Phylogenetic analysis of the SAP30 family of transcriptional regulators reveals functional divergence in the domain that binds the nuclear matrix.

scientific article published on 30 June 2009

Phylogenetic analysis of the SAP30 family of transcriptional regulators reveals functional divergence in the domain that binds the nuclear matrix. is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1003342039
P356DOI10.1186/1471-2148-9-149
P932PMC publication ID2711940
P698PubMed publication ID19566944
P5875ResearchGate publication ID26330863

P50authorMarkku MäkiQ16989186
Keijo ViiriQ53463976
Olli LohiQ56480958
P2093author name stringTaisto Y K Heinonen
P2860cites workTGF-beta induces the expression of SAP30L, a novel nuclear proteinQ21266621
Reconstructing the early evolution of Fungi using a six-gene phylogenyQ21972837
CIR, a corepressor linking the DNA binding factor CBF1 to the histone deacetylase complexQ22008610
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
SAP30, a novel protein conserved between human and yeast, is a component of a histone deacetylase complexQ24311791
Histone deacetylases and SAP18, a novel polypeptide, are components of a human Sin3 complexQ24320470
Chromatin association of human origin recognition complex, cdc6, and minichromosome maintenance proteins during the cell cycle: assembly of prereplication complexes in late mitosisQ24515107
Tumor suppressor SMAR1 mediates cyclin D1 repression by recruitment of the SIN3/histone deacetylase 1 complexQ24534882
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
SAP30L interacts with members of the Sin3A corepressor complex and targets Sin3A to the nucleolusQ24550832
DNA-binding and -bending activities of SAP30L and SAP30 are mediated by a zinc-dependent module and monophosphoinositidesQ24655211
Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungiQ24672301
NMPdb: Database of Nuclear Matrix ProteinsQ24797854
Solution structure of a novel zinc finger motif in the SAP30 polypeptide of the Sin3 corepressor complex and its potential role in nucleic acid recognitionQ27653832
A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factorsQ27933069
A general requirement for the Sin3-Rpd3 histone deacetylase complex in regulating silencing in Saccharomyces cerevisiae.Q27934391
Alternative mRNA splicing of SAP30L regulates its transcriptional repression activityQ28119019
Modulation of YY1 activity by SAP30Q28176911
SAP30, a component of the mSin3 corepressor complex involved in N-CoR-mediated repression by specific transcription factorsQ28279441
The DNA sequence and comparative analysis of human chromosome 5Q28282527
A molecular timescale for vertebrate evolutionQ29547791
The UCSC Genome Browser Database: 2008 updateQ29614575
Fast and sensitive multiple sequence alignments on a microcomputerQ29618252
The origin and evolution of model organismsQ29618563
DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.Q30330085
Impaired intranuclear trafficking of Runx2 (AML3/CBFA1) transcription factors in breast cancer cells inhibits osteolysis in vivo.Q33819359
Mitotic occupancy and lineage-specific transcriptional control of rRNA genes by Runx2.Q34002132
Evolutionary conservation of zebrafish linkage group 14 with frequently deleted regions of human chromosome 5 in myeloid malignanciesQ34028179
Human THAP7 is a chromatin-associated, histone tail-binding protein that represses transcription via recruitment of HDAC3 and nuclear hormone receptor corepressorQ34370639
A comparative map of the zebrafish genomeQ35089286
Functional divergence in protein (family) sequence evolutionQ35179948
The corepressor mSin3A regulates phosphorylation-induced activation, intranuclear location, and stability of AML1.Q35544219
Identification of a nuclear matrix targeting signal in the leukemia and bone-related AML/CBF-alpha transcription factorsQ36239602
Genome-wide analysis of HDAC functionQ36253947
Nuclear microenvironments in biological control and cancer.Q36830704
Delayed rRNA processing results in significant ribosome biogenesis and functional defectsQ39740408
The mSin3A chromatin-modifying complex is essential for embryogenesis and T-cell developmentQ42176327
The temporal distribution of gene duplication events in a set of highly conserved human gene familiesQ42692396
Evolution from fish to mammals by gene duplicationQ45239092
A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences.Q51936782
Statistical methods for testing functional divergence after gene duplicationQ73289812
P407language of work or nameEnglishQ1860
P921main subjectphylogeneticsQ171184
P304page(s)149
P577publication date2009-06-30
P1433published inBMC Evolutionary BiologyQ13418959
P1476titlePhylogenetic analysis of the SAP30 family of transcriptional regulators reveals functional divergence in the domain that binds the nuclear matrix
P478volume9

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cites work (P2860)
Q34094666Drosophila SIN3 isoforms interact with distinct proteins and have unique biological functions.
Q28607477Dynamic gene expression in the song system of zebra finches during the song learning period
Q28114970Redox-dependent disulfide bond formation in SAP30L corepressor protein: Implications for structure and function
Q47073496SAP30L (Sin3A-associated protein 30-like) is involved in regulation of cardiac development and hematopoiesis in zebrafish embryos
Q27670449Structure of the 30-kDa Sin3-associated Protein (SAP30) in Complex with the Mammalian Sin3A Corepressor and Its Role in Nucleic Acid Binding