The Matrix Reloaded: Probing the Extracellular Matrix Synchronizes Bacterial Communities

scientific article published on 30 March 2015

The Matrix Reloaded: Probing the Extracellular Matrix Synchronizes Bacterial Communities is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/JB.02516-14
P932PMC publication ID4455261
P698PubMed publication ID25825428
P5875ResearchGate publication ID274318445

P2093author name stringIlana Kolodkin-Gal
Nitai Steinberg
P2860cites workExtracellular DNA Required for Bacterial Biofilm FormationQ22065541
A bacterial extracellular DNA inhibits settling of motile progeny cells within a biofilmQ22065688
Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilmQ24538827
Expression of Fap amyloids in Pseudomonas aeruginosa, P. fluorescens, and P. putida results in aggregation and increased biofilm formationQ24611380
Signals, regulatory networks, and materials that build and break bacterial biofilmsQ24644554
Poly-N-acetylglucosamine mediates biofilm formation and antibiotic resistance in Actinobacillus pleuropneumoniaeQ24678551
The intercellular adhesin involved in biofilm accumulation of Staphylococcus epidermidis is a linear beta-1,6-linked glucosaminoglycan: purification and structural analysisQ24684968
Cyclic di-GMP: the first 25 years of a universal bacterial second messengerQ26850396
Identification of Bacillus subtilis SipW as a bifunctional signal peptidase that controls surface-adhered biofilm formationQ36018317
Galactose metabolism plays a crucial role in biofilm formation by Bacillus subtilisQ36165454
A cyclic-di-GMP receptor required for bacterial exopolysaccharide productionQ36319174
Trail following by gliding bacteriaQ36406681
Molecular architecture and assembly principles of Vibrio cholerae biofilmsQ36441854
A Bacillus subtilis sensor kinase involved in triggering biofilm formation on the roots of tomato plantsQ36456302
Self-produced exopolysaccharide is a signal that stimulates biofilm formation in Pseudomonas aeruginosa.Q36483723
Liquid transport facilitated by channels in Bacillus subtilis biofilmsQ36545530
Activity of Proteus mirabilis FliL is viscosity dependent and requires extragenic DNAQ36581232
Functional amyloid--from bacteria to humans.Q36782474
Bacillus subtilis biofilm induction by plant polysaccharidesQ36798954
Molecular basis of intercellular adhesion in the biofilm-forming Staphylococcus epidermidisQ36820016
Isolation, characterization, and aggregation of a structured bacterial matrix precursor.Q36929038
Second messenger regulation of biofilm formation: breakthroughs in understanding c-di-GMP effector systemsQ37074141
Myxococcus-from single-cell polarity to complex multicellular patternsQ37208843
The developmental model of microbial biofilms: ten years of a paradigm up for reviewQ37375384
Vibrio biofilms: so much the same yet so differentQ37397388
The pgaABCD locus of Escherichia coli promotes the synthesis of a polysaccharide adhesin required for biofilm formationQ37425741
Myxobacterial tools for social interactionsQ26852949
Exopolysaccharide-independent social motility of Myxococcus xanthusQ27437685
BslA is a self-assembling bacterial hydrophobin that coats the Bacillus subtilis biofilm.Q27679313
Bacterial biofilms: a common cause of persistent infectionsQ27861033
Pilus retraction powers bacterial twitching motilityQ28138923
Holins: the protein clocks of bacteriophage infectionsQ28140369
A genetic basis for Pseudomonas aeruginosa biofilm antibiotic resistanceQ28185783
Antibiotic resistance of bacteria in biofilmsQ28207706
Chemosensory pathways, motility and development in Myxococcus xanthusQ28252502
Bacterial community morphogenesis is intimately linked to the intracellular redox stateQ28282739
Biofilms: the matrix revisitedQ28301704
Modulation of eDNA release and degradation affects Staphylococcus aureus biofilm maturationQ28475591
Functional amyloids composed of phenol soluble modulins stabilize Staphylococcus aureus biofilmsQ28484163
Exopolymer diversity and the role of levan in Bacillus subtilis biofilmsQ28487156
Fruiting body formation by Bacillus subtilisQ28488966
Genes involved in matrix formation in Pseudomonas aeruginosa PA14 biofilmsQ28492476
Pseudomonas aeruginosa uses a cyclic-di-GMP-regulated adhesin to reinforce the biofilm extracellular matrixQ28492633
A chemosensory system that regulates biofilm formation through modulation of cyclic diguanylate levelsQ28492697
Psl trails guide exploration and microcolony formation in Pseudomonas aeruginosa biofilmsQ28492751
SadC reciprocally influences biofilm formation and swarming motility via modulation of exopolysaccharide production and flagellar functionQ28492826
