| scholarly article | Q13442814 |
| P356 | DOI | 10.1006/JMBI.1996.0503 |
| P8608 | Fatcat ID | release_ammomogturcl5nmh425f6nxviy |
| P698 | PubMed publication ID | 8831784 |
| P5875 | ResearchGate publication ID | 14373164 |
| P2093 | author name string | Trifonov EN | |
| Borodovsky M | |||
| Ioshikhes I | |||
| Bolshoy A | |||
| Derenshteyn K | |||
| P433 | issue | 2 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | sequence alignment | Q827246 |
| P304 | page(s) | 129-139 | |
| P577 | publication date | 1996-09-01 | |
| P13046 | publication type of scholarly work | review article | Q7318358 |
| P1433 | published in | Journal of Molecular Biology | Q925779 |
| P1476 | title | Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences | |
| P478 | volume | 262 |
| Q43252160 | "Genome design" model: evidence from conserved intronic sequence in human-mouse comparison |
| Q37336683 | A 1,2-d(GpG) cisplatin intrastrand cross-link influences the rotational and translational setting of DNA in nucleosomes |
| Q24537244 | A Topological Approach to Nucleosome Structure and Dynamics: The Linking Number Paradox and Other Issues |
| Q41336121 | A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome |
| Q24650871 | A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning |
| Q40352676 | A species-specific nucleosomal signature defines a periodic distribution of amino acids in proteins. |
| Q34104251 | A structural perspective on the where, how, why, and what of nucleosome positioning |
| Q38550021 | A theoretical perusal of the satellite DNA curvature in tenebrionid beetles. |
| Q42089381 | A translational signature for nucleosome positioning in vivo. |
| Q35215879 | Apoptotic lymphocytes of H. sapiens lose nucleosomes in GC-rich promoters |
| Q36678205 | Characteristics of nucleosome core DNA and their applications in predicting nucleosome positions |
| Q36819060 | Cisplatin damage overrides the predefined rotational setting of positioned nucleosomes |
| Q37222781 | Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes |
| Q33356804 | Conflicting selection pressures on synonymous codon use in yeast suggest selection on mRNA secondary structures |
| Q41841153 | DNA bending induced by carbocyclic sugar analogs constrained to the north conformation |
| Q41363017 | DNA methylation regulated nucleosome dynamics |
| Q36740102 | DNA physical properties determine nucleosome occupancy from yeast to fly. |
| Q33669258 | DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum |
| Q34269649 | Differences in DNA curvature-related sequence periodicity between prokaryotic chromosomes and phages, and relationship to chromosomal prophage content |
| Q30978995 | Dinucleosome DNA of human K562 cells: experimental and computational characterizations. |
| Q34721066 | Dynamic nucleosome organization at hox promoters during zebrafish embryogenesis. |
| Q33579516 | Effects of Alu elements on global nucleosome positioning in the human genome |
| Q34633240 | Enhancement of the nucleosomal pattern in sequences of lower complexity |
| Q43971420 | Epigenetic nucleosomes: Alu sequences and CG as nucleosome positioning element |
| Q36089885 | Evidence of selection for an accessible nucleosomal array in human |
| Q35173699 | Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin |
| Q33520380 | G+C content dominates intrinsic nucleosome occupancy |
| Q41169537 | Genome-Wide Mapping of Nucleosomes in Yeast |
| Q33316813 | Genomic sequence is highly predictive of local nucleosome depletion |
| Q37771716 | Genomic studies and computational predictions of nucleosome positions and formation energies. |
| Q39528577 | Hpr1 is preferentially required for transcription of either long or G+C-rich DNA sequences in Saccharomyces cerevisiae. |
| Q33917388 | Human nucleosomes: special role of CG dinucleotides and Alu-nucleosomes |
| Q27486568 | Immunity related genes in dipterans share common enrichment of AT-rich motifs in their 5' regulatory regions that are potentially involved in nucleosome formation |
| Q24810679 | Improved alignment of nucleosome DNA sequences using a mixture model |
| Q47981552 | Influence of the sequence on elastic properties of long DNA chains. |
| Q41700004 | Junk DNA and sectorial gene repression |
| Q50062969 | LeNup: Learning Nucleosome positioning from DNA sequences with improved convolutional neural networks. |
| Q33349451 | Learning a weighted sequence model of the nucleosome core and linker yields more accurate predictions in Saccharomyces cerevisiae and Homo sapiens |
| Q57555479 | Localization of curved DNA and its association with nucleosome phasing in the promoter region of the human estrogen receptor α gene |
| Q64118412 | MULTiPly: a novel multi-layer predictor for discovering general and specific types of promoters |
| Q74350927 | Mammalian Retroposons Integrate at Kinkable DNA Sites |
| Q43121044 | Modeling interactions between adjacent nucleosomes improves genome-wide predictions of nucleosome occupancy |
