| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1084024814 |
| P356 | DOI | 10.1007/S10482-017-0852-4 |
| P2888 | exact match | https://scigraph.springernature.com/pub.10.1007/s10482-017-0852-4 |
| P698 | PubMed publication ID | 28255640 |
| P50 | author | Emma T. Steenkamp | Q56725410 |
| Pieter De Maayer | Q59823935 | ||
| Theo H M Smits | Q88492638 | ||
| Jochen Blom | Q88525311 | ||
| Teresa A. Coutinho | Q36687101 | ||
| P2093 | author name string | Stephanus N Venter | |
| Brion Duffy | |||
| Elritha van Zyl | |||
| Marike Palmer | |||
| Wai-Yin Chan | |||
| Martin P A Coetzee | |||
| P2860 | cites work | Draft genome sequence of Pantoea agglomerans R190, a producer of antibiotics against phytopathogens and foodborne pathogens. | Q54284377 |
| Horizontal gene transfer in evolution: facts and challenges. | Q55052335 | ||
| Branch Support and Tree Stability | Q55953534 | ||
| The Complexity Hypothesis Revisited: Connectivity Rather Than Function Constitutes a Barrier to Horizontal Gene Transfer | Q56879922 | ||
| Resolving difficult phylogenetic questions: why more sequences are not enough | Q21092718 | ||
| The RAST Server: rapid annotations using subsystems technology | Q21263157 | ||
| Genome trees constructed using five different approaches suggest new major bacterial clades | Q21284133 | ||
| Defining bacterial species in the genomic era: insights from the genus Acinetobacter | Q21558549 | ||
| MEGA6: Molecular Evolutionary Genetics Analysis version 6.0 | Q24498082 | ||
| MUSCLE: multiple sequence alignment with high accuracy and high throughput | Q24613456 | ||
| Comparison of 61 sequenced Escherichia coli genomes | Q24614300 | ||
| Evolutionary dynamics of Clostridium difficile over short and long time scales | Q24622076 | ||
| Horizontal gene transfer among genomes: the complexity hypothesis | Q24651300 | ||
| A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history | Q24671811 | ||
| The bacterial species dilemma and the genomic-phylogenetic species concept | Q24678865 | ||
| Comparative genomics of the lactic acid bacteria | Q24678967 | ||
| From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria | Q24795892 | ||
| New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 | Q27860476 | ||
| ProtTest: selection of best-fit models of protein evolution | Q27860845 | ||
| Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis | Q27860925 | ||
| Increased taxon sampling greatly reduces phylogenetic error | Q28201637 | ||
| Genotypic comparison of Pantoea agglomerans plant and clinical strains | Q28259345 | ||
| Pantoea: insights into a highly versatile and diverse genus within the Enterobacteriaceae | Q28264023 | ||
| Phylogenomics: the beginning of incongruence? | Q28298382 | ||
| FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies | Q28651470 | ||
| RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies | Q28658397 | ||
| FastTree 2--approximately maximum-likelihood trees for large alignments | Q28748616 | ||
| Signature genes as a phylogenomic tool | Q28757678 | ||
| A review of long-branch attraction | Q29397287 | ||
| DAMBE: software package for data analysis in molecular biology and evolution | Q29547724 | ||
| Orthologs, paralogs, and evolutionary genomics | Q29615399 | ||
| An index of substitution saturation and its application | Q29616347 | ||
| Shifting the genomic gold standard for the prokaryotic species definition | Q29616599 | ||
| Prokaryotic evolution in light of gene transfer | Q29617350 | ||
| A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria. | Q30455302 | ||
| Plant-associated symbiotic Burkholderia species lack hallmark strategies required in mammalian pathogenesis | Q30731722 | ||
| Pantoea coffeiphila sp. nov., cause of the 'potato taste' of Arabica coffee from the African Great Lakes region | Q30856220 | ||
| Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle | Q30875297 | ||
| Examining phylogenetic relationships of Erwinia and Pantoea species using whole genome sequence data | Q30988756 | ||
| Pantoea pleuroti sp. nov., Isolated from the Fruiting Bodies of Pleurotus eryngii | Q31025884 | ||
| Erwinia gerundensis sp. nov., a cosmopolitan epiphyte originally isolated from pome fruit trees. | Q31040126 | ||
