PHASTER: a better, faster version of the PHAST phage search tool (scientific article published on 03 May 2016)

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Q61446253	Comparative analysis reveals the Genomic Islands in Pasteurella multocida population genetics: on Symbiosis and adaptability
Q104736157	Comparative and Functional Analyses of Two Sequenced Paenibacillus polymyxa Genomes Provides Insights Into Their Potential Genes Related to Plant Growth-Promoting Features and Biocontrol Mechanisms
Q93235993	Comparative genetic and physiological characterisation of Pectinatus species reveals shared tolerance to beer-associated stressors but halotolerance specific to pickle-associated strains
Q49354154	Comparative genome analysis and characterization of the Salmonella Typhimurium strain CCRJ_26 isolated from swine carcasses using whole genome sequencing approach.
Q112305196	Comparative genome analysis of Bacillus thuringiensis strain HD521 and HS18-1
Q112717996	Comparative genome analysis of Salmonella enterica serovar Gallinarum biovars Pullorum and Gallinarum decodes strain specific genes
Q40479417	Comparative genome analysis of fish pathogen Flavobacterium columnare reveals extensive sequence diversity within the species.
Q58765736	Comparative genome analysis reveals key genetic factors associated with probiotic property in Enterococcus faecium strains
Q33786619	Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853
Q112715161	Comparative genome characterization of Leptospira interrogans from mild and severe leptospirosis patients
Q95834855	Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica
Q47145757	Comparative genomic analysis of Brevibacterium strains: insights into key genetic determinants involved in adaptation to the cheese habitat
Q89572235	Comparative genomic analysis of Enterococcus faecalis: insights into their environmental adaptations
Q58736812	Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer
Q98512735	Comparative genomic analysis of a Shiga toxin-producing Escherichia coli (STEC) O145:H25 associated with a severe pediatric case of hemolytic uremic syndrome in Davidson County, Tennessee, US
Q55100890	Comparative genomic analysis of a naturally competent Elizabethkingia anophelis isolated from an eye infection.
Q90049151	Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005-2017
Q55007884	Comparative genomic and metabolic analysis of three Lactobacillus paracasei cheese isolates reveals considerable genomic differences in strains from the same niche.
Q58085053	Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates
Q115653634	Comparative genomic and phenotypic analyses of the virulence potential in Shiga toxin-producing Escherichia coli O121:H7 and O121:H10
Q121237500	Comparative genomic assessment of members of genus Tenacibaculum: an exploratory study
Q97677142	Comparative genomic insights into Yersinia hibernica - a commonly misidentified Yersinia enterocolitica-like organism
Q114177842	Comparative genomics and antibiotic resistance of Yersinia enterocolitica obtained from a pork production chain and human clinical cases in Brazil
Q91960091	Comparative genomics groups phages of Negativicutes and classical Firmicutes despite different Gram-staining properties
Q91570135	Comparative genomics in infectious disease
Q93213319	Comparative genomics inferred two distinct populations of piscine pathogenic Streptococcus agalactiae, serotype Ia ST7 and serotype III ST283, in Thailand and Vietnam
Q92982540	Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally
Q90385812	Comparative genomics of Lactobacillus curvatus enables prediction of traits relating to adaptation and strategies of assertiveness in sausage fermentation
Q92071286	Comparative genomics of Lactobacillus sakei supports the development of starter strain combinations
Q117717816	Comparative genomics of MRSA strains from human and canine origins reveals similar virulence gene repertoire
Q92870833	Comparative genomics of Mycobacterium mucogenicum and Mycobacterium neoaurum clade members emphasizing tRNA and non-coding RNA
Q113877366	Comparative genomics of Photobacterium species from terrestrial and marine habitats
Q88567541	Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium)
Q64136872	Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association
Q120682174	Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
Q57799883	Comparative genomics of clinical strains of Pseudomonas aeruginosa strains isolated from different geographic sites
Q55027334	Comparative genomics of cocci-shaped Sporosarcina strains with diverse spatial isolation.
Q46304328	Comparative genomics of four Mycoplasma species of the human urogenital tract: Analysis of their core genomes and virulence genes
Q48772010	Comparative genomics of free-living Gammaproteobacteria: pathogenesis-related genes or interaction-related genes?
