Complete Genome Analysis of Thermus parvatiensis and Comparative Genomics of Thermus spp. Provide Insights into Genetic Variability and Evolution of Natural Competence as Strategic Survival Attributes

scientific article published on 27 July 2017

Complete Genome Analysis of Thermus parvatiensis and Comparative Genomics of Thermus spp. Provide Insights into Genetic Variability and Evolution of Natural Competence as Strategic Survival Attributes is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.3389/FMICB.2017.01410
P932PMC publication ID5529391
P698PubMed publication ID28798737

P50authorCharu TripathiQ86882773
P2093author name stringKomal Kamra
Rup Lal
Harshita Mishra
Himani Khurana
Ram K Negi
Vatsala Dwivedi
P2860cites workWebMGA: a customizable web server for fast metagenomic sequence analysisQ21093386
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Metagenomic islands of hyperhalophiles: the case of Salinibacter ruberQ21283745
CRISPR Provides Acquired Resistance Against Viruses in ProkaryotesQ21508827
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"Q22066389
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Thermus aquaticus gen. n. and sp. n., a nonsporulating extreme thermophileQ24648237
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RNAmmer: consistent and rapid annotation of ribosomal RNA genesQ24675768
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General enzymatic screens identify three new nucleotidases in Escherichia coli. Biochemical characterization of SurE, YfbR, and YjjG.Q45110853
Thermus filiformis sp. nov., a Filamentous Caldoactive BacteriumQ45311498
Transfer of Thermus ruber (Loginova et al. 1984), Thermus silvanus (Tenreiro et al. 1995), and Thermus chliarophilus (Tenreiro et al. 1995) to Meiothermus gen. nov. as Meiothermus ruber comb. nov., Meiothermus silvanus comb. nov., and Meiothermus ...Q45312657
Aerobic Cr(VI) reduction by Thermus scotoductus strain SA-01.Q46639879
The role of single subunits of the DNA transport machinery of Thermus thermophilus HB27 in DNA binding and transportQ47934562
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Purification of Thermus aquaticus DNA polymerase expressed in Escherichia coli.Q54705637
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CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNAQ29615786
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elementsQ29615788
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangementQ29616598
Shifting the genomic gold standard for the prokaryotic species definitionQ29616599
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing dataQ30080007
Thermus igniterrae sp. nov. and Thermus antranikianii sp. nov., two new species from IcelandQ30596712
Thermus caliditerrae sp. nov., a novel thermophilic species isolated from a geothermal areaQ30683929
Thermus parvatiensis RL(T) sp. nov., Isolated from a Hot Water Spring, Located Atop the Himalayan Ranges at Manikaran, IndiaQ31019003
Evolution after gene duplication: models, mechanisms, sequences, systems, and organismsQ33250026
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Molecular analyses of the natural transformation machinery and identification of pilus structures in the extremely thermophilic bacterium Thermus thermophilus strain HB27.Q34100377
Inferring bacterial genome flux while considering truncated genesQ34120998
Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblageQ34171085
Persisting viral sequences shape microbial CRISPR-based immunityQ34244876
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Analysis of genomic rearrangements, horizontal gene transfer and role of plasmids in the evolution of industrial important Thermus species.Q34271267
Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programsQ34279044
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbesQ34363801
Comparative metagenomics of toxic freshwater cyanobacteria bloom communities on two continentsQ34406047
Thermus amyloliquefaciens sp. nov., isolated from a hot spring sediment sampleQ34474028
Peptide methionine sulfoxide reductase: structure, mechanism of action, and biological functionQ34497879
BPGA- an ultra-fast pan-genome analysis pipelineQ34521907
Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islandsQ34546996
Purification of a thermostable DNA polymerase from Thermus thermophilus HB8, useful in the polymerase chain reactionQ34634981
Estimating maximum likelihood phylogenies with PhyML.Q34976656
PHAST: a fast phage search toolQ35075734
The MerR family of transcriptional regulators.Q35164005