| Evolutionary systems biology: links between gene evolution and function | Q33256931 | ||
| Pantoea vagans sp. nov., Pantoea eucalypti sp. nov., Pantoea deleyi sp. nov. and Pantoea anthophila sp. nov. | Q33484573 | ||
| Transfer of Pantoea citrea, Pantoea punctata and Pantoea terrea to the genus Tatumella emend. as Tatumella citrea comb. nov., Tatumella punctata comb. nov. and Tatumella terrea comb. nov. and description of Tatumella morbirosei sp. nov. | Q33490352 | ||
| Emended description of the genus Pantoea, description of four species from human clinical samples, Pantoea septica sp. nov., Pantoea eucrina sp. nov., Pantoea brenneri sp. nov. and Pantoea conspicua sp. nov., and transfer of Pectobacterium cypripedi | Q33516840 | ||
| Pantoea gaviniae sp. nov. and Pantoea calida sp. nov., isolated from infant formula and an infant formula production environment | Q33522883 | ||
| Pantoea allii sp. nov., isolated from onion plants and seed | Q33584915 | ||
| Inferring phylogenies from DNA sequences of unequal base compositions | Q33773055 | ||
| Interpreting the universal phylogenetic tree | Q33910024 | ||
| Metabolic versatility and antibacterial metabolite biosynthesis are distinguishing genomic features of the fire blight antagonist Pantoea vagans C9-1. | Q33971402 | ||
| Pantoea rodasii sp. nov., Pantoea rwandensis sp. nov. and Pantoea wallisii sp. nov., isolated from Eucalyptus | Q33992769 | ||
| Toward an efficient method of identifying core genes for evolutionary and functional microbial phylogenies | Q34023960 | ||
| Intraspecies variation in bacterial genomes: the need for a species genome concept | Q34034113 | ||
| Towards a genome-based taxonomy for prokaryotes | Q34048414 | ||
| Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes | Q34263261 | ||
| The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification | Q34311625 | ||
| Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes. | Q34324308 | ||
| Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae | Q34372097 | ||
| Genome sequence of the biocontrol agent Pantoea vagans strain C9-1. | Q34433435 | ||
| En route to a genome-based classification of Archaea and Bacteria? | Q34618936 | ||
| Pantoea agglomerans, a plant pathogen causing human disease | Q34620336 | ||
| Phylogeny of bacterial and archaeal genomes using conserved genes: supertrees and supermatrices | Q34701661 | ||
| Horizontal gene transfer in microbial genome evolution | Q34776774 | ||
| Comparative phylogenomics of pathogenic and non-pathogenic mycobacterium | Q34981293 | ||
| Toward a more robust assessment of intraspecies diversity, using fewer genetic markers | Q35129964 | ||
| The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy | Q35653694 | ||
| Draft genome sequence of Pantoea ananatis B1-9, a nonpathogenic plant growth-promoting bacterium | Q35688844 | ||
| Pantoea intestinalis sp. nov., isolated from the human gut | Q35752777 | ||
| Pantoea theicola sp. nov., isolated from black tea. | Q35752890 | ||
| Analysis of multiple differing copies of the 16S rRNA gene in five clinical isolates and three type strains of Nocardia species and implications for species assignment | Q35784233 | ||
| What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira | Q35927261 | ||
| Pantoea hericii sp. nov., Isolated from the Fruiting Bodies of Hericium erinaceus | Q35929282 | ||
| EDGAR 2.0: an enhanced software platform for comparative gene content analyses | Q35995141 | ||
| Bacterial clade with the ribosomal RNA operon on a small plasmid rather than the chromosome | Q36306123 | ||
| Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides | Q36362699 | ||
| The complete genome sequence and analysis of a plasmid-bearing myxobacterial strain Myxococcus fulvus 124B02 (M 206081). | Q36428355 | ||
| Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead | Q36965445 | ||
| Dealing with incongruence in phylogenomic analyses | Q37292860 | ||
| Genomic evidence for two functionally distinct gene classes. | Q37393145 | ||
| Bacteremic infection with Pantoea ananatis | Q37511269 | ||
| Genome Sequence of the Aerobic Arsenate-Reducing Bacterium Pantoea sp. Strain IMH. | Q37697273 | ||
