| scholarly article | Q13442814 |
| P356 | DOI | 10.1128/JB.187.18.6258-6264.2005 |
| P8608 | Fatcat ID | release_c22bxwkskjbr5iqcwws2iysfcq |
| P932 | PMC publication ID | 1236649 |
| P698 | PubMed publication ID | 16159757 |
| P50 | author | James M. Tiedje | Q15995540 |
| Konstantinos T. Konstantinidis | Q60732072 | ||
| P2860 | cites work | Genome trees constructed using five different approaches suggest new major bacterial clades | Q21284133 |
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history | Q24671811 | ||
| Multiple sequence alignment with the Clustal series of programs | Q24672842 | ||
| The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy | Q24681903 | ||
| Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms | Q24685491 | ||
| Measuring genome conservation across taxa: divided strains and united kingdoms | Q24801447 | ||
| Visualization of comparative genomic analyses by BLAST score ratio | Q24808992 | ||
| Phylogenetic classification and the universal tree | Q29547749 | ||
| Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology | Q29614356 | ||
| Twilight zone of protein sequence alignments | Q29614388 | ||
| Database of homology-derived protein structures and the structural meaning of sequence alignment | Q29614393 | ||
| Genome phylogeny based on gene content | Q29617415 | ||
| Universal trees based on large combined protein sequence data sets. | Q30655328 | ||
| Critical issues in bacterial phylogeny | Q30711885 | ||
| Genomic insights that advance the species definition for prokaryotes | Q33850939 | ||
| Computing prokaryotic gene ubiquity: rescuing the core from extinction | Q33983466 | ||
| Phylogenetics and the cohesion of bacterial genomes | Q34220940 | ||
| Lateral gene transfer: when will adolescence end? | Q35583479 | ||
| Whole genome-based phylogenetic analysis of free-living microorganisms | Q39729408 | ||
| Weighted genome trees: refinements and applications | Q40942773 | ||
| Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins | Q45416041 | ||
| Use of the genomic signature in bacterial classification and identification | Q46602997 | ||
| Phylogenetic analysis based on genome-scale metabolic pathway reaction content. | Q51661930 | ||
| P433 | issue | 18 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | prokaryotes | Q19081 |
| P304 | page(s) | 6258-6264 | |
| P577 | publication date | 2005-09-01 | |
| P1433 | published in | Journal of Bacteriology | Q478419 |
| P1476 | title | Towards a genome-based taxonomy for prokaryotes | |
| P478 | volume | 187 |
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| Q116673382 | Methanocaldococcus lauensis sp. nov., a novel deep-sea hydrothermal vent hyperthermophilic methanogen |
| Q34243653 | Methanocella conradii sp. nov., a thermophilic, obligate hydrogenotrophic methanogen, isolated from Chinese rice field soil |
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| Q118110288 | Microbulbifer zhoushanensis sp. nov., Microbulbifer sediminum sp. nov. and Microbulbifer guangxiensis sp. nov., three marine bacteria isolated from a tidal flat |
| Q46261366 | Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits. |
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| Q61797507 | Mixing of meteoric and geothermal fluids supports hyperdiverse chemosynthetic hydrothermal communities |
| Q34072164 | Molecular musings in microbial ecology and evolution |
| Q116816795 | Mucilaginibacter rivuli sp. nov., isolated from a water rivulet |
| Q33926007 | Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus. |
| Q35109643 | MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences |
| Q110951387 | Mycoplasma miroungirhinis sp. nov. and Mycoplasma miroungigenitalium sp. nov., isolated from northern elephant seals (Mirounga angustirostris), Mycoplasma phocoenae sp. nov., isolated from harbour porpoise (Phocoena phocoena), and Mycoplasma… |