Q90155470	Comparative genomics of global optrA-carrying Enterococcus faecalis uncovers a common chromosomal hotspot for optrA acquisition within a diversity of core and accessory genomes
Q98939497	Comparative genomics of ocular Pseudomonas aeruginosa strains from keratitis patients with different clinical outcomes
Q58546778	Comparative genomics of the Komagataeibacter strains-Efficient bionanocellulose producers
Q89932736	Comparative genomics of the fish pathogens Edwardsiella ictaluri 93-146 and Edwardsiella piscicida C07-087
Q89937914	Comparative genomics of vancomycin-resistant Enterococcus spp. revealed common resistome determinants from hospital wastewater to aquatic environments
Q94544807	Comparative genomics of whole-cell pertussis vaccine strains from India
Q48123982	Comparative genomics reveals differences in mobile virulence genes of Escherichia coli O103 pathotypes of bovine fecal origin
Q64113094	Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7
Q92059342	Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs)
Q104611708	Comparative genomics with a multidrug-resistant Klebsiella pneumoniae isolate reveals the panorama of unexplored diversity in Northeast Brazil
Q57094214	Comparison between complete genomes of an isolate of Pseudomonas syringae pv. actinidiae from Japan and a New Zealand isolate of the pandemic lineage
Q95930367	Comparison of Antimicrobial Resistance and Pan-Genome of Clinical and Non-Clinical Enterococcus cecorum from Poultry Using Whole-Genome Sequencing
Q89889609	Comparison of Shiga toxin-encoding bacteriophages in highly pathogenic strains of Shiga toxin-producing Escherichia coli O157:H7 in the UK
Q51784012	Comparison of advanced whole genome sequence-based methods to distinguish strains of Salmonella enterica serovar Heidelberg involved in foodborne outbreaks in Québec.
Q38629487	Complete Genome Analysis of Thermus parvatiensis and Comparative Genomics of Thermus spp. Provide Insights into Genetic Variability and Evolution of Natural Competence as Strategic Survival Attributes
Q97087840	Complete Genome Sequence and Carbohydrates-Active EnZymes (CAZymes) Analysis of Lactobacillus paracasei DTA72, a Potential Probiotic Strain with Strong Capability to Use Inulin
Q108593324	Complete Genome Sequence and Comparative Analysis of Synechococcus sp. CS-601 (SynAce01), a Cold-Adapted Cyanobacterium from an Oligotrophic Antarctic Habitat
Q60921590	Complete Genome Sequence and Comparative Analysis of sp. CS-601 (SynAce01), a Cold-Adapted Cyanobacterium from an Oligotrophic Antarctic Habitat
Q50279383	Complete Genome Sequence and Genomic Characterization of Lactobacillus acidophilus LA1 (11869BP).
Q112304411	Complete Genome Sequence of Weissella confusa LM1 and Comparative Genomic Analysis
Q90638388	Complete Genome Sequence of A388, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 1 Isolate from Greece
Q61444046	Complete Genome Sequence of BT305, Isolated from the Small Intestine of Castrated Beef Cattle
Q47158877	Complete Genome Sequence of Bacillus cereus C1L, a Plant Growth-Promoting Rhizobacterium from the Rhizosphere of Formosa Lily in Taiwan
Q89183889	Complete Genome Sequence of Bacillus sp. SJ-10 (KCCM 90078) Producing 400-kDa Poly-γ-glutamic Acid
Q40479874	Complete Genome Sequence of Brevibacterium linens SMQ-1335.
Q55365821	Complete Genome Sequence of Broad-Host-Range Shiga Toxin-Converting Bacteriophage SH2026Stx1, Isolated from Escherichia coli O157:H7.
Q47172128	Complete Genome Sequence of Enterococcus thailandicus Strain a523 Isolated from Urban Raw Sewage
Q115673688	Complete Genome Sequence of Escherichia coli Strain FEX669, a ColV Plasmid-Containing Isolate from Retail Chicken Meat
Q48257803	Complete Genome Sequence of Escherichia coli Strain WG5.
Q64120511	Complete Genome Sequence of Fusobacterium necrophorum subsp. ATCC 25286
Q37299226	Complete Genome Sequence of Gordonia terrae 3612.
Q60912663	Complete Genome Sequence of Hypervirulent Streptococcus pyogenes3 Strain 1838
Q59803246	Complete Genome Sequence of Lactococcus lactis subsp Strain 14B4, Which Inhibits the Growth of Salmonella enterica Serotype Poona
Q55250271	Complete Genome Sequence of Melissococcus plutonius DAT561, a Strain That Shows an Unusual Growth Profile, Obtained by PacBio Sequencing.
