The family 21 carbohydrate-binding module of glucoamylase from Rhizopus oryzae consists of two sites playing distinct roles in ligand binding

scientific article published on June 2006

The family 21 carbohydrate-binding module of glucoamylase from Rhizopus oryzae consists of two sites playing distinct roles in ligand binding is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1042/BJ20051982
P932PMC publication ID1482813
P698PubMed publication ID16509822

P50authorBor-Kai HsiungQ38317915
P2093author name stringTun-Wen Pai
Wei-I Chou
Shi-Hwei Liu
Margaret D-T Chang
P2860cites workCloning and characterisation of a glucoamylase gene (GlaM) from the dimorphic zygomycete Mucor circinelloidesQ44527817
Importance of hydrophobic and polar residues in ligand binding in the family 15 carbohydrate-binding module from Cellvibrio japonicus Xyn10C.Q44537513
Glucoamylase structural, functional, and evolutionary relationshipsQ46719735
Relation between domain evolution, specificity, and taxonomy of the alpha-amylase family members containing a C-terminal starch-binding domainQ48725453
The evolution of starch-binding domainQ48760876
Function of conserved tryptophans in the Aspergillus niger glucoamylase 1 starch binding domain.Q52261990
Characterization of targeting domains by sequence analysis: glycogen-binding domains in protein phosphatases.Q52996426
Both binding sites of the starch-binding domain of Aspergillus niger glucoamylase are essential for inducing a conformational change in amylose 1 1Edited by R. HuberQ54510731
Trp22, Trp24, and Tyr8 Play a Pivotal Role in the Binding of the Family 10 Cellulose-Binding Module fromPseudomonasXylanase A to Insoluble Ligands+Q57970653
A new clan of CBM families based on bioinformatics of starch-binding domains from families CBM20 and CBM21Q59462274
Production and purification of a granular-starch-binding domain of glucoamylase 1 from Aspergillus nigerQ68355733
On the origin of the positive band in the far-ultraviolet circular dichroic spectrum of fibronectinQ69942748
Different behavior towards raw starch of three forms of glucoamylase from a Rhizopus spQ69978933
Tetranitromethane. A Reagent for the Nitration of Tyrosyl Residues in Proteins*Q71210071
Quantitation of tryptophan and tyrosine residues in proteins by fourth-derivative spectroscopyQ72383548
Differential scanning calorimetric, circular dichroism, and Fourier transform infrared spectroscopic characterization of the thermal unfolding of xylanase A from Streptomyces lividansQ78675911
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis toolsQ24248165
A classification of glycosyl hydrolases based on amino acid sequence similaritiesQ24527325
SWISS-MODEL: An automated protein homology-modeling serverQ24672647
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysisQ24793553
Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVAII) hydrolyzing cyclodextrins and pullulan at 2.6 A resolutionQ27618081
Crystal structure of beta-amylase from Bacillus cereus var. mycoides at 2.2 A resolutionQ27618378
Structure of raw starch-digesting Bacillus cereus beta-amylase complexed with maltoseQ27618416
The X6 "thermostabilizing" domains of xylanases are carbohydrate-binding modules: structure and biochemistry of the Clostridium thermocellum X6b domainQ27622578
Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 1 with malto-oligosaccharides demonstrate the role of domain N acting as a starch-binding domainQ27642833
Nucleotide sequence and X-ray structure of cyclodextrin glycosyltransferase from Bacillus circulans strain 251 in a maltose-dependent crystal formQ27730944
Crystal structure at 2.3 A resolution and revised nucleotide sequence of the thermostable cyclodextrin glycosyltransferase from Thermonanaerobacterium thermosulfurigenes EM1Q27732620
Solution structure of the granular starch binding domain of glucoamylase from Aspergillus niger by nuclear magnetic resonance spectroscopyQ27733149
SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modelingQ27860614
Molecular mechanism in alpha-glucosidase and glucoamylaseQ28249335
Carbohydrate-binding modules: fine-tuning polysaccharide recognitionQ29547768
Enhanced genome annotation using structural profiles in the program 3D-PSSMQ29547847
JPred: a consensus secondary structure prediction serverQ29614378
NPS@: network protein sequence analysisQ29616421
Glucoamylase: structure/function relationships, and protein engineeringQ30168530
A structural and functional analysis of alpha-glucan recognition by family 25 and 26 carbohydrate-binding modules reveals a conserved mode of starch recognitionQ34460357
Microbial starch-binding domainQ36153752
The non-catalytic cellulose-binding domain of a novel cellulase from Pseudomonas fluorescens subsp. cellulosa is important for the efficient hydrolysis of Avicel.Q36690135
New type of starch-binding domain: the direct repeat motif in the C-terminal region of Bacillus sp. no. 195 alpha-amylase contributes to starch binding and raw starch degrading.Q38309254
Pseudomonas cellulose-binding domains mediate their effects by increasing enzyme substrate proximityQ38338200
Aromatic stacking in the sugar binding site of the lactose permeaseQ38357850
Sequence homology between putative raw-starch binding domains from different starch-degrading enzymesQ42804732
Glucoamylase starch-binding domain of Aspergillus niger B1: molecular cloning and functional characterizationQ43002923
Importance of the carbohydrate-binding module of Clostridium stercorarium Xyn10B to xylan hydrolysisQ43555935
Role of hydrogen bonding in the interaction between a xylan binding module and xylanQ43600298
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectRhizopus oryzaeQ3024179
ligand bindingQ61659151
P1104number of pages9
P304page(s)469-477
P577publication date2006-06-01
P1433published inBiochemical JournalQ864221
P1476titleThe family 21 carbohydrate-binding module of glucoamylase from Rhizopus oryzae consists of two sites playing distinct roles in ligand binding
P478volume396

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cites work (P2860)
Q35274698CBM3d, a novel subfamily of family 3 carbohydrate-binding modules identified in Cel48A exoglucanase of Cellulosilyticum ruminicola
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Q50503354Circular permutation of the starch-binding domain: inversion of ligand selectivity with increased affinity
Q27675431Crystal Structure of Circular Permuted RoCBM21 (CP90): Dimerisation and Proximity of Binding Sites
Q27687066Crystal structures of starch binding domain from Rhizopus oryzae glucoamylase in complex with isomaltooligosaccharide: insights into polysaccharide binding mechanism of CBM21 family
Q28744654Hydrophilic aromatic residue and in silico structure for carbohydrate binding module
Q59137625Identification of the substrate recruitment mechanism of the muscle glycogen protein phosphatase 1 holoenzyme
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Q37346106Physiochemical properties and kinetics of glucoamylase produced from deoxy-d-glucose resistant mutant of Aspergillus niger for soluble starch hydrolysis.
Q31113624Prediction of conformational epitopes with the use of a knowledge-based energy function and geometrically related neighboring residue characteristics
Q33288922Role of the linker region in the expression of Rhizopus oryzae glucoamylase
Q38307453Solution structure of family 21 carbohydrate-binding module from Rhizopus oryzae glucoamylase
Q50527353Starch-binding domains in the CBM45 family--low-affinity domains from glucan, water dikinase and α-amylase involved in plastidial starch metabolism
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Q28729117Two unique ligand-binding clamps of Rhizopus oryzae starch binding domain for helical structure disruption of amylose

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