Involvement of bacterial migration in the development of complex multicellular structures in Pseudomonas aeruginosa biofilmsQ28492897
Connecting quorum sensing, c-di-GMP, pel polysaccharide, and biofilm formation in Pseudomonas aeruginosa through tyrosine phosphatase TpbA (PA3885)Q28492910
The Pel and Psl polysaccharides provide Pseudomonas aeruginosa structural redundancy within the biofilm matrixQ28492919
Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3'-5')-cyclic-GMP in virulenceQ28492942
SiaA and SiaD are essential for inducing autoaggregation as a specific response to detergent stress in Pseudomonas aeruginosaQ28492982
The FleQ protein from Pseudomonas aeruginosa functions as both a repressor and an activator to control gene expression from the pel operon promoter in response to c-di-GMPQ28493013
Genetic and biochemical analyses of the Pseudomonas aeruginosa Psl exopolysaccharide reveal overlapping roles for polysaccharide synthesis enzymes in Psl and LPS productionQ28493036
Roles of type IV pili, flagellum-mediated motility and extracellular DNA in the formation of mature multicellular structures in Pseudomonas aeruginosa biofilmsQ28493090
Identification of FleQ from Pseudomonas aeruginosa as a c-di-GMP-responsive transcription factorQ28493129
Biosynthesis of the Pseudomonas aeruginosa Extracellular Polysaccharides, Alginate, Pel, and PslQ28493240
Exopolysaccharide biosynthesis genes required for social motility in Myxococcus xanthusQ46917140
A poly-gamma-glutamate synthetic system of Bacillus subtilis IFO 3336: gene cloning and biochemical analysis of poly-gamma-glutamate produced by Escherichia coli clone cellsQ47929012
Genetic analysis of Salmonella enteritidis biofilm formation: critical role of celluloseQ48310893
AgfC and AgfE facilitate extracellular thin aggregative fimbriae synthesis in Salmonella enteritidisQ50073011
Distinct roles of extracellular polymeric substances in Pseudomonas aeruginosa biofilm developmentQ57660217
The superficial life of microbesQ59086106
Analysis of the role of flagellar activity in virulence gene expression in Vibrio choleraeQ73703335
Conserved serine and histidine residues are critical for activity of the ER-type signal peptidase SipW of Bacillus subtilisQ73825602
The Staphylococcus aureus surface protein SasG and its homologues promote bacterial adherence to human desquamated nasal epithelial cellsQ79107849
Fibronectin-binding proteins and clumping factor A in Staphylococcus aureus experimental endocarditis: FnBPA is sufficient to activate human endothelial cellsQ80059316
A molecular clutch disables flagella in the Bacillus subtilis biofilmQ81485635
Morphological optimization for access to dual oxidants in biofilmsQ28660646
Principles of c-di-GMP signalling in bacteriaQ29615333
Biofilm formation as microbial developmentQ29619202
Cellulose biosynthesis and function in bacteriaQ30501479
Self-organization of bacterial biofilms is facilitated by extracellular DNA.Q30541450
Cellulose as an architectural element in spatially structured Escherichia coli biofilmsQ30564111
Sticking together: building a biofilm the Bacillus subtilis way.Q30572854
Biofilm formation by Pseudomonas aeruginosa wild type, flagella and type IV pili mutantsQ30944663
Alginate production affects Pseudomonas aeruginosa biofilm development and architecture, but is not essential for biofilm formationQ31074516
Spatial patterns of DNA replication, protein synthesis, and oxygen concentration within bacterial biofilms reveal diverse physiological statesQ33276824
Roles of curli, cellulose and BapA in Salmonella biofilm morphology studied by atomic force microscopyQ33291602
Physiological heterogeneity in biofilmsQ33319084
Localized gene expression in Pseudomonas aeruginosa biofilmsQ33335659
Type IV pili and cell motilityQ33601596
Spatial physiological heterogeneity in Pseudomonas aeruginosa biofilm is determined by oxygen availabilityQ33718373
Amyloid fibers provide structural integrity to Bacillus subtilis biofilmsQ33719842
The EpsE flagellar clutch is bifunctional and synergizes with EPS biosynthesis to promote Bacillus subtilis biofilm formation.Q33775505
The pel polysaccharide can serve a structural and protective role in the biofilm matrix of Pseudomonas aeruginosa.Q33813210
Role of exopolysaccharides in Pseudomonas aeruginosa biofilm formation and architectureQ33930259
Direct observation of extension and retraction of type IV piliQ33948884
Self-regulation of exopolysaccharide production in Bacillus subtilis by a tyrosine kinaseQ33984513
Secretion, localization, and antibacterial activity of TasA, a Bacillus subtilis spore-associated protein.Q33991430
Control of synthesis and secretion of the Bacillus subtilis protein YqxM.Q33993228