Genomic and proteomic characterization of the large Myoviridae bacteriophage ϕTMA of the extreme thermophile Thermus thermophilusQ35577859
Arsenic rich Himalayan hot spring metagenomics reveal genetically novel predator-prey genotypesQ35624883
Comprehensive Functional Analysis of the 18 Vibrio cholerae N16961 Toxin-Antitoxin Systems Substantiates Their Role in Stabilizing the Superintegron.Q35682366
Functional characterization of Crp/Fnr-type global transcriptional regulators in Desulfovibrio vulgaris HildenboroughQ35739279
The bacterial pangenome as a new tool for analysing pathogenic bacteriaQ36004904
Not all predicted CRISPR-Cas systems are equal: isolated cas genes and classes of CRISPR like elements.Q36271931
Bacterial histidine kinase as signal sensor and transducer.Q36293885
Members of the IclR family of bacterial transcriptional regulators function as activators and/or repressorsQ36393878
Viral diversity threshold for adaptive immunity in prokaryotesQ36454957
Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomesQ36509481
High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathwayQ36625677
High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, ChinaQ36851377
Growth temperature and genome size in bacteria are negatively correlated, suggesting genomic streamlining during thermal adaptationQ36905240
Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cyclingQ37151309
PHASTER: a better, faster version of the PHAST phage search toolQ37182130
Shuffling genes around in hot environments: the unique DNA transporter of Thermus thermophilusQ37389798
Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transferQ39319547
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparisonQ39784985
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis.Q41282214
The Thermus thermophilus comEA/comEC operon is associated with DNA binding and regulation of the DNA translocator and type IV pili.Q41332254
Structure and mechanism of the PilF DNA transformation ATPase from Thermus thermophilusQ41915233
Tablet--next generation sequence assembly visualizationQ42144683
Complete genome sequence of the thermophilic bacterium Thermus sp. strain CCB_US3_UF1.Q42279847
Draft genome sequence of Thermus sp. strain RL, isolated from a hot water spring located atop the Himalayan ranges at Manikaran, IndiaQ42323283
Structure and function of PilQ, a secretin of the DNA transporter from the thermophilic bacterium Thermus thermophilus HB27.Q42700530
Comparative genomics of Thermus thermophilus: Plasticity of the megaplasmid and its contribution to a thermophilic lifestyleQ43020360
Identification and characterization of a unique, zinc-containing transport ATPase essential for natural transformation in Thermus thermophilus HB27.Q43030104
The third plasmid pVV8 from Thermus thermophilus HB8: isolation, characterization, and sequence determinationQ43034025
A rapid polymerase-chain-reaction-directed sequencing strategy using a thermostable DNA polymerase from Thermus flavusQ44556296
P4510describes a project that usesMUMmerQ6719063
P921main subjectgenomicsQ222046
comparative genomicsQ1147112
whole genome sequencingQ2068526
P304page(s)1410
P577publication date2017-07-27
P1433published inFrontiers in MicrobiologyQ27723481
P1476titleComplete Genome Analysis of Thermus parvatiensis and Comparative Genomics of Thermus spp. Provide Insights into Genetic Variability and Evolution of Natural Competence as Strategic Survival Attributes
P478volume8

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cites work (P2860)
Q57091360Biogeography and taxonomic overview of terrestrial hot spring thermophilic phages
Q57148953Comparative genome analysis provides deep insights into Aeromonas hydrophila taxonomy and virulence-related factors
Q90316715Complete Genome Sequencing of Thermus thermophilus Strain HC11, Isolated from Mine Geyser in Japan
Q94471889Complete genome sequencing and comparative genomic analyses of Bacillus sp. S3, a novel hyper Sb(III)-oxidizing bacterium
Q116816760Description of five novel thermophilic species of the genus Thermus: Thermus hydrothermalis sp. nov., Thermus neutrinimicus sp. nov., Thermus thalpophilus sp. nov., Thermus albus sp. nov., and Thermus altitudinis sp. nov., isolated from hot spring…
Q38613060Microbial taxonomy in the era of OMICS: application of DNA sequences, computational tools and techniques.
Q89848451Taxonomically Characterized and Validated Bacterial Species Based on 16S rRNA Gene Sequences from India During the Last Decade

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