Genetic control of root growth: from genes to networks.

scientific article

Genetic control of root growth: from genes to networks. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/AOB/MCV160
P932PMC publication ID4701154
P698PubMed publication ID26558398
P5875ResearchGate publication ID283729330

P50authorRadka SlovakQ41252950
Wolfgang BuschQ41252956
Santosh B SatbhaiQ42223566
P2093author name stringTakehiko Ogura
Daniela Ristova
P2860cites workIntrinsic and environmental response pathways that regulate root system architectureQ36195888
Nitrogen regulation of root branchingQ36337147
Cell-specific nitrogen responses mediate developmental plasticityQ36393066
Interactions between nitrogen and cytokinin in the regulation of metabolism and developmentQ36561324
The GLABRA2 gene encodes a homeo domain protein required for normal trichome development in ArabidopsisQ36723519
High-resolution metabolic mapping of cell types in plant rootsQ36729788
Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architectureQ37173009
Sequential induction of auxin efflux and influx carriers regulates lateral root emergenceQ37279476
Hormonal interactions during root tropic growth: hydrotropism versus gravitropism.Q37350832
Genetic and genomic dissection of maize root development and architectureQ37373922
Transcript profiling of early lateral root initiationQ37416473
Arabidopsis lateral root development: an emerging storyQ37533103
The genetics of quantitative traits: challenges and prospectsQ37544241
Systems genetics approaches to understand complex traitsQ37602800
Cell-cycle control and plant developmentQ37948197
Root phototropism: from dogma to the mechanism of blue light perceptionQ37980361
An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plantsQ38302556
Systems analysis of auxin transport in the Arabidopsis root apexQ38890811
Plant tropisms: providing the power of movement to a sessile organism.Q38995288
Light-sensing in roots.Q39015807
High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in ArabidopsisQ35634502
A gene essential for hydrotropism in roots.Q35663488
Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanismQ35849787
The protein expression landscape of the Arabidopsis root.Q35935676
Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signalingQ35982848
An altered hydrotropic response (ahr1) mutant of Arabidopsis recovers root hydrotropism with cytokininQ36073518
Cell-to-cell movement of the CAPRICE protein in Arabidopsis root epidermal cell differentiation.Q50747699
Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root.Q51553227
Localized iron supply triggers lateral root elongation in Arabidopsis by altering the AUX1-mediated auxin distribution.Q51826667
Phosphate availability alters lateral root development in Arabidopsis by modulating auxin sensitivity via a mechanism involving the TIR1 auxin receptor.Q51943993
Functional analysis of the epidermal-specific MYB genes CAPRICE and WEREWOLF in Arabidopsis.Q51980325
The bHLH genes GL3 and EGL3 participate in an intercellular regulatory circuit that controls cell patterning in the Arabidopsis root epidermis.Q52064183
The bHLH genes GLABRA3 (GL3) and ENHANCER OF GLABRA3 (EGL3) specify epidermal cell fate in the Arabidopsis root.Q52097524
A network of redundant bHLH proteins functions in all TTG1-dependent pathways of Arabidopsis.Q52101695
A kinetic analysis of the auxin transcriptome reveals cell wall remodeling proteins that modulate lateral root development in Arabidopsis.Q53089794
Auxin transport is sufficient to generate a maximum and gradient guiding root growth.Q53520095
Auxin, actin and growth of the Arabidopsis thaliana primary root.Q53560521
Auxin regulates aquaporin function to facilitate lateral root emergenceQ57209427
The auxin influx carrier LAX3 promotes lateral root emergenceQ57209449
Systems GeneticsQ57713309
The NAC Domain Transcription Factors FEZ and SOMBRERO Control the Orientation of Cell Division Plane in Arabidopsis Root Stem CellsQ57902823
Root development in Arabidopsis: four mutants with dramatically altered root morphogenesisQ58158571
The RETINOBLASTOMA-RELATED Gene Regulates Stem Cell Maintenance in Arabidopsis RootsQ58832988
Vascular tissue in the stem and roots of woody plants can conduct lightQ62087435
Lateral root formation is blocked by a gain-of-function mutation in the SOLITARY-ROOT/IAA14 gene of ArabidopsisQ77683162
Role of a positive regulator of root hair development, CAPRICE, in Arabidopsis root epidermal cell differentiationQ78438189
A contradictoryGLABRA3allele helps define gene interactions controlling trichome development inArabidopsisQ79171505
ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in ArabidopsisQ79677907
The Arabidopsis transcription factor MYB77 modulates auxin signal transductionQ80735875
Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in ArabidopsisQ81584536
The microtubule associated protein END BINDING 1 represses root responses to mechanical cuesQ83614954
Analysis of the genome sequence of the flowering plant Arabidopsis thalianaQ22122387
Systems genetics of complex traits in Drosophila melanogasterQ24646936
The shikimate pathway as an entry to aromatic secondary metabolismQ24673312
Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphereQ27027741
Root system architecture from coupling cell shape to auxin transportQ27332219
A thermodynamic switch modulates abscisic acid receptor sensitivityQ27671798
Plant cell-size control: growing by ploidy?Q28143668
Lateral relocation of auxin efflux regulator PIN3 mediates tropism in ArabidopsisQ28201333
Localization of the auxin permease AUX1 suggests two functionally distinct hormone transport pathways operate in the Arabidopsis root apexQ28362209
A mutual support mechanism through intercellular movement of CAPRICE and GLABRA3 can pattern the Arabidopsis root epidermisQ28473717
AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis developmentQ28482481
A gene regulatory network for root epidermis cell differentiation in ArabidopsisQ28732842
Mutations of cellulose synthase (CESA1) phosphorylation sites modulate anisotropic cell expansion and bidirectional mobility of cellulose synthaseQ30496897
A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell divisionQ30528448
PLETHORA gradient formation mechanism separates auxin responsesQ30620361
Positional information in root epidermis is defined during embryogenesis and acts in domains with strict boundaries.Q32067129
An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis rootQ33179270
Whole-genome analysis of the SHORT-ROOT developmental pathway in ArabidopsisQ33241168
An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data setsQ33293530
Dual pathways for regulation of root branching by nitrateQ33333772
The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signalingQ33334673
Clonal analysis of the Arabidopsis root confirms that position, not lineage, determines cell fateQ33334883
A novel two-component hybrid molecule regulates vascular morphogenesis of the Arabidopsis rootQ33335202
Pericycle cell proliferation and lateral root initiation in Arabidopsis.Q33335211
AtPIN4 mediates sink-driven auxin gradients and root patterning in ArabidopsisQ33336995
SCHIZORIZA controls an asymmetric cell division and restricts epidermal identity in the Arabidopsis rootQ33337492
Auxin-mediated cell cycle activation during early lateral root initiationQ33337778
SCARECROW is involved in positioning the stem cell niche in the Arabidopsis root meristemQ33338030
An abscisic acid-sensitive checkpoint in lateral root development of ArabidopsisQ33338079
A gene expression map of the Arabidopsis rootQ33339472
The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis rootsQ33340720
The 14-amino acid CLV3, CLE19, and CLE40 peptides trigger consumption of the root meristem in Arabidopsis through a CLAVATA2-dependent pathwayQ33341430
Cytokinin signaling and its inhibitor AHP6 regulate cell fate during vascular development.Q33341983
Polar PIN localization directs auxin flow in plantsQ33342296
Lateral root initiation or the birth of a new meristemQ33342668
Hidden branches: developments in root system architectureQ33343549
Auxin-dependent regulation of lateral root positioning in the basal meristem of ArabidopsisQ33343590
Cytokinins determine Arabidopsis root-meristem size by controlling cell differentiationQ33343837
Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizersQ33343946
Regulation of the Arabidopsis root vascular initial population by LONESOME HIGHWAY.Q33344260
Auxin acts as a local morphogenetic trigger to specify lateral root founder cells.Q33345686
Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root.Q33346198
A genetic framework for the control of cell division and differentiation in the root meristemQ33346372
The gene regulatory network for root epidermal cell-type pattern formation in ArabidopsisQ33346649
Auxin modulates the transition from the mitotic cycle to the endocycle in ArabidopsisQ33348383
SOMBRERO, BEARSKIN1, and BEARSKIN2 regulate root cap maturation in ArabidopsisQ33348704
JACKDAW controls epidermal patterning in the Arabidopsis root meristem through a non-cell-autonomous mechanismQ33348840
SCHIZORIZA controls tissue system complexity in plantsQ33348985
Secreted Peptide Signals Required for Maintenance of Root Stem Cell Niche in ArabidopsisQ33349709
Oscillating gene expression determines competence for periodic Arabidopsis root branchingQ33349759
A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identityQ33349879