Q61805358	Complete Genome Sequence of Microbacterium foliorum NRRL B-24224, a Host for Bacteriophage Discovery
Q91785887	Complete Genome Sequence of Moraxella osloensis Strain YV1, Isolated from an Australian Wastewater Treatment Plant
Q104687765	Complete Genome Sequence of Ovine Mycobacterium avium subsp. paratuberculosis Strain JIII-386 (MAP-S/type III) and Its Comparison to MAP-S/type I, MAP-C, and M. avium Complex Genomes
Q90638361	Complete Genome Sequence of Pseudomonas aeruginosa Reference Strain PAK
Q96684481	Complete Genome Sequence of Pseudomonas aeruginosa Strain AA2 (LMG 27630), an Early Isolate Recovered from the Airway of a German Cystic Fibrosis Patient
Q47140479	Complete Genome Sequence of Salmonella enterica subsp. enterica serovar Minnesota Strain
Q52576523	Complete Genome Sequence of Shewanella sp. WE21, a Rare Isolate with Multiple Novel Large Genomic Islands.
Q54959773	Complete Genome Sequence of Sinorhizobium meliloti Bacteriophage HMSP1-Susan.
Q98575214	Complete Genome Sequence of Sulfitobacter Phage ϕGT1, Isolated from a Tidal Flat
Q119498916	Complete Genome Sequence of Two Deep-Sea Isolates from Madeira Archipelago and Evaluation of Their Biosynthetic Potential
Q61444093	Complete Genome Sequence of Vibrio campbellii DS40M4
Q59791212	Complete Genome Sequence of WM99c, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 2 (GC2) Strain Representing an Australian GC2 Lineage
Q92511022	Complete Genome Sequence of Weissella hellenica 0916-4-2 and Its Comparative Genomic Analysis
Q89453612	Complete Genome Sequence of XaF13, a Novel Bacteriophage of Xanthomonas vesicatoria from Mexico
Q91997568	Complete Genome Sequence of Xanthomonas vesicatoria Bacteriophage ΦXaF18, a Contribution to the Biocontrol of Bacterial Spot of Pepper in Mexico
Q112720498	Complete Genome Sequence of a Canadian Strain of Raoultella planticola with Metal and Antimicrobial Resistance Genes
Q55158261	Complete Genome Sequence of a Natural Escherichia coli O145:H11 Isolate That Belongs to Phylogroup A.
Q47146408	Complete Genome Sequence of a Psychrotolerant Denitrifying Bacterium, Janthinobacterium svalbardensis PAMC 27463.
Q41117931	Complete Genome Sequence of a Shiga Toxin-Producing Enterobacter cloacae Clinical Isolate
Q49681291	Complete Genome Sequence of an Escherichia coli O121:H19 Strain from an Outbreak in Canada Associated with Flour.
Q40107452	Complete Genome Sequence of blaCTX-M-27-Encoding Escherichia coli Strain H105 of Sequence Type 131 Lineage C1/H30R.
Q90453957	Complete Genome Sequence of the Biocontrol Agent Bacillus velezensis UFLA258 and Its Comparison with Related Species: Diversity within the Commons
Q112749008	Complete Genome Sequence of the Newly Developed Lactobacillus acidophilus Strain With Improved Thermal Adaptability
Q48216232	Complete Genome Sequence of the Type Strain of Macrococcus canis
Q63246512	Complete Genome Sequence of the Wolbachia wAlbB Endosymbiont of Aedes albopictus
Q89926044	Complete Genome Sequences of Pseudomonas alkylphenolica Neo and Variovorax sp. Strain CSUSB, Obtained in Undergraduate Microbiology Courses Using a Hybrid Assembly Approach
Q112715062	Complete Genome Sequences of Six Salmonella enterica Strains (S. enterica subsp. arizonae, S. enterica subsp. diarizonae, and S. enterica subsp. salamae) Isolated from Poultry Houses
Q55412112	Complete Genome Sequences of Three Bacillus amyloliquefaciens Strains That Inhibit the Growth of Listeria monocytogenes In Vitro.
Q54202784	Complete Genome Sequences of Two Atypical Enteropathogenic Escherichia coli O145 Environmental Strains.
Q55258658	Complete Genome Sequences of Two Bioluminescent Vibrio campbellii Strains Isolated from Biofouling Communities in the Bay of Bengal.
