| review article | Q7318358 |
| scholarly article | Q13442814 |
| P2093 | author name string | Sergei A Grigoryev | |
| Arijit Maitra | |||
| Gaurav Arya | |||
| P2860 | cites work | Chromatin conformation in living cells: support for a zig-zag model of the 30 nm chromatin fiber | Q46082252 |
| Sequence structure of hidden 10.4-base repeat in the nucleosomes of C. elegans | Q46087846 | ||
| ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor | Q46700727 | ||
| Nucleosome positioning as a determinant of exon recognition | Q46849980 | ||
| Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber | Q47984099 | ||
| Electrostatic mechanism of nucleosome spacing. | Q52536802 | ||
| Chromatin organization marks exon-intron structure | Q57058000 | ||
| An all-atom model of the chromatin fiber containing linker histones reveals a versatile structure tuned by the nucleosomal repeat length | Q21092239 | ||
| The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome | Q21092478 | ||
| Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation | Q21563549 | ||
| Crystal structure of the nucleosome core particle at 2.8 A resolution | Q22122355 | ||
| CTCF: master weaver of the genome | Q24621388 | ||
| Linker histone H1 is essential for Drosophila development, the establishment of pericentric heterochromatin, and a normal polytene chromosome structure | Q24647656 | ||
| A genomic code for nucleosome positioning | Q24650238 | ||
| Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin | Q24652372 | ||
| Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains | Q24655087 | ||
| Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin | Q24681606 | ||
| Global nucleosome occupancy in yeast | Q24801575 | ||
| A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin | Q24801790 | ||
| Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tail | Q27638012 | ||
| Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution | Q27639217 | ||
| Histone H2A.Z regulats transcription and is partially redundant with nucleosome remodeling complexes | Q27933818 | ||
| Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association | Q27933908 | ||
| Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome | Q27934482 | ||
| The effect of internucleosomal interaction on folding of the chromatin fiber | Q42943386 | ||
| A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments | Q43115780 | ||
| Epigenetic nucleosomes: Alu sequences and CG as nucleosome positioning element | Q43971420 | ||
| Nucleosome mobility and the maintenance of nucleosome positioning | Q44523674 | ||
| Precise nucleosome positioning and the TATA box dictate requirements for the histone H4 tail and the bromodomain factor Bdf1. | Q44957855 | ||
| Suppression of homologous recombination by the Saccharomyces cerevisiae linker histone | Q27940005 | ||
| Specific distribution of the Saccharomyces cerevisiae linker histone homolog HHO1p in the chromatin | Q27940216 | ||
| Genome-wide location and function of DNA binding proteins | Q28131765 | ||
| Dynamic binding of histone H1 to chromatin in living cells | Q28141055 | ||
| FACT facilitates transcription-dependent nucleosome alteration | Q28203107 | ||
| Histone modifications at human enhancers reflect global cell-type-specific gene expression | Q28238467 | ||
| Structural determinants for generating centromeric chromatin | Q28274742 | ||
| Genome-wide mapping of in vivo protein-DNA interactions | Q29547162 | ||
| How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers | Q29547350 | ||
| Histone H4-K16 acetylation controls chromatin structure and protein interactions | Q29614521 | ||
| Cooperation between complexes that regulate chromatin structure and transcription | Q29614769 | ||
| Dynamic regulation of nucleosome positioning in the human genome | Q29615046 | ||
| Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex | Q29617854 | ||
| Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing | Q29618021 | ||
| Genomic sequence is highly predictive of local nucleosome depletion | Q33316813 | ||
| Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo | Q33659597 | ||
| Modulation of ISWI function by site-specific histone acetylation | Q33757651 | ||
| Controlling the double helix | Q34172152 | ||
| Computer simulation of the 30-nanometer chromatin fiber. | Q34177968 | ||
| Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length. | Q34196678 | ||
| Structure of chromatin and the linking number of DNA. | Q34273632 | ||
| Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy | Q34362137 | ||
| Nucleosome arrays reveal the two-start organization of the chromatin fiber | Q34371762 | ||
| Genome-scale identification of nucleosome positions in S. cerevisiae | Q34427114 | ||
| X-ray structure of a tetranucleosome and its implications for the chromatin fibre | Q34431881 | ||
| Informative priors based on transcription factor structural class improve de novo motif discovery | Q34551824 | ||
| Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling | Q34571819 | ||
| Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. | Q34613479 | ||
| Flexible histone tails in a new mesoscopic oligonucleosome model | Q34680344 | ||
| A high-resolution atlas of nucleosome occupancy in yeast | Q34688532 | ||
| What positions nucleosomes?--A model | Q34747190 | ||
| Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure | Q34789571 | ||
| 30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction | Q34800325 | ||
| The DNA-encoded nucleosome organization of a eukaryotic genome | Q34907179 | ||
| Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions | Q34995401 | ||
| The logic of chromatin architecture and remodelling at promoters | Q35001999 | ||
| Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model | Q35133750 | ||
| Chromatin remodeling by ATP-dependent molecular machines. | Q35591861 | ||
