Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis

scientific article published on 04 May 2007

Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/JB.00178-07
P932PMC publication ID1913449
P698PubMed publication ID17483226

P50authorSigrid De KeersmaeckerQ58144480
Michael McClellandQ37376271
Abeer FaddaQ38318417
Kristof EngelenQ38318439
Kathleen MarchalQ38318457
P2093author name stringHui Zhao
Jos Vanderleyden
Inge M V Thijs
P2860cites workDNA sequencing with chain-terminating inhibitorsQ22066207
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2Q22122369
Significance analysis of microarrays applied to the ionizing radiation responseQ24606608
Differential activation and function of Rho GTPases during Salmonella-host cell interactionsQ24682783
Detection and characterization of the S. typhimurium HilA proteinQ24793934
Extraction of transcription regulatory signals from genome-wide DNA-protein interaction dataQ24801351
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA associationQ27933908
Macrophage-dependent induction of the Salmonella pathogenicity island 2 type III secretion system and its role in intracellular survivalQ27976514
Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routinesQ28131620
Dissecting the PhoP regulatory network of Escherichia coli and Salmonella entericaQ29346724
Rho GTPases and their effector proteinsQ29547740
SH3 domains in prokaryotesQ30175759
Integration of omics data: how well does it work for bacteria?Q31066785
Systematic analysis of the regulation of type three secreted effectors in Salmonella enterica serovar Typhimurium.Q33269622
SopE and SopE2 from Salmonella typhimurium activate different sets of RhoGTPases of the host cellQ33335734
Molecular basis of the interaction of Salmonella with the intestinal mucosa.Q33558343
The ability of Salmonella to enter mammalian cells is affected by bacterial growth stateQ33616743
Identification of a novel Salmonella invasion locus homologous to Shigella ipgDEQ33727694
Identification and sequence analysis of a 27-kilobase chromosomal fragment containing a Salmonella pathogenicity island located at 92 minutes on the chromosome map of Salmonella enterica serovar typhimurium LT2Q33756666
Microarray analysis and motif detection reveal new targets of the Salmonella enterica serovar Typhimurium HilA regulatory protein, including hilA itself.Q33855706
Unravelling the mysteries of virulence gene regulation in Salmonella typhimuriumQ33938222
Epitope tagging of chromosomal genes in SalmonellaQ33953109
InvF is required for expression of genes encoding proteins secreted by the SPI1 type III secretion apparatus in Salmonella typhimuriumQ33992712
Differential regulation of Salmonella typhimurium type III secreted proteins by pathogenicity island 1 (SPI-1)-encoded transcriptional activators InvF and hilA.Q34001486
Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coliQ34010272
Differences in gene content between Salmonella enterica serovar Enteritidis isolates and comparison to closely related serovars Gallinarum and Dublin.Q34048325
Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle.Q34049410
Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sitesQ34116983
Pathways leading from BarA/SirA to motility and virulence gene expression in Salmonella.Q34232554
Salmonella interactions with host cells: type III secretion at workQ34425135
The Salmonella pathogenicity island-1 type III secretion systemQ34469814
Salmonella typhimurium outer membrane remodeling: role in resistance to host innate immunityQ34469853
Identification of new flagellar genes of Salmonella enterica serovar TyphimuriumQ34513676
In vivo footprinting of a muscle specific enhancer by ligation mediated PCR.Q34550385
The two murein lipoproteins of Salmonella enterica serovar Typhimurium contribute to the virulence of the organismQ34759935
Pathogenesis of Salmonella-induced enteritis.Q35047528
PhoP-induced genes within Salmonella pathogenicity island 1.Q35075680
Identifying global regulators in transcriptional regulatory networks in bacteriaQ35565608
SseL, a Salmonella deubiquitinase required for macrophage killing and virulence.Q35645616
RtsA and RtsB coordinately regulate expression of the invasion and flagellar genes in Salmonella enterica serovar Typhimurium.Q35662912
Role for Salmonella enterica enterobacterial common antigen in bile resistance and virulenceQ35662952
High-throughput screening of chromatin immunoprecipitates using CpG-island microarraysQ35671786
ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experimentsQ35676599
SseL is a salmonella-specific translocated effector integrated into the SsrB-controlled salmonella pathogenicity island 2 type III secretion system.Q35689269
A non-redundant microarray of genes for two related bacteriaQ39744491
FNR-mediated oxygen-responsive regulation of the nrdDG operon of Escherichia coliQ39852920
Salmonella Pathogenicity Island 4 encodes a giant non-fimbrial adhesin and the cognate type 1 secretion systemQ40153848
Salmonella Typhimurium SPI-1 genes promote intestinal but not tonsillar colonization in pigsQ40206846
Global gene expression of a murein (Braun) lipoprotein mutant of Salmonella enterica serovar Typhimurium by microarray analysisQ40338004