Q64281417	Complete Genome Sequences of Two Melissococcus plutonius Strains with Different Virulence Profiles, Obtained by PacBio Sequencing
Q42205421	Complete Genome Sequences of Two Phage-Like Plasmids Carrying the CTX-M-15 Extended-Spectrum β-Lactamase Gene
Q100414726	Complete Genome Sequences of Two Salmonella enterica Lytic Phages, NBSal006 and NBSal007
Q91735168	Complete Genome Sequences of Two Salmonella enterica subsp. enterica Serovar Anatum Strains Isolated from Papaya
Q91172315	Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains Isolated from Crows
Q41688762	Complete Genome Sequences of emm111 Type Streptococcus pyogenes Strain GUR, with Antitumor Activity, and Its Derivative Strain GURSA1 with an Inactivated emm Gene
Q91785975	Complete Genome Sequences of the Human Pathogen Paenibacillus thiaminolyticus Mbale and Type Strain P. thiaminolyticus NRRL B-4156
Q97891404	Complete Genome Sequencing Provides Novel Insight into the Virulence Repertories and Phylogenetic Position of Dry Beans Pathogen Curtobacterium flaccumfaciens pv. flaccumfaciens
Q98386192	Complete Genome and Comparative Genome Analysis of Lactobacillus reuteri YSJL-12, a Potential Probiotics Strain Isolated From Healthy Sow Fresh Feces
Q89976829	Complete Genome and Plasmids Sequences of a Clinical Proteus mirabilis Isolate Producing Plasmid Mediated NDM-1 from Italy
Q97550913	Complete Genome of Roseobacter ponti DSM 106830T
Q98466540	Complete Genomic Analysis of Enterococcus faecium Heat-Resistant Strain Developed by Two-Step Adaptation Laboratory Evolution Method
Q101575407	Complete Genomic Analysis of VRE From a Cattle Feedlot: Focus on 2 Antibiotic Resistance
Q90689241	Complete Genomic Sequences of Three Salmonella enterica subsp. enterica Serovar Muenchen Strains from an Orchard in San Joaquin County, California
Q45920538	Complete Genomic Sequences of Two Salmonella enterica subsp. enterica Serogroup C2 (O:6,8) Strains from Central California.
Q112303134	Complete de novo assembly of Wolbachia endosymbiont of Diaphorina citri Kuwayama (Hemiptera: Liviidae) using long-read genome sequencing
Q92884706	Complete genome analysis of a novel temperate bacteriophage induced from Corynebacterium striatum
Q96615996	Complete genome of Polaromonas vacuolata KCTC 22033T isolated from beneath Antarctic Sea ice
Q47194961	Complete genome of a novel virulent phage ST0 lysing Escherichia coli H8.
Q89629540	Complete genome sequence analysis of the Vibrio owensii strain SH-14 isolated from shrimp with acute hepatopancreatic necrosis disease
Q92529950	Complete genome sequence analysis of the thermoacidophilic verrucomicrobial methanotroph "Candidatus Methylacidiphilum kamchatkense" strain Kam1 and comparison with its closest relatives
Q92339479	Complete genome sequence and characterization of virulence genes in Lancefield group C Streptococcus dysgalactiae isolated from farmed amberjack (Seriola dumerili)
Q57068189	Complete genome sequence of BT304, isolated from the small intestine of castrated beef cattle
Q52558794	Complete genome sequence of Bacillus velezensis QST713: a biocontrol agent that protects Agaricus bisporus crops against the green mould disease.
Q50353369	Complete genome sequence of Lactobacillus rhamnosus Pen, a probiotic component of a medicine used in prevention of antibiotic-associated diarrhoea in children.
Q89713396	Complete genome sequence of Paracoccus sp. strain AK26: Insights into multipartite genome architecture and methylotropy
Q112723096	Complete genome sequence of Photobacterium ganghwense C2.2: A new polyhydroxyalkanoate production candidate
Q91451538	Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium
Q122257993	Complete genome sequence of Vibrio gazogenes PB1: an estuarine bacterium capable of producing prodigiosin from starch or cellulose
Q52641207	Complete genome sequence of a novel virulent phage ST31 infecting Escherichia coli H21.
Q99616789	Complete genome sequence of fish-pathogenic Aeromonas hydrophila HX-3 and a comparative analysis: insights into virulence factors and quorum sensing
Q123290805	Complete genome sequence of the emerging pathogen Cysteiniphilum spp. and comparative genomic analysis with genus Francisella: Insights into its genetic diversity and potential virulence traits
Q28365038	Complete genome sequence of the salmonella enterica serovar enteritidis bacteriophages fSE1C and fSE4C isolated from food matrices
Q112696466	Complete genome sequences and genomic characterization of five plasmids harbored by environmentally persistent Cronobacter sakazakii strains ST83 H322 and ST64 GK1025B obtained from powdered infant formula manufacturing facilities
Q119487785	Complete genome sequences of Lacticaseibacillus paracasei INIA P272 (CECT 8315) and Lacticaseibacillus rhamnosus INIA P344 (CECT 8316) isolated from breast-fed infants reveal probiotic determinants
Q97568724	Complete genome sequences of Streptococcus pyogenes type strain reveal 100%-match between PacBio-solo and Illumina-Oxford Nanopore hybrid assemblies
Q49792103	Complete genome sequencing of Acinetobacter baumannii str. K50 disclosed the large conjugative plasmid pK50a encoding the carbapenemase OXA-23 and the extended-spectrum β-lactamase GES-11.