| Multilocus sequence analysis (MLSA) in prokaryotic taxonomy | Q38470213 | ||
| Draft Genome Sequence of Pantoea anthophila Strain 11-2 from Hypersaline Lake Laysan, Hawaii | Q40681501 | ||
| Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen | Q40744160 | ||
| Draft genome sequence of Pantoea sp. strain A4, a Rafflesia-associated bacterium that produces N-acylhomoserine lactones as quorum-sensing molecules | Q41173096 | ||
| Essentiality Is a Strong Determinant of Protein Rates of Evolution during Mutation Accumulation Experiments in Escherichia coli. | Q42710784 | ||
| An In-depth Analysis of a Multilocus Phylogeny Identifies leuS As a Reliable Phylogenetic Marker for the Genus Pantoea | Q42776296 | ||
| The genetic and structural basis of two distinct terminal side branch residues in stewartan and amylovoran exopolysaccharides and their potential role in host adaptation | Q43424777 | ||
| Bacillus sp. SXB and Pantoea sp. IMH, aerobic As(V)-reducing bacteria isolated from arsenic-contaminated soil | Q43669084 | ||
| How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity | Q43731813 | ||
| Is 16S rDNA a reliable phylogenetic marker to characterize relationships below the family level in the enterobacteriaceae? | Q43881607 | ||
| Isolation of Enterobacter cowanii from Eucalyptus showing symptoms of bacterial blight and dieback in Uruguay | Q44023916 | ||
| Phylogeny and identification of Pantoea species associated with plants, humans and the natural environment based on multilocus sequence analysis (MLSA). | Q44674886 | ||
| Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics | Q45202085 | ||
| Transfer of Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 to Pantoea gen. nov. as Pantoea agglomerans comb. nov. and Description of Pantoea dispersa sp. nov. | Q45311786 | ||
| Transfer of Erwinia ananas (synonym, Erwinia uredovora) and Erwinia stewartii to the Genus Pantoea emend. as Pantoea ananas (Serrano 1928) comb. nov. and Pantoea stewartii (Smith 1898) comb. nov., Respectively, and Description of Pantoea stewartii... | Q45312107 | ||
| Inferring ancient divergences requires genes with strong phylogenetic signals. | Q46133243 | ||
| The rooting of the universal tree of life is not reliable | Q47702896 | ||
| The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise. | Q49290554 | ||
| Biased gene transfer in microbial evolution. | Q53085305 | ||
| P433 | issue | 10 | |
| P921 | main subject | phylogenomics | Q3381973 |
| P304 | page(s) | 1287-1309 | |
| P577 | publication date | 2017-03-02 | |
| P1433 | published in | Antonie van Leeuwenhoek | Q15762938 |
| P1476 | title | Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella | |
| P478 | volume | 110 |
| Q58117643 | Bacteriophage vB_PagS_Vid5: A Low-Temperature Siphovirus That Harbors a Cluster of Genes Involved in the Biosynthesis of Archaeosine |
| Q110697275 | Bradyrhizobium altum sp. nov., Bradyrhizobium oropedii sp. nov. and Bradyrhizobium acaciae sp. nov. from South Africa show locally restricted and pantropical nodA phylogeographic patterns |
| Q55098240 | Comparative Genomics Analysis of Plasmid pPV989-94 from a Clinical Isolate of Pantoea vagans PV989. |
| Q55221394 | Complete and Assembled Genome Sequences of Pantoea calida DSM 22759T and Pantoea gaviniae DSM 22758T. |
| Q91919109 | Functional Genomics of a Symbiotic Community: Shared Traits in the Olive Fruit Fly Gut Microbiota |
| Q38659733 | Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato |
| Q57455948 | Genome sequencing and assessment of plant growth-promoting properties of a Serratia marcescens strain isolated from vermicompost |
| Q50105023 | Genome-Based Characterization of Biological Processes That Differentiate Closely Related Bacteria. |
| Q42377389 | Individual signatures and environmental factors shape skin microbiota in healthy dogs |
| Q110696331 | Phylogenomic analysis of the Erwiniaceae supports reclassification of Kalamiella piersonii to Pantoea piersonii comb. nov. and Erwinia gerundensis to the new genus Duffyella gen. nov. as Duffyella gerundensis comb. nov |
| Q64110203 | The synergistic effect of concatenation in phylogenomics: the case in |
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