Arabidopsis Tyrosylprotein sulfotransferase acts in the auxin/PLETHORA pathway in regulating postembryonic maintenance of the root stem cell nicheQ33350051
The Arabidopsis thaliana checkpoint kinase WEE1 protects against premature vascular differentiation during replication stressQ33351001
Non-cell-autonomous microRNA165 acts in a dose-dependent manner to regulate multiple differentiation status in the Arabidopsis root.Q33351185
Gravity sensing and signal transduction in vascular plant primary rootsQ33354511
Spatiotemporal regulation of lateral root organogenesis in Arabidopsis by cytokinin.Q33354523
Defective root growth triggered by oxidative stress is controlled through the expression of cell cycle-related genesQ33354640
A bHLH complex controls embryonic vascular tissue establishment and indeterminate growth in ArabidopsisQ33355312
A map of cell type-specific auxin responsesQ33356499
Roles of amyloplasts and water deficit in root tropismsQ39363111
Epidermal patterning genes are active during embryogenesis in ArabidopsisQ40587483
Cytokinin as a positional cue regulating lateral root spacing in ArabidopsisQ40895246
Inference of the Arabidopsis lateral root gene regulatory network suggests a bifurcation mechanism that defines primordia flanking and central zonesQ40973379
Lateral root initiation in Arabidopsis: developmental window, spatial patterning, density and predictability.Q41768957
Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate.Q41774858
The boundary of the meristematic and elongation zones in roots: endoreduplication precedes rapid cell expansionQ41777403
The circadian clock rephases during lateral root organ initiation in Arabidopsis thalianaQ41870567
AtPIN2 defines a locus of Arabidopsis for root gravitropism controlQ41877199
Arabidopsis T-DNA insertional lines for CDC25 are hypersensitive to hydroxyurea but not to zeocin or salt stressQ41887630
Auxin reflux between the endodermis and pericycle promotes lateral root initiation.Q42123364
Modelling and experimental analysis of hormonal crosstalk in ArabidopsisQ42249980
Efflux-dependent auxin gradients establish the apical-basal axis of ArabidopsisQ42452628
A common position-dependent mechanism controls cell-type patterning and GLABRA2 regulation in the root and hypocotyl epidermis of ArabidopsisQ42454783
Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissueQ42465450
The PLETHORA genes mediate patterning of the Arabidopsis root stem cell nicheQ42468459
A stele-enriched gene regulatory network in the Arabidopsis rootQ42652266
Inhibition of phospholipase C disrupts cytoskeletal organization and gravitropic growth in Arabidopsis rootsQ42922704
Is the Arabidopsis root niche protected by sequestration of the CLE40 signal by its putative receptor ACR4?Q43093694
The ABA receptor PYL8 promotes lateral root growth by enhancing MYB77-dependent transcription of auxin-responsive genes.Q43110908
The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.Q43701665
Sites and homeostatic control of auxin biosynthesis in Arabidopsis during vegetative growth.Q43818380
Shoot-derived auxin is essential for early lateral root emergence in Arabidopsis seedlingsQ43885807
Hydrotropism in abscisic acid, wavy, and gravitropic mutants of Arabidopsis thalianaQ44226490
Real-time imaging of cellulose reorientation during cell wall expansion in Arabidopsis rootsQ44310061
The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in ArabidopsisQ44380537
ATR regulates a G2-phase cell-cycle checkpoint in Arabidopsis thalianaQ44838357
ABA plays a central role in mediating the regulatory effects of nitrate on root branching in ArabidopsisQ45711372
Mutations in the NPH1 locus of Arabidopsis disrupt the perception of phototropic stimuli.Q45938099
Plasticity of the Arabidopsis root system under nutrient deficiencies.Q46165489
The Arabidopsis dual-affinity nitrate transporter gene AtNRT1.1 (CHL1) is regulated by auxin in both shoots and rootsQ46395106
Cell identity mediates the response of Arabidopsis roots to abiotic stress.Q46626793
Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thalianaQ46769508
Cytokinins act directly on lateral root founder cells to inhibit root initiationQ46861417
The Emerging Role of Reactive Oxygen Species Signaling during Lateral Root DevelopmentQ46886502
Intercellular movement of the putative transcription factor SHR in root patterning.Q47849182
WEREWOLF, a MYB-related protein in Arabidopsis, is a position-dependent regulator of epidermal cell patterningQ47904549
Phytochromes A and B mediate red-light-induced positive phototropism in rootsQ48026809
Epidermal cell differentiation in Arabidopsis determined by a Myb homolog, CPC.Q48045841
Arabidopsis AUX1 gene: a permease-like regulator of root gravitropismQ48061050
Nitrate-regulated auxin transport by NRT1.1 defines a mechanism for nutrient sensing in plants.Q48694928