Q58608731	Complete genome sequencing of Comamonas kerstersii 8943, a causative agent for peritonitis
Q91162315	Complete hybrid genome assembly of clinical multidrug-resistant Bacteroides fragilis isolates enables comprehensive identification of antimicrobial-resistance genes and plasmids
Q89637869	Complete, closed bacterial genomes from microbiomes using nanopore sequencing
Q97635473	Completed Genomic Sequence of Bacillus thuringiensis HER1410 Reveals a Cry-Containing Chromosome, Two Megaplasmids, and an Integrative Plasmidial Prophage
Q92537924	Composition and Diversity of CRISPR-Cas13a Systems in the Genus Leptotrichia
Q112639927	Comprehensive Genomic Analysis of Marine Strain Streptomyces sp. 891, an Excellent Producer of Chrysomycin A with Therapeutic Potential
Q112292704	Comprehensive Scanning of Prophages in Lactobacillus: Distribution, Diversity, Antibiotic Resistance Genes, and Linkages with CRISPR-Cas Systems
Q91917473	Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools
Q123150623	Comprehensive analysis of the metabolic and genomic features of tannin-transforming Lactiplantibacillus plantarum strains
Q104753969	Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen
Q114075575	Computational Tools for the Analysis of Uncultivated Phage Genomes
Q97521132	Computational approaches in viral ecology
Q57169429	Construction and Characterization of Synthetic Bacterial Community for Experimental Ecology and Evolution
Q93060693	Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center
Q47552758	Corallivory and the microbial debacle in two branching scleractinians
Q124841733	Corynebacterium antarcticum sp. nov., Corynebacterium marambiense sp. nov., Corynebacterium meridianum sp. nov., and Corynebacterium pygosceleis sp. nov., isolated from Adélie penguins (Pygoscelis adeliae)
Q91636122	Crucial Role of the Accessory Genome in the Evolutionary Trajectory of Acinetobacter baumannii Global Clone 1
Q103016183	Cryptic prophages within a Streptococcus pyogenes genotype emm4 lineage
Q112578817	Crystal structure of the anti-CRISPR repressor Aca2
Q52620734	Cultivation and genomics of the first freshwater SAR11 (LD12) isolate.
Q91278269	Cultivation-Assisted Genome of Candidatus Fukatsuia symbiotica; the Enigmatic "X-Type" Symbiont of Aphids
Q110951402	Culture and genomic analysis of Arsenophonus apicola sp. nov. isolated from the honeybee Apis mellifera
Q92784543	Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota
Q49922709	Culture-facilitated Comparative Genomics of the Facultative Symbiont Hamiltonella defensa.
Q90027369	Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes
Q112701307	DBSCAN-SWA: An Integrated Tool for Rapid Prophage Detection and Annotation
Q112713270	Data on the genome of Bacillus subtilis A1- Midalam from beach soil
Q42690829	De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii.
Q112722258	De novo genome assembly and analysis unveil biosynthetic and metabolic potentials of Pseudomonas fragi A13BB
Q112277906	Deciphering Active Prophages from Metagenomes
Q112287171	Deciphering Multidrug-Resistant Acinetobacter baumannii from a Pediatric Cancer Hospital in Egypt
Q101362741	Decoding the Genomic Variability among Members of the Bifidobacterium dentium Species
Q92932870	Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes
Q55407952	Description and Comparative Genomics of Macrococcus caseolyticus subsp. hominis subsp. nov., Macrococcus goetzii sp. nov., Macrococcus epidermidis sp. nov., and Macrococcus bohemicus sp. nov., Novel Macrococci From Human Clinical Material With Virul
Q112818554	Description and functional testing of four species of the novel phototrophic genus Chioneia gen. nov., isolated from different East Antarctic environments
Q94586541	Description of Citrobacter cronae sp. nov., isolated from human rectal swabs and stool samples
Q112304712	Description, Taxonomy, and Comparative Genomics of a Novel species, Thermoleptolyngbya sichuanensis sp. nov., Isolated From Hot Springs of Ganzi, Sichuan, China
Q92538246	Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: Neisseria meningitidis as a Proof of Concept
Q100300512	Development and Application of a Prophage Integrase Typing Scheme for Group B Streptococcus
Q96130604	Development and application of a core genome multilocus sequence typing scheme for the healthcare-associated pathogen Pseudomonas aeruginosa
Q98470826	Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination
Q91116091	Dietary Fructose and Microbiota-Derived Short-Chain Fatty Acids Promote Bacteriophage Production in the Gut Symbiont Lactobacillus reuteri
Q64071180	Differential Responses of Colorectal Cancer Cell Lines to Strains Isolated from Healthy Donors and Colorectal Cancer Patients
Q92626181	Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28
Q104571305	Differential induction of Shiga toxin in environmental Escherichia coli O145:H28 strains carrying the same genotype as the outbreak strains
Q36216691	Differentiation of Staphylococcus argenteus (formerly: Staphylococcus aureus clonal complex 75) by mass spectrometry from S. aureus using the first strain isolated from a wild African great ape.