The intercellular adhesion (ica) locus is present in Staphylococcus aureus and is required for biofilm formationQ34002214
The ability of Proteus mirabilis to sense surfaces and regulate virulence gene expression involves FliL, a flagellar basal body proteinQ34077175
PilA localization affects extracellular polysaccharide production and fruiting body formation in Myxococcus xanthusQ34112447
Functional amyloid in PseudomonasQ34122369
Characterization of temporal protein production in Pseudomonas aeruginosa biofilmsQ34150961
Signalling to and from tight junctionsQ34180670
BslA(YuaB) forms a hydrophobic layer on the surface of Bacillus subtilis biofilmsQ34263659
Identification of LytSR-regulated genes from Staphylococcus aureusQ34399012
Integrin signaling revisitedQ34446298
Identification of AbrB-regulated genes involved in biofilm formation by Bacillus subtilisQ34468382
A major protein component of the Bacillus subtilis biofilm matrixQ34487145
Biocontrol of tomato wilt disease by Bacillus subtilis isolates from natural environments depends on conserved genes mediating biofilm formationQ37522346
Structure, function and contribution of polysaccharide intercellular adhesin (PIA) to Staphylococcus epidermidis biofilm formation and pathogenesis of biomaterial-associated infectionsQ37632964
Genes involved in the synthesis and degradation of matrix polysaccharide in Actinobacillus actinomycetemcomitans and Actinobacillus pleuropneumoniae biofilmsQ37663117
Dynamics and control of biofilms of the oligotrophic bacterium Caulobacter crescentusQ37663435
From individual cell motility to collective behaviors: insights from a prokaryote, Myxococcus xanthus.Q37957146
Small molecules are natural triggers for the disassembly of biofilmsQ38147620
The roles of extracellular DNA in the structural integrity of extracellular polymeric substance and bacterial biofilm developmentQ38163928
The role of extracellular DNA in the establishment, maintenance and perpetuation of bacterial biofilmsQ38168547
Biofilms, flagella, and mechanosensing of surfaces by bacteriaQ38217430
Extracellular DNA as a target for biofilm controlQ38295476
A mechanical signal transmitted by the flagellum controls signalling in Bacillus subtilis.Q38429797
Biofilm formation and cellulose expression among diverse environmental Pseudomonas isolatesQ38508594
A novel Staphylococcus aureus biofilm phenotype mediated by the fibronectin-binding proteins, FnBPA and FnBPB.Q38608812
Bistability and biofilm formation in Bacillus subtilisQ39257013
Alginate overproduction affects Pseudomonas aeruginosa biofilm structure and functionQ39504806
The Staphylococcus aureus lrgAB operon modulates murein hydrolase activity and penicillin toleranceQ39538529
Role of Escherichia coli curli operons in directing amyloid fiber formationQ39620298
Characterization of the Bacillus subtilis ywsC gene, involved in gamma-polyglutamic acid productionQ39694674
The Staphylococcus aureus cidAB operon: evaluation of its role in regulation of murein hydrolase activity and penicillin toleranceQ39743849
Characterization of Tn917 insertion mutants of Staphylococcus epidermidis affected in biofilm formationQ39824008
Characterization of transposon mutants of biofilm-producing Staphylococcus epidermidis impaired in the accumulative phase of biofilm production: genetic identification of a hexosamine-containing polysaccharide intercellular adhesinQ40374850
Functional analysis of the secretory precursor processing machinery of Bacillus subtilis: identification of a eubacterial homolog of archaeal and eukaryotic signal peptidasesQ40445360
Respiration control of multicellularity in Bacillus subtilis by a complex of the cytochrome chain with a membrane-embedded histidine kinaseQ40595809
Regulation of development and differentiation by the extracellular matrixQ40861926
DNA binding: a novel function of Pseudomonas aeruginosa type IV pili.Q40943125
Acetic acid induces expression of the Staphylococcus aureus cidABC and lrgAB murein hydrolase regulator operonsQ40946556
Two genetic loci produce distinct carbohydrate-rich structural components of the Pseudomonas aeruginosa biofilm matrixQ40993746
Analysis of Pseudomonas aeruginosa conditional psl variants reveals roles for the psl polysaccharide in adhesion and maintaining biofilm structure postattachmentQ41063615
Vibrio cholerae biofilms: stuck between a rock and a hard placeQ41073554
HA receptors: regulators of signalling to the cytoskeletonQ41111718
Insights into Yersinia pestis biofilm development: topology and co-interaction of Hms inner membrane proteins involved in exopolysaccharide productionQ41444920
Caenorhabditis elegans: plague bacteria biofilm blocks food intakeQ41471909