| Q110696335 | Mycoplasma tauri sp. nov. isolated from the bovine genital tract |
| Q89966095 | NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis |
| Q110696304 | Neglectibacter timonensis gen. nov., sp. nov. and Scatolibacter rhodanostii gen. nov., sp. nov., two anaerobic bacteria isolated from human stool samples |
| Q110696346 | Neobacillus paridis sp. nov., an endophyte of Paris polyphylla Smith var. yunnanensis |
| Q116816563 | Neobacillus rhizosphaerae sp. nov., isolated from the rhizosphere, and reclassification of Bacillus dielmonensis as Neobacillus dielmonensis comb. nov. |
| Q90050466 | New Halonotius Species Provide Genomics-Based Insights Into Cobalamin Synthesis in Haloarchaea |
| Q28763948 | New metrics for comparative genomics |
| Q21090668 | New rRNA gene-based phylogenies of the Alphaproteobacteria provide perspective on major groups, mitochondrial ancestry and phylogenetic instability |
| Q30831019 | Next-generation systematics: An innovative approach to resolve the structure of complex prokaryotic taxa |
| Q90894026 | Niche-directed evolution modulates genome architecture in freshwater Planctomycetes |
| Q38645596 | Novel Pelagic Iron-Oxidizing Zetaproteobacteria from the Chesapeake Bay Oxic-Anoxic Transition Zone |
| Q36685765 | Novel, Deep-Branching Heterotrophic Bacterial Populations Recovered from Thermal Spring Metagenomes |
| Q28109469 | Oenococcus alcoholitolerans sp. nov., a lactic acid bacteria isolated from cachaça and ethanol fermentation processes |
| Q26830951 | Ordering microbial diversity into ecologically and genetically cohesive units |
| Q37661752 | POGO-DB--a database of pairwise-comparisons of genomes and conserved orthologous genes |
| Q110951173 | Pelovirga terrestris gen. nov., sp. nov., anaerobic, alkaliphilic, fumarate-, arsenate-, Fe(III)- and sulfur-reducing bacterium isolated from a terrestrial mud volcano |
| Q30836550 | Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil |
| Q52337707 | Phylogenetic MLSA and phenotypic analysis identification of three probable novel Pseudomonas species isolated on King George Island, South Shetland, Antarctica. |
| Q64941113 | Phylogenetic conservation of bacterial responses to soil nitrogen addition across continents. |
| Q90571796 | Phylogenetic conservation of soil bacterial responses to simulated global changes |
| Q60947094 | Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order ) Calls for the Reclassification of Members at the Genus and Species Levels |
| Q89748198 | Phylogenomic analysis of novel Diaforarchaea is consistent with sulfite but not sulfate reduction in volcanic environments on early Earth |
| Q110696331 | Phylogenomic analysis of the Erwiniaceae supports reclassification of Kalamiella piersonii to Pantoea piersonii comb. nov. and Erwinia gerundensis to the new genus Duffyella gen. nov. as Duffyella gerundensis comb. nov |
| Q111741841 | Phylogenomic and comparative analyses support the reclassification of several Komagataeibacter species as novel members of the Novacetimonas gen. nov. and bring new insights into the evolution of cellulose synthase genes |
| Q38751277 | Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella. |
| Q35659660 | Phylogenomics and systematics in Pseudomonas. |
| Q35334293 | Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis |
| Q118110063 | Phylogeny and structural insights of lipase from Halopseudomonas maritima sp. nov., isolated from sea sand |
| Q100431715 | Phylogeny resolved, metabolism revealed: functional radiation within a widespread and divergent clade of sponge symbionts |
| Q28475780 | Polyphasic taxonomic analysis establishes Mycobacterium indicus pranii as a distinct species |
| Q60310879 | Poplar phyllosphere harbors disparate isoprene-degrading bacteria |
| Q33294716 | Predicting prokaryotic ecological niches using genome sequence analysis |
| Q37010628 | Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean |
| Q34083461 | Prokaryotic systematics in the genomics era. |
| Q36060620 | Proposal of fifteen new species of Parasynechococcus based on genomic, physiological and ecological features |
| Q33232053 | Protecting sausages with bacteria instead of salt |
| Q28534743 | Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass |
| Q28607295 | Proteomic-based biotyping reveals hidden diversity within a microalgae culture collection: An example using Dunaliella |
| Q110696451 | Pseudaestuariivita rosea sp. nov., isolated from Acmaea sp., a marine mollusk |
| Q110697085 | Pseudarthrobacter albicanus sp. nov., isolated from Antarctic soil |
| Q116498204 | Pseudarthrobacter humi sp. nov., an actinobacterium isolated from soil |
| Q111741910 | Pseudemcibacter aquimaris gen. nov., sp. nov., isolated from an aquaculture farm |
| Q116673384 | Pseudomonas paralcaligenes sp. nov., isolated from a hospitalized patient |
| Q116816608 | Psychroflexus curvus sp. nov., Psychroflexus longus sp. nov. and Psychroflexus montanilacus sp. nov., isolated from salt lakes on the Tibetan Plateau |
| Q114765405 | Quadrisphaera setariae sp. nov., polyphosphate-accumulating bacterium occurring as tetrad or aggregate cocci and isolated from Setaria viridis |
| Q31161352 | Reassessment of the taxonomic position of Burkholderia andropogonis and description of Robbsia andropogonis gen. nov., comb. nov. |
| Q36320324 | Reconciliation between operational taxonomic units and species boundaries |
| Q43594304 | Regulation of proteorhodopsin gene expression by nutrient limitation in the marine bacterium Vibrio sp. AND4. |
| Q57490908 | Revisiting the Taxonomic Status of the Biomedically and Industrially Important Genus , Using a Phylogenomic Approach |
| Q118110055 | Rheinheimera faecalis sp. nov., isolated from Ceratotherium simum feces |
| Q111741845 | Rhizorhabdus phycosphaerae sp. nov., isolated from the phycosphere of Microcystis aeruginosa |
| Q89494711 | Robust Demarcation of the Family Caryophanaceae (Planococcaceae) and Its Different Genera Including Three Novel Genera Based on Phylogenomics and Highly Specific Molecular Signatures |
| Q110693607 | Roseitranquillus sediminis gen. nov., sp. nov. a novel genus and species of the family Rhodobacteraceae, isolated from sediment of an Arctic fjord |
| Q110696388 | Roseococcus microcysteis sp. nov., isolated from a Microcystis aeruginosa culture sample |
| Q51703260 | SAR increases fitness of Arabidopsis thaliana in the presence of natural bacterial pathogens. |
| Q44883483 | SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences |
| Q110951390 | Salsipaludibacter albus gen. nov., sp. nov., a novel actinobacterial strain isolate from a Portuguese solar saltern and proposal of Salsipaludibacteraceae fam. nov. and Salsipaludibacterales ord. nov. |
| Q116817115 | Sediminibacillus dalangtanensis sp. nov., a moderate halophile isolated from hypersaline sediments of the Qaidam Basin in Northwest China |
| Q35628305 | Similarity-based codes sequentially assigned to ebolavirus genomes are informative of species membership, associated outbreaks, and transmission chains |
| Q97521084 | Single-Cell Genomics of Novel Actinobacteria With the Wood-Ljungdahl Pathway Discovered in a Serpentinizing System |
| Q118110246 | Sphaerisporangium perillae sp. nov., isolated from the root of Perilla frutescens (Linn.) Britt |
| Q116816588 | Sphingomicrobium nitratireducens sp. nov., isolated from a tidal flat in Guangxi |
| Q118110285 | Spirosoma oryzicola sp. nov., isolated from dried rice husk |
| Q111741704 | Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii) |
| Q24675858 | Stepping stones towards a new prokaryotic taxonomy |
| Q28275390 | Streamlining and core genome conservation among highly divergent members of the SAR11 clade |
| Q37237055 | Streptococcal taxonomy based on genome sequence analyses |
| Q111741773 | Streptomyces sennicomposti sp. nov., an actinomycete isolated from compost of Senna siamea (Lam.) |