Q104138637	Diminutive, degraded but dissimilar: Wolbachia genomes from filarial nematodes do not conform to a single paradigm
Q92780949	Discovery of Paenibacillus larvae ERIC V: Phenotypic and genomic comparison to genotypes ERIC I-IV reveal different inventories of virulence factors which correlate with epidemiological prevalences of American Foulbrood
Q101409845	Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements
Q57922300	Distinct Genomic Features Characterize Two Clades of : Proposal of Subsp. Subsp. nov. and Subsp. Subsp. nov
Q112298477	Distinct clonal lineages and within-host diversification shape invasive Staphylococcus epidermidis populations
Q104102283	Distribution and Evolution of the Bacteriophage WO and Its Antagonism With Wolbachia
Q90741161	Distribution and characterization of Shiga toxin converting temperate phages carried by Shigella flexneri in Hispaniola
Q115702829	Distribution and genomic characterization of tigecycline-resistant tet(X4)-positive Escherichia coli of swine farm origin
Q104476800	Distribution of Important Probiotic Genes and Identification of the Biogenic Amines Produced by Lactobacillus acidophilus PNW3
Q98778336	Diverse enzymatic activities mediate antiviral immunity in prokaryotes
Q91687866	Diversification of Vibrio anguillarum Driven by the Bacteriophage CHOED
Q64266503	Diversity Within Urban Freshwaters
Q89529145	Diversity and Host Interactions Among Virulent and Temperate Baltic Sea Flavobacterium Phages
Q96429475	Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco
Q112281679	Diversity of Pseudomonas aeruginosa Temperate Phages
Q89621086	Diversity of Sinorhizobium (Ensifer) meliloti Bacteriophages in the Rhizosphere of Medicago marina: Myoviruses, Filamentous and N4-Like Podovirus
Q92761559	Diversity patterns of bacteriophages infecting Aggregatibacter and Haemophilus species across clades and niches
Q38367917	Domestication of Lambda Phage Genes into a Putative Third Type of Replicative Helicase Matchmaker
Q112287645	Down in the pond: Isolation and characterization of a new Serratia marcescens strain (LVF3) from the surface water near frog's lettuce (Groenlandia densa)
Q64122548	Draft Genome Sequence and Annotation of Acinetobacter junii MHI21018, Isolated from Bovine Colostrum
Q52591127	Draft Genome Sequence of Aeromonas cavernicola sp. nov. DSM 24474T, Isolated from a Cavern Brook in the Moravia Region of the Czech Republic.
Q52591128	Draft Genome Sequence of Aeromonas lusitana sp. nov. Strain DSM 24905T, Isolated from a Hot Spring in Vila-Real, Portugal.
Q55346476	Draft Genome Sequence of Bacillus paralicheniformis F47, Isolated from an Algerian Salty Lake.
Q41063074	Draft Genome Sequence of Bacillus sp. Strain CDB3, an Arsenic-Resistant Soil Bacterium Isolated from Cattle Dip Sites
Q41713613	Draft Genome Sequence of Bacillus sp. Strain K2I17, Isolated from the Rhizosphere of Deschampsia antarctica Desv.
Q41713630	Draft Genome Sequence of Chilean Antarctic Pseudomonas sp. Strain K2I15.
Q61796379	Draft Genome Sequence of Chromatium okenii Isolated from the Stratified Alpine Lake Cadagno
Q42351627	Draft Genome Sequence of Cloacibacterium normanense NRS-1 Isolated from Municipal Wastewater
Q40475958	Draft Genome Sequence of Curtobacterium sp. Strain UCD-KPL2560 (Phylum Actinobacteria).
Q95935689	Draft Genome Sequence of Enterococcus faecalis UMB7780, Isolated from the Female Urinary Tract
Q55285435	Draft Genome Sequence of Enterococcus faecium Strain J19, Isolated from Cabbage.
