scholarly article | Q13442814 |
P50 | author | Lucy R. Forrest | Q57016893 |
Claudio Anselmi | Q57716723 | ||
P2093 | author name string | José D Faraldo-Gómez | |
René Staritzbichler | |||
P2860 | cites work | CHARMM: the biomolecular simulation program | Q24658108 |
Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms | Q24673118 | ||
Complete ion-coordination structure in the rotor ring of Na+-dependent F-ATP synthases | Q27655754 | ||
Structural basis of Na(+)-independent and cooperative substrate/product antiport in CaiT | Q27664405 | ||
Bioenergetic cost of making an adenosine triphosphate molecule in animal mitochondria | Q27664534 | ||
All-atom empirical potential for molecular modeling and dynamics studies of proteins | Q27860468 | ||
Scalable molecular dynamics with NAMD | Q27860718 | ||
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes | Q27860838 | ||
GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation | Q27860944 | ||
Setting up and optimization of membrane protein simulations. | Q30330364 | ||
Coarse-grained MD simulations of membrane protein-bilayer self-assembly. | Q30368740 | ||
g_membed: Efficient insertion of a membrane protein into an equilibrated lipid bilayer with minimal perturbation | Q30387289 | ||
A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure | Q30429158 | ||
A structural mechanism for MscS gating in lipid bilayers | Q30435591 | ||
Rotation of lipids in membranes: molecular dynamics simulation, 31P spin-lattice relaxation, and rigid-body dynamics | Q31142655 | ||
Automated builder and database of protein/membrane complexes for molecular dynamics simulations | Q33298604 | ||
Structure of the rotor of the V-Type Na+-ATPase from Enterococcus hirae | Q33986124 | ||
Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer | Q35926896 | ||
Setting up and running molecular dynamics simulations of membrane proteins | Q36762780 | ||
Sensing voltage across lipid membranes | Q37069037 | ||
Biophysical dissection of membrane proteins. | Q37490825 | ||
Osmolality, temperature, and membrane lipid composition modulate the activity of betaine transporter BetP in Corynebacterium glutamicum | Q42909811 | ||
Transmembrane helix structure, dynamics, and interactions: multi-nanosecond molecular dynamics simulations | Q42928688 | ||
Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism. | Q50104608 | ||
Modulation of glycophorin A transmembrane helix interactions by lipid bilayers: molecular dynamics calculations. | Q52074141 | ||
Structure, energetics, and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer | Q71074649 | ||
P433 | issue | 4 | |
P921 | main subject | membrane protein | Q423042 |
P304 | page(s) | 1167-1176 | |
P577 | publication date | 2011-04-01 | |
P1433 | published in | Journal of Chemical Theory and Computation | Q1768377 |
P1476 | title | GRIFFIN: A versatile methodology for optimization of protein-lipid interfaces for membrane protein simulations | |
P478 | volume | 7 |
Q41461821 | A c subunit with four transmembrane helices and one ion (Na+)-binding site in an archaeal ATP synthase: implications for c ring function and structure |
Q27678908 | A new type of Na(+)-driven ATP synthase membrane rotor with a two-carboxylate ion-coupling motif |
Q42119717 | Alchembed: A Computational Method for Incorporating Multiple Proteins into Complex Lipid Geometries. |
Q97905439 | An embedded lipid in the multidrug transporter LmrP suggests a mechanism for polyspecificity |
Q37662020 | Atomistic simulations indicate the c-subunit ring of the F1Fo ATP synthase is not the mitochondrial permeability transition pore. |
Q98568564 | Bedaquiline inhibits the yeast and human mitochondrial ATP synthases |
Q64910324 | Broadly conserved Na+-binding site in the N-lobe of prokaryotic multidrug MATE transporters. |
Q36539936 | CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues. |
Q38851972 | Challenges in structural approaches to cell modeling |
Q93054243 | Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation |
Q64245550 | Computational Modeling of Realistic Cell Membranes |
Q38949208 | Conformational dynamics of a neurotransmitter:sodium symporter in a lipid bilayer. |
Q35176553 | Coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump AcrB |
Q36056515 | Engineering rotor ring stoichiometries in the ATP synthase |
Q52323091 | High-resolution cryo-EM analysis of the yeast ATP synthase in a lipid membrane. |
Q34495195 | High-resolution structure and mechanism of an F/V-hybrid rotor ring in a Na⁺-coupled ATP synthase |
Q63387646 | Interpretation of spectroscopic data using molecular simulations for the secondary active transporter BetP |
Q37032863 | Mechanism of extracellular ion exchange and binding-site occlusion in a sodium/calcium exchanger |
Q26821837 | Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools |
Q52328005 | Membrane plasticity facilitates recognition of the inhibitor oligomycin by the mitochondrial ATP synthase rotor. |
Q35189790 | On the principle of ion selectivity in Na+/H+-coupled membrane proteins: experimental and theoretical studies of an ATP synthase rotor |
Q39313354 | Predicted Structures of the Proton-Bound Membrane-Embedded Rotor Rings of the Saccharomyces cerevisiae and Escherichia coli ATP Synthases |
Q34003809 | ProBLM web server: protein and membrane placement and orientation package |
Q34752082 | Sodium recognition by the Na+/Ca2+ exchanger in the outward-facing conformation |
Q36610036 | Structural insights into the mechanism of activation of the TRPV1 channel by a membrane-bound tarantula toxin |
Q27678521 | Structure of the c10 ring of the yeast mitochondrial ATP synthase in the open conformation |
Q27324687 | Substrate-bound outward-open state of the betaine transporter BetP provides insights into Na+ coupling |
Q36466214 | Two Na+ Sites Control Conformational Change in a Neurotransmitter Transporter Homolog |
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