| Q47715055 | Stress and stability: applying the Anna Karenina principle to animal microbiomes. |
| Q116816562 | Sulfitobacter albidus sp. nov., isolated from marine sediment of Jeju Island |
| Q64053789 | TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy |
| Q89848451 | Taxonomically Characterized and Validated Bacterial Species Based on 16S rRNA Gene Sequences from India During the Last Decade |
| Q92494150 | Temporal Analysis of the Microbial Community from the Crystallizer Ponds in Cabo Rojo, Puerto Rico, Using Metagenomics |
| Q55518806 | The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level. |
| Q24678865 | The bacterial species dilemma and the genomic-phylogenetic species concept |
| Q36025889 | The chimeric genome of Sphaerochaeta: nonspiral spirochetes that break with the prevalent dogma in spirochete biology |
| Q21134951 | The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes |
| Q33945713 | The expanded diversity of methylophilaceae from Lake Washington through cultivation and genomic sequencing of novel ecotypes |
| Q37635410 | The first complete genome sequences of the acI lineage, the most abundant freshwater Actinobacteria, obtained by whole-genome-amplification of dilution-to-extinction cultures. |
| Q47930590 | The genome analysis of Oleiphilus messinensis ME102 (DSM 13489T) reveals backgrounds of its obligate alkane-devouring marine lifestyle. |
| Q43977153 | The impact of HGT on phylogenomic reconstruction methods |
| Q110951393 | The phylogeny of the genus Azohydromonas supports its transfer to the family Comamonadaceae |
| Q111742391 | Thiosulfatihalobacter marinus gen. nov. sp. nov., a novel member of the family Roseobacteraceae, isolated from the West Pacific Ocean |
| Q35129964 | Toward a more robust assessment of intraspecies diversity, using fewer genetic markers |
| Q34023960 | Toward an efficient method of identifying core genes for evolutionary and functional microbial phylogenies |
| Q34034968 | Towards a taxonomy of Bacteria and Archaea based on interactive and cumulative data repositories |
| Q41327457 | Tracing lifestyle adaptation in prokaryotic genomes |
| Q92153403 | Tracking of Intentionally Inoculated Lactic Acid Bacteria Strains in Yogurt and Probiotic Powder |
| Q35757639 | Two Rapidly Growing Mycobacterial Species Isolated from a Brain Abscess: First Whole-Genome Sequences of Mycobacterium immunogenum and Mycobacterium llatzerense |
| Q111742056 | Two new Rhizobiales species isolated from root nodules of common sainfoin ( Onobrychis viciifolia ) show different plant colonization strategies |
| Q38668219 | Uncultivated microbes in need of their own taxonomy. |
| Q95839962 | Understanding the metabolism of the tetralin degrader Sphingopyxis granuli strain TFA through genome-scale metabolic modelling |
| Q42186023 | Updating prokaryotic taxonomy |
| Q118110255 | Vagococcus luciliae sp. nov., isolated from the common green bottle fly Lucilia sericata |
| Q30819892 | Vibrio madracius sp. nov. isolated from Madracis decactis (Scleractinia) in St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil |
| Q58805113 | Whole Genome Analyses Suggests that sensu lato Contains Two Additional Novel Genera ( gen. nov., and gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the |
| Q31144429 | Whole-Genome Relationships among Francisella Bacteria of Diverse Origins Define New Species and Provide Specific Regions for Detection |
| Q90668499 | Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach |
| Q116673363 | Zunongwangia pacifica sp. nov., isolated from surface seawater of the Western Pacific Ocean |
| Q43790279 | rpoB gene as a novel molecular marker to infer phylogeny in Planctomycetales. |
| Q64240486 | sp. nov., a succinate-producing bacterium isolated from human stool from an obese patient after bariatric surgery |
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