SipA, SopA, SopB, SopD, and SopE2 contribute to Salmonella enterica serotype typhimurium invasion of epithelial cells.Q40735292
The secreted effector protein of Salmonella dublin, SopA, is translocated into eukaryotic cells and influences the induction of enteritisQ40826505
RfaH and the ops element, components of a novel system controlling bacterial transcription elongationQ41487154
hilA is a novel ompR/toxR family member that activates the expression of Salmonella typhimurium invasion genesQ42638991
Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella entericaQ43533379
Signal-dependent binding of the response regulators PhoP and PmrA to their target promoters in vivoQ45166508
Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genesQ47864447
A secreted effector protein of Salmonella dublin is translocated into eukaryotic cells and mediates inflammation and fluid secretion in infected ileal mucosaQ48042710
SopE, a secreted protein of Salmonella dublin, is translocated into the target eukaryotic cell via a sip-dependent mechanism and promotes bacterial entryQ48059335
INCLUSive: integrated clustering, upstream sequence retrieval and motif samplingQ48318367
Contribution of the SirA regulon to biofilm formation in Salmonella enterica serovar TyphimuriumQ50075877
Identification of host-specific colonization factors of Salmonella enterica serovar TyphimuriumQ50095526
The cis requirements for transcriptional activation by HilA, a virulence determinant encoded on SPI-1.Q50119966
The putative invasion protein chaperone SicA acts together with InvF to activate the expression of Salmonella typhimurium virulence genesQ50122261
Salmonella SirA is a global regulator of genes mediating enteropathogenesisQ50127381
Identification of a pathogenicity island required for Salmonella enteropathogenicityQ50129531
Co-ordinate regulation of Salmonella typhimurium invasion genes by environmental and regulatory factors is mediated by control of hilA expressionQ50136962
SiiE is secreted by the Salmonella enterica serovar Typhimurium pathogenicity island 4-encoded secretion system and contributes to intestinal colonization in cattleQ35689535
A substrate of the centisome 63 type III protein secretion system of Salmonella typhimurium is encoded by a cryptic bacteriophage.Q35928813
Cellular microbiology of intracellular Salmonella enterica: functions of the type III secretion system encoded by Salmonella pathogenicity island 2.Q35959536
Bacteriophage-encoded type III effectors in Salmonella enterica subspecies 1 serovar TyphimuriumQ35965061
Targeting of the actin cytoskeleton during infection by Salmonella strainsQ36049312
Genetic and environmental control of salmonella invasionQ36070048
Salmonella invasion gene regulation: a story of environmental awarenessQ36070053
Salmonella type III secretion effectors: pulling the host cell's stringsQ36365970
Adaptation to the host environment: regulation of the SPI1 type III secretion system in Salmonella enterica serovar Typhimurium.Q36701362
Identification of a virulence locus encoding a second type III secretion system in Salmonella typhimuriumQ37698755
An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experimentsQ38287394
The HilA box and sequences outside it determine the magnitude of HilA-dependent activation of P(prgH) from Salmonella pathogenicity island 1.Q38298661
The Spo0A regulon of Bacillus subtilisQ38347292
Salmonella enterica serovar Enteritidis colonization of the chicken caecum requires the HilA regulatory proteinQ38444330
Salmonella host cell invasion emerged by acquisition of a mosaic of separate genetic elements, including Salmonella pathogenicity island 1 (SPI1), SPI5, and sopE2.Q39503254
Contribution of Salmonella typhimurium virulence factors to diarrheal disease in calvesQ39512031
Aromatic-dependent Salmonella typhimurium are non-virulent and effective as live vaccinesQ39513114
Multiple factors independently regulate hilA and invasion gene expression in Salmonella enterica serovar typhimuriumQ39538569
Mutations in Salmonella pathogenicity island 2 (SPI2) genes affecting transcription of SPI1 genes and resistance to antimicrobial agentsQ39567676
ECA, the enterobacterial common antigenQ39585265
Identification of SopE2, a Salmonella secreted protein which is highly homologous to SopE and involved in bacterial invasion of epithelial cellsQ39587251
Type III secretion chaperone-dependent regulation: activation of virulence genes by SicA and InvF in Salmonella typhimurium.Q39645093
The Salmonella enterica serotype typhimurium effector proteins SipA, SopA, SopB, SopD, and SopE2 act in concert to induce diarrhea in calves.Q39655497
Evolution of transcription factors and the gene regulatory network in Escherichia coliQ39735217
P4510describes a project that useslimmaQ112236343
P433issue13
P407language of work or nameEnglishQ1860
P921main subjectSalmonella entericaQ2264864
P1104number of pages10
P304page(s)4587-4596
P577publication date2007-05-04
P1433published inJournal of BacteriologyQ478419
P1476titleDelineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis
P478volume189

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