| Keeping fingers crossed: heterochromatin spreading through interdigitation of nucleosome arrays | Q35749599 | ||
| Nucleosome stability mediated by histone variants H3.3 and H2A.Z. | Q35840889 | ||
| Nucleosome positioning signals in genomic DNA | Q35914766 | ||
| Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy | Q35926293 | ||
| The diameters of frozen-hydrated chromatin fibers increase with DNA linker length: evidence in support of variable diameter models for chromatin | Q36223819 | ||
| The three-dimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon | Q36234105 | ||
| Structure of the '30 nm' chromatin fibre: a key role for the linker histone | Q36484066 | ||
| A chromatin folding model that incorporates linker variability generates fibers resembling the native structures | Q36567800 | ||
| Twist constraints on linker DNA in the 30-nm chromatin fiber: implications for nucleosome phasing | Q36588850 | ||
| Mechanisms of ATP dependent chromatin remodeling | Q36738573 | ||
| Higher-order structures of chromatin: the elusive 30 nm fiber | Q36744470 | ||
| Spontaneous access to DNA target sites in folded chromatin fibers | Q36787090 | ||
| A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells | Q36820711 | ||
| Nucleosome positioning and gene regulation: advances through genomics | Q36883122 | ||
| Chromatin remodeling: insights and intrigue from single-molecule studies | Q36994145 | ||
| A variable topology for the 30-nm chromatin fibre | Q37024479 | ||
| Distinctive sequence patterns in metazoan and yeast nucleosomes: implications for linker histone binding to AT-rich and methylated DNA. | Q37199513 | ||
| Large-scale chromatin structure of inducible genes: transcription on a condensed, linear template. | Q37237876 | ||
| Nucleosome organization in the Drosophila genome. | Q37326387 | ||
| Acetylation of histone H3 at the nucleosome dyad alters DNA-histone binding. | Q37358082 | ||
| Hydrodynamic studies on defined heterochromatin fragments support a 30-nm fiber having six nucleosomes per turn | Q37413887 | ||
| The folding and unfolding of eukaryotic chromatin. | Q37433198 | ||
| Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast | Q37539289 | ||
| What controls nucleosome positions? | Q37549548 | ||
| Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response | Q38294335 | ||
| Statistical positioning of nucleosomes by specific protein-binding to an upstream activating sequence in yeast | Q38346135 | ||
| Molecular mechanisms of transcriptional regulation in yeast | Q38686665 | ||
| Acf1 confers unique activities to ACF/CHRAC and promotes the formation rather than disruption of chromatin in vivo | Q40483257 | ||
| The nucleosome repeat length increases during erythropoiesis in the chick | Q40573051 | ||
| Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences | Q41131282 | ||
| A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome | Q41336121 | ||
| Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation | Q41832209 | ||
| Bypassing the requirements for epigenetic modifications in gene transcription by increasing enhancer strength | Q41911037 | ||
| Chromatin remodelers act globally, sequence positions nucleosomes locally | Q42144733 | ||
| Transcription. Gene expression--where to start? | Q42396501 | ||
| Biased chromatin signatures around polyadenylation sites and exons | Q42689954 | ||
| Antagonistic forces that position nucleosomes in vivo. | Q42690299 | ||
| P433 | issue | 6 | |
| P304 | page(s) | 803-820 | |
| P577 | publication date | 2010-06-01 | |
| P1433 | published in | Journal of Biomolecular Structure and Dynamics | Q15754747 |
| P1476 | title | A structural perspective on the where, how, why, and what of nucleosome positioning | |
| P478 | volume | 27 |
| Q51252643 | An analysis and prediction of nucleosome positioning based on information content. |
| Q36280616 | Cooperative cluster formation, DNA bending and base-flipping by O6-alkylguanine-DNA alkyltransferase |
| Q38030003 | DNA structural properties in the classification of genomic transcription regulation elements |
| Q41842016 | Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae |
| Q28484127 | Dissecting epigenetic silencing complexity in the mouse lung cancer suppressor gene Cadm1 |
| Q41786912 | Dynamics of forced nucleosome unraveling and role of nonuniform histone-DNA interactions |
| Q39094607 | Fuzziness and noise in nucleosomal architecture |
| Q42369727 | Heterochromatin assembly by interrupted Sir3 bridges across neighboring nucleosomes. |
| Q33954253 | Insight into the cooperative DNA binding of the O⁶-alkylguanine DNA alkyltransferase. |
| Q27309192 | Mechanisms underlying epigenetic and transcriptional heterogeneity in Chinese hamster ovary (CHO) cell lines |
| Q39740522 | Mesoscale Modeling Reveals Hierarchical Looping of Chromatin Fibers Near Gene Regulatory Elements. |
| Q37997087 | Modeling the dynamic epigenome: from histone modifications towards self-organizing chromatin |
| Q35073472 | Nucleosome distribution and linker DNA: connecting nuclear function to dynamic chromatin structure |
| Q44144466 | Nucleosome positioning pattern derived from oligonucleotide compositions of genomic sequences |
| Q35198007 | OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes |
| Q34043829 | Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast |
| Q51433909 | Predicting nucleosome positions in yeast: using the absolute frequency. |
| Q36240758 | Promoters recognized by forkhead proteins exist for individual 21U-RNAs |
| Q46058028 | Recognition rules for binding of homeodomains to operator DNA. |
| Q30979730 | Saturation analysis of ChIP-seq data for reproducible identification of binding peaks |
| Q39267349 | Torsional behavior of chromatin is modulated by rotational phasing of nucleosomes |
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