Identification and characterization of RbmA, a novel protein required for the development of rugose colony morphology and biofilm structure in Vibrio choleraeQ41819957
Osmotic pressure can regulate matrix gene expression in Bacillus subtilisQ41848018
Phosphorylation of Spo0A by the histidine kinase KinD requires the lipoprotein med in Bacillus subtilisQ41899167
Defects in the flagellar motor increase synthesis of poly-γ-glutamate in Bacillus subtilisQ41908228
Microanatomy at cellular resolution and spatial order of physiological differentiation in a bacterial biofilmQ42031983
The rbmBCDEF gene cluster modulates development of rugose colony morphology and biofilm formation in Vibrio choleraeQ42039844
Role of Vibrio polysaccharide (vps) genes in VPS production, biofilm formation and Vibrio cholerae pathogenesisQ42185441
Cannibalism enhances biofilm development in Bacillus subtilisQ42359981
Paracrine signaling in a bacteriumQ42565750
Spatial regulation of histidine kinases governing biofilm formation in Bacillus subtilisQ42572200
KinD Is a Checkpoint Protein Linking Spore Formation to Extracellular-Matrix Production in Bacillus subtilis BiofilmsQ42641273
Role of autolysin-mediated DNA release in biofilm formation of Staphylococcus epidermidisQ44248410
Type IV pili function upstream of the Dif chemotaxis pathway in Myxococcus xanthus EPS regulation.Q44921994
Expression of the pgsB encoding the poly-gamma-DL-glutamate synthetase of Bacillus subtilis (natto).Q46023035
Root-secreted malic acid recruits beneficial soil bacteriaQ46344461
Type IV pilus of Myxococcus xanthus is a motility apparatus controlled by the frz chemosensory systemQ46611852
A characterization of DNA release in Pseudomonas aeruginosa cultures and biofilmsQ46906961
Stress responses go three dimensional - the spatial order of physiological differentiation in bacterial macrocolony biofilmsQ34548631
Thinking about Bacillus subtilis as a multicellular organismQ34708579
Medical biofilmsQ34764576
Control of cell fate by the formation of an architecturally complex bacterial communityQ34766655
Mechanisms of antibiotic resistance in bacterial biofilmsQ34796493
Generation of multiple cell types in Bacillus subtilisQ34894210
Extracellular polysaccharides mediate pilus retraction during social motility of Myxococcus xanthusQ34983293
An accessory protein required for anchoring and assembly of amyloid fibres in B. subtilis biofilmsQ35011981
Understanding biofilm resistance to antibacterial agentsQ35058558
Effects of changes in membrane sodium flux on virulence gene expression in Vibrio choleraeQ35068534
Alginate is not a significant component of the extracellular polysaccharide matrix of PA14 and PAO1 Pseudomonas aeruginosa biofilmsQ35147263
Thiopeptide antibiotics stimulate biofilm formation in Bacillus subtilis.Q35189886
Identification of psl, a locus encoding a potential exopolysaccharide that is essential for Pseudomonas aeruginosa PAO1 biofilm formationQ35271492
Putative exopolysaccharide synthesis genes influence Pseudomonas aeruginosa biofilm developmentQ35278987
Extracellular nucleases and extracellular DNA play important roles in Vibrio cholerae biofilm formation.Q35539741
Role of a putative polysaccharide locus in Bordetella biofilm developmentQ35634478
Osmotic spreading of Bacillus subtilis biofilms driven by an extracellular matrixQ35709034
How Staphylococcus aureus biofilms develop their characteristic structure.Q35709319
A spider web strategy of type IV pili-mediated migration to build a fibre-like Psl polysaccharide matrix in Pseudomonas aeruginosa biofilmsQ35738787
Inverse regulation of biofilm formation and swarming motility by Pseudomonas aeruginosa PA14Q35759797
The cidA murein hydrolase regulator contributes to DNA release and biofilm development in Staphylococcus aureus.Q35808933
Biofilm accumulation model that predicts antibiotic resistance of Pseudomonas aeruginosa biofilmsQ35820523
Heterogeneity in Pseudomonas aeruginosa biofilms includes expression of ribosome hibernation factors in the antibiotic-tolerant subpopulation and hypoxia-induced stress response in the metabolically active populationQ35867693
The control of death and lysis in staphylococcal biofilms: a coordination of physiological signalsQ35873760
Survival strategies of infectious biofilmsQ36003660
P407language of work or nameEnglishQ1860
P921main subjectextracellular matrixQ193825
bacterial communityQ129982151
P577publication date2015-03-30
P1433published inJournal of BacteriologyQ478419
P1476titleThe Matrix Reloaded: Probing the Extracellular Matrix Synchronizes Bacterial Communities

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