htz1 in the stress response to oleate in Saccharomyces cerevisiae |
| Q57454031 | Genetic and epigenetic determinants establish a continuum of Hsf1 occupancy and activity across the yeast genome |
| Q36506754 | Genome-wide cooperation by HAT Gcn5, remodeler SWI/SNF, and chaperone Ydj1 in promoter nucleosome eviction and transcriptional activation |
| Q35765017 | Genomic profiling of fungal cell wall-interfering compounds: identification of a common gene signature. |
| Q35569664 | Heat shock reduces stalled RNA polymerase II and nucleosome turnover genome-wide |
| Q54963198 | Heritable stress response dynamics revealed by single-cell genealogy. |
| Q33384868 | Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq |
| Q27974497 | Localization and interactions of Plasmodium falciparum SWIB/MDM2 homologues |
| Q92461136 | Mitochondrial protein-induced stress triggers a global adaptive transcriptional programme |
| Q42325133 | Molecular mechanisms that distinguish TFIID housekeeping from regulatable SAGA promoters. |
| Q33997209 | Multiple distinct stimuli increase measured nucleosome occupancy around human promoters |
| Q30839616 | Novel Gene Discovery in the Human Malaria Parasite using Nucleosome Positioning Data |
| Q37800070 | Novel aspects of heat shock factors: DNA recognition, chromatin modulation and gene expression |
| Q34531199 | Nucleoid-associated proteins affect mutation dynamics in E. coli in a growth phase-specific manner |
| Q36205774 | Nucleosome alterations caused by mutations at modifiable histone residues in Saccharomyces cerevisiae |
| Q42253055 | Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation |
| Q36715610 | Nucleosome repositioning underlies dynamic gene expression. |
| Q92432989 | Opposing chromatin remodelers control transcription initiation frequency and start site selection |
| Q37998803 | Overcoming the nucleosome barrier during transcript elongation |
| Q95849030 | Plant-pathogen interactions: MicroRNA-mediated trans-kingdom gene regulation in fungi and their host plants |
| Q37405738 | Population genomic analysis uncovers environmental stress-driven selection and adaptation of Lentinula edodes population in China. |
| Q28571475 | Protein kinase A regulates molecular chaperone transcription and protein aggregation |
| Q64103012 | RNA Sequencing Reveals Specific TranscriptomicSignatures Distinguishing Effects of the [⁺] Prion and Deletion in Yeast |
| Q35728265 | RNA polymerase II carboxyl-terminal domain phosphorylation regulates protein stability of the Set2 methyltransferase and histone H3 di- and trimethylation at lysine 36 |
| Q39804784 | Regulation of chaperone binding and nucleosome dynamics by key residues within the globular domain of histone H3. |
| Q21144996 | Regulon-specific control of transcription elongation across the yeast genome |
| Q38048770 | Response to hyperosmotic stress |
| Q60017544 | Roles of heat shock factor 1 beyond the heat shock response |
| Q37432193 | SAGA and Rpd3 chromatin modification complexes dynamically regulate heat shock gene structure and expression |
| Q42579967 | SWI/SNF and Asf1p cooperate to displace histones during induction of the saccharomyces cerevisiae HO promoter |
| Q65002016 | SWI/SNF and RSC cooperate to reposition and evict promoter nucleosomes at highly expressed genes in yeast. |
| Q41999510 | Sequential recruitment of SAGA and TFIID in a genomic response to DNA damage in Saccharomyces cerevisiae |
| Q35047254 | Signal Transduction Pathways Leading to Heat Shock Transcription |
| Q34360808 | Swi/Snf dynamics on stress-responsive genes is governed by competitive bromodomain interactions |
| Q27865236 | System-wide changes to SUMO modifications in response to heat shock |
| Q35788944 | Targeted INO80 enhances subnuclear chromatin movement and ectopic homologous recombination |
| Q28550375 | The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways |
| Q27937091 | The SWI/SNF chromatin remodeling complex influences transcription by RNA polymerase I in Saccharomyces cerevisiae |
| Q42051038 | The SWI/SNF complex acts to constrain distribution of the centromeric histone variant Cse4. |
| Q35910444 | The Transition of Poised RNA Polymerase II to an Actively Elongating State Is a "Complex" Affair |
| Q47171824 | The chromatin remodeling factor ISW-1 integrates organismal responses against nuclear and mitochondrial stress |
| Q37643958 | The conserved PBAF nucleosome-remodeling complex mediates the response to stress in Caenorhabditis elegans |
| Q38084751 | The heat shock response: A case study of chromatin dynamics in gene regulation. |
| Q35863026 | The response to heat shock and oxidative stress in Saccharomyces cerevisiae |
| Q42680589 | The role of PKA in the translational response to heat stress in Saccharomyces cerevisiae |
| Q39042789 | Transcription factors that influence RNA polymerases I and II: To what extent is mechanism of action conserved? |
| Q50147151 | Transcriptional Regulation of the Ambient Temperature Response by H2A.Z Nucleosomes and HSF1 Transcription Factors in Arabidopsis. |
| Q35097810 | Transcriptional regulation in yeast during diauxic shift and stationary phase |
| Q33984507 | Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription |
| Q36103874 | Understanding the Mechanism of Thermotolerance Distinct From Heat Shock Response Through Proteomic Analysis of Industrial Strains of Saccharomyces cerevisiae |
| Q89683293 | Using RNA Interference to Reveal the Function of Chromatin Remodeling Factor ISWI in Temperature Tolerance in Bemisia tabaci Middle East-Asia Minor 1 Cryptic Species |
| Q51419679 | Widespread and precise reprogramming of yeast protein-genome interactions in response to heat shock. |
| Q35071005 | Widespread misinterpretable ChIP-seq bias in yeast |
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