| Q52012207 | Mutually symmetric and complementary triplets: differences in their use distinguish systematically between coding and non-coding genomic sequences |
| Q34977512 | Nanopores suggest a negligible influence of CpG methylation on nucleosome packaging and stability |
| Q74352513 | New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning |
| Q79151096 | New evidence that DNA encodes its packaging |
| Q39170272 | Nonspecific Transcription-Factor-DNA Binding Influences Nucleosome Occupancy in Yeast |
| Q41634652 | Nucleosomal signatures impose nucleosome positioning in coding and noncoding sequences in the genome. |
| Q82423487 | Nucleosome Positioning Patterns Derived from Human Apoptotic Nucleosomes |
| Q37326387 | Nucleosome organization in the Drosophila genome. |
| Q35990971 | Nucleosome packaging and nucleosome positioning of genomic DNA |
| Q33564119 | Nucleosome positioning by genomic excluding-energy barriers |
| Q46739986 | Nucleosome positioning by sequence, state of the art and apparent finale |
| Q31160816 | Nucleosome positioning from tiling microarray data |
| Q37885611 | Nucleosome positioning in Saccharomyces cerevisiae. |
| Q35914766 | Nucleosome positioning signals in genomic DNA |
| Q33695266 | Nucleosome positioning: how is it established, and why does it matter? |
| Q80238247 | Nucleosome positions predicted through comparative genomics |
| Q34450175 | Nucleosome-mediated cooperativity between transcription factors |
| Q38445956 | Painting a perspective on the landscape of nucleosome positioning |
| Q36953529 | Periodic distribution of a putative nucleosome positioning motif in human, nonhuman primates, and archaea: mutual information analysis |
| Q35062653 | Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure |
| Q33238304 | Periodicity of SNP distribution around transcription start sites |
| Q28468514 | Plasmodium falciparum Nucleosomes Exhibit Reduced Stability and Lost Sequence Dependent Nucleosome Positioning |
| Q33363096 | Predicting human nucleosome occupancy from primary sequence |
| Q37863850 | Predicting nucleosome positioning in genomes: Physical and bioinformatic approaches |
| Q33615372 | Predicting nucleosome positioning using a duration Hidden Markov Model |
| Q74166721 | Protective nucleosome centering at splice sites as suggested by sequence-directed mapping of the nucleosomes |
| Q41982430 | Quantifying the role of steric constraints in nucleosome positioning |
| Q43026060 | Sequence periodicity in complete genomes of archaea suggests positive supercoiling |
| Q33582659 | Sequence periodicity in nucleosomal DNA and intrinsic curvature |
| Q46087846 | Sequence structure of hidden 10.4-base repeat in the nucleosomes of C. elegans |
| Q38078583 | Sequence-dependent collective properties of DNAs and their role in biological systems |
| Q56898414 | Sequence-directed mapping of nucleosome positions |
| Q44855205 | Single-base resolution nucleosome mapping on DNA sequences |
| Q36245183 | Telomeres in evolution and evolution of telomeres |
| Q34907179 | The DNA-encoded nucleosome organization of a eukaryotic genome |
| Q33686431 | The biology of eukaryotic promoter prediction--a review |
| Q37406068 | The coexistence of the nucleosome positioning code with the genetic code on eukaryotic genomes |
| Q33247480 | The features of Drosophila core promoters revealed by statistical analysis |
| Q92875100 | The nucleosome position-encoding WW/SS sequence pattern is depleted in mammalian genes relative to other eukaryotes |
| Q37512527 | The unique structure of A-tracts and intrinsic DNA bending |
| Q48098895 | Three sequence rules for chromatin |
| Q39721189 | Transcription factor access to chromatin |
| Q74069743 | Transition between two forms of heterochromatin at plant subtelomeres |
| Q39724137 | Unique translational positioning of nucleosomes on synthetic DNAs |
| Q45347947 | Universal full-length nucleosome mapping sequence probe. |
| Q34897837 | Unusual DNA structures associated with germline genetic activity in Caenorhabditis elegans |
| Q38894519 | Variety of genomic DNA patterns for nucleosome positioning |
| Q46968489 | Visible periodicity of strong nucleosome DNA sequences. |
| Q30458944 | Wavelet Analysis of DNA Bending Profiles reveals Structural Constraints on the Evolution of Genomic Sequences. |
| Q34747190 | What positions nucleosomes?--A model |
| Q51496632 | Yeast nucleosome DNA pattern: deconvolution from genome sequences of S. cerevisiae |
| Q90381799 | ZCMM: A Novel Method Using Z-Curve Theory- Based and Position Weight Matrix for Predicting Nucleosome Positioning |
| Q40420289 | iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition |
| Q57022615 | iNuc-ext-PseTNC: an efficient ensemble model for identification of nucleosome positioning by extending the concept of Chou's PseAAC to pseudo-tri-nucleotide composition |
Search more.