Q90182499	Draft Genome Sequence of Escherichia coli DSM 12242, a Highly Efficient Host Strain for the Isolation of Somatic Coliphages
Q96134548	Draft Genome Sequence of Escherichia coli UMB1353, Isolated from the Female Urinary Tract
Q96134567	Draft Genome Sequence of Escherichia coli UMB9246, Isolated from the Bladder of a Woman with Recurrent Urinary Tract Infection
Q94548018	Draft Genome Sequence of Klebsiella pneumoniae UMB7783, Isolated from the Female Bladder
Q95317954	Draft Genome Sequence of Lactobacillus mulieris UMB7784, Isolated from the Female Urinary Tract
Q94685763	Draft Genome Sequence of Lactobacillus mulieris UMB9245, Isolated from the Female Bladder
Q42248394	Draft Genome Sequence of Lactobacillus reuteri CECT8605
Q41815972	Draft Genome Sequence of Lactobacillus salivarius L28 Isolated from Ground Beef
Q41688737	Draft Genome Sequence of Listeria monocytogenes Strain ATCC 7644.
Q40097936	Draft Genome Sequence of Mycobacterium avium 11.
Q89700730	Draft Genome Sequence of Paenibacillus polymyxa 3A-25AI, a Strain Antagonist to Root Rot Causal Phytopathogens
Q92000776	Draft Genome Sequence of Paracoccus sp. Strain 228, Isolated from Surface Water of the Gulf of Gdańsk in the Baltic Sea
Q114365904	Draft Genome Sequence of Pediococcus pentosaceus Strain PP16CC, Isolated from Oyster Crassostrea corteziensis
Q59803234	Draft Genome Sequence of Probiotic Lactobacillus brevis TUCO-5E, Isolated from Porcine Milk
Q95317946	Draft Genome Sequence of Proteus mirabilis Strain UMB0038, Isolated from the Female Bladder
Q94685733	Draft Genome Sequence of Proteus mirabilis UMB1310, Isolated from the Female Urinary Tract
Q54945426	Draft Genome Sequence of Raoultella ornithinolytica Strain HH3.
Q42379992	Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhimurium Q1.
Q92571232	Draft Genome Sequence of Streptococcus suis S10, a Virulent Strain Used in Experimental Pig Infections
Q64089690	Draft Genome Sequence of a - and -Harboring Pseudomonas aeruginosa Clinical Isolate from Pakistan
Q91520491	Draft Genome Sequence of a Clostridioides difficile Sequence Type 97 Strain Belonging to Hypervirulent Clade 2
Q33781799	Draft Genome Sequence of a Sequence Type 398 Methicillin-Resistant Staphylococcus aureus Isolate from a Danish Dairy Cow with Mastitis
Q115673759	Draft Genome Sequence of a Uropathogenic Escherichia coli Sequence Type 44 Strain Carrying Multiple Antimicrobial Resistance Genes
Q64108106	Draft Genome Sequence of an Enterococcus faecalis Strain (24FS) That Was Isolated from Healthy Infant Feces and Exhibits High Antibacterial Activity, Multiple-Antibiotic Resistance, and Multiple Virulence Factors
Q96134643	Draft Genome Sequence of an Escherichia coli Sequence Type 420 Isolate from a Patient with Urinary Tract Infection in Northern California
Q46332294	Draft Genome Sequence of the Deep-Sea Bacterium Moritella sp. JT01 and Identification of Biotechnologically Relevant Genes.
Q54965169	Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Strain MS-FC-4.
Q38629493	Draft Genome Sequence of the Nitrogen-Fixing Rhizobium sullae Type Strain IS123T Focusing on the Key Genes for Symbiosis with its Host Hedysarum coronarium L.
Q91385234	Draft Genome Sequence of the Panton-Valentine Leucocidin-Producing Staphylococcus aureus Sequence Type 154 Strain NRL 08/001, Isolated from a Fatal Case of Necrotizing Pneumonia
Q99564676	Draft Genome Sequences of 12 Shiga Toxin-Producing Escherichia coli Strains Isolated from Dairy Cattle in Portugal
Q37662816	Draft Genome Sequences of Dermacoccus nishinomiyaensis Strains UCD-KPL2534 and UCD-KPL2528 Isolated from an Indoor Track Facility
Q55282429	Draft Genome Sequences of Enterococcus mundtii Strains Isolated from Beef Slaughterhouses in Kenya.
Q96591476	Draft Genome Sequences of Five Carnobacterium sp. Strains Isolated from Freshwater Ponds in Belgium
Q90383516	Draft Genome Sequences of Five Methicillin-Sensitive Staphylococcus aureus Isolates from Skin Lesions in Patients with Atopic Dermatitis in the Russian Federation
Q53703588	Draft Genome Sequences of Six Vibrio diazotrophicus Strains Isolated from Deep Subsurface Sediments of the Baltic Sea.