Plant development. Integration of growth and patterning during vascular tissue formation in ArabidopsisQ49053343
An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cell-specific analysis of IAA distribution and synthesis.Q50592198
A feedback mechanism controlling SCRAMBLED receptor accumulation and cell-type pattern in Arabidopsis.Q50608908
A high-resolution root spatiotemporal map reveals dominant expression patterns.Q50659214
A spatial accommodation by neighboring cells is required for organ initiation in Arabidopsis.Q50696940
Genome-wide association study using cellular traits identifies a new regulator of root development in ArabidopsisQ33356966
Hormonal control of cell division and elongation along differentiation trajectories in rootsQ33357662
Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in ArabidopsisQ33358228
Cell-Type-Specific Cytokinin Distribution within the Arabidopsis Primary Root ApexQ33361092
Cell fate in the Arabidopsis root meristem determined by directional signallingQ33366741
The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root.Q33367020
Cellular organisation of the Arabidopsis thaliana rootQ33367389
The homeobox gene GLABRA2 is required for position-dependent cell differentiation in the root epidermis of Arabidopsis thaliana.Q33367627
The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root.Q33367745
Organization and cell differentiation in lateral roots of Arabidopsis thalianaQ33367959
Short-range control of cell differentiation in the Arabidopsis root meristemQ33368367
Control of cell division in the root epidermis of Arabidopsis thaliana.Q33368534
Analysis of cell division and elongation underlying the developmental acceleration of root growth in Arabidopsis thalianaQ33368575
The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis rootsQ33646505
Bimodular auxin response controls organogenesis in ArabidopsisQ33664497
Genetics. Systems genetics.Q33702904
Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thalianaQ33732678
Hydrotropism in pea roots in a porous-tube water delivery system.Q34089467
Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth.Q34259625
APL regulates vascular tissue identity in Arabidopsis.Q34276355
Root hydrotropism: an updateQ34318913
The plant vascular system: evolution, development and functionsQ34331061
The ABC of auxin transport: the role of p-glycoproteins in plant developmentQ34477241
Root Architecture and Plant ProductivityQ34527139
Two seven-transmembrane domain MILDEW RESISTANCE LOCUS O proteins cofunction in Arabidopsis root thigmomorphogenesis.Q34609914
GL3 encodes a bHLH protein that regulates trichome development in arabidopsis through interaction with GL1 and TTG1.Q34610784
Mathematical modelling of the Aux/IAA negative feedback loopQ34616476
ARG1 (altered response to gravity) encodes a DnaJ-like protein that potentially interacts with the cytoskeletonQ34960894
Plasticity regulators modulate specific root traits in discrete nitrogen environmentsQ34988058
An Arabidopsis gene regulatory network for secondary cell wall synthesisQ35099051
Dissecting Arabidopsis lateral root developmentQ35113425
The role of nutrient availability in regulating root architecture.Q35130155
Cell identity regulators link development and stress responses in the Arabidopsis rootQ35477030
P433issue1
P407language of work or nameEnglishQ1860
P1104number of pages16
P304page(s)9-24
P577publication date2015-11-11
P1433published inAnnals of BotanyQ1821243
P1476titleGenetic control of root growth: from genes to networks
P478volume117

Reverse relations

cites work (P2860)
Q89719825Auxin-Abscisic Acid Interactions in Plant Growth and Development
Q92756746Characterization of genes required for both Rpg1 and rpg4-mediated wheat stem rust resistance in barley
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Q48300355Genetic architecture of aerial and root traits in field-grown grafted grapevines is largely independent
Q64263560Gibberellins negatively regulate the development of Medicago truncatula root system
Q41139918In Arabidopsis thaliana Cadmium Impact on the Growth of Primary Root by Altering SCR Expression and Auxin-Cytokinin Cross-Talk
Q47605395Melatonin and its relationship to plant hormones.
Q64098270RNA-Seq Transcriptome Analysis of Rice Primary Roots Reveals the Role of Flavonoids in Regulating the Rice Primary Root Growth
Q46436941Regulation of root development in Arabidopsis thaliana by phytohormone-secreting epiphytic methylobacteria.
Q33363450Root Architecture Diversity and Meristem Dynamics in Different Populations of Arabidopsis thaliana
Q28070109Roots Withstanding their Environment: Exploiting Root System Architecture Responses to Abiotic Stress to Improve Crop Tolerance
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