Q48257796	Draft Whole-Genome Sequence of Deinococcus sp. UR1, a Putative Novel Species Isolated from an External Stainless Steel Surface in the Canadian Prairies
Q46888693	Draft Whole-Genome Sequences of Periodontal Pathobionts Porphyromonas gingivalis, Prevotella intermedia, and Tannerella forsythia Contain Phase-Variable Restriction-Modification Systems.
Q42374149	Draft genome sequence and characterization of commensal Escherichia coli strain BG1 isolated from bovine gastro-intestinal tract
Q58582043	Draft genome sequence data of a tigecycline-resistant ST93 clinical strain isolated from bloodstream infection
Q61812933	Draft genome sequence data of strain DTA83 isolated from infant stools
Q33796579	Draft genome sequence of a multidrug-resistant beta-lactamase OXA-357-producing Acinetobacter pittii ST865 clinical isolate from China
Q47591142	Draft genome sequence of a tigecycline-resistant KPC-2-producing Klebsiella pneumoniae ST15 clinical isolate from China.
Q95360794	Draft genome sequence of a uropathogenic Escherichia coli isolate (ST38 O1:H15) from Pakistan, an emerging multidrug-resistant sequence type with a high virulence profile
Q90919003	Draft genome sequence of an NDM-5, CTX-M-15 and OXA-1 co-producing Escherichia coli ST167 clinical strain isolated from a urine sample
Q96228250	Draft genome sequence of antimicrobial producing Paenibacillus alvei strain MP1 reveals putative novel antimicrobials
Q121806550	Draft genome sequences of hydrocarbon degrading Haloferax sp. AB510, Haladaptatus sp. AB618 and Haladaptatus sp. AB643 isolated from the estuarine sediments of Sundarban mangrove forests, India
Q64238766	Dual β-Lactam Combinations Highly Active against Mycobacterium abscessus Complex
Q96431854	Dual-Seq reveals genome and transcriptome of Caedibacter taeniospiralis, obligate endosymbiont of Paramecium
Q96235226	Duplication and diversification of a unique chromosomal virulence island hosting the subtilase cytotoxin in Escherichia coli ST58
Q95943454	Dynamics of bacteriophages in gut of giant pandas reveal a potential regulation of dietary intake on bacteriophage composition
Q89579256	Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France
Q59350179	Dynamics of the human gut phageome during antibiotic treatment
Q112290884	Ecogenomics and Adaptation Strategies of Southern Ocean Viral Communities
Q91927200	Ecological and functional capabilities of an uncultured Kordia sp
Q110944651	Ecology of active viruses and their bacterial hosts in frozen Arctic peat soil revealed with H218O stable isotope probing metagenomics
Q125659361	Eikenella glucosivorans sp. nov., isolated from a human throat swab, and emendation of the genus Eikenella to include saccharolytic species
Q30401330	Emergence and Evolution of Multidrug-Resistant Klebsiella pneumoniae with both blaKPC and blaCTX-M Integrated in Chromosome
Q92152997	Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia
Q115659321	Emergence of a Multidrug-Resistant Escherichia coli Co-Carrying a New mcr-1.33 Variant and blaNDM-5 Genes Recovered from a Urinary Tract Infection
Q91969387	Emergence of a Novel Salmonella enterica Serotype Reading Clonal Group Is Linked to Its Expansion in Commercial Turkey Production, Resulting in Unanticipated Human Illness in North America
Q40101391	Emergence of a Streptococcus dysgalactiae subspecies equisimilis stG62647-lineage associated with severe clinical manifestations
Q92282556	Emergence of a hybrid plasmid derived from IncN1-F33:A-:B- and mcr-1-bearing plasmids mediated by IS26
Q61695660	Emergence of carbapenem, beta-lactamase inhibitor and cefoxitin resistant lineages from a background of ESBL-producing Klebsiella pneumoniae and K. quasipneumoniae highlights different evolutionary mechanisms
Q112739700	Emergence of methicillin resistance predates the clinical use of antibiotics
Q96023482	Emerging Threat of Antimicrobial Resistance in β-Hemolytic Streptococci
Q92829151	Encapsulation of E. coli phage ZCEC5 in chitosan-alginate beads as a delivery system in phage therapy
Q112281689	Endogenous CRISPR-Cas Systems in Group I Clostridium botulinum and Clostridium sporogenes Do Not Directly Target the Botulinum Neurotoxin Gene Cluster
Q102376398	Endolysins from Antarctic Pseudomonas Display Lysozyme Activity at Low Temperature
Q91599328	Enhanced antibacterial effect of the novel T4-like bacteriophage KARL-1 in combination with antibiotics against multi-drug resistant Acinetobacter baumannii
Q91086938	Enhancing genomics-based outbreak detection of endemic Salmonella enterica serovar Typhimurium using dynamic thresholds
Q88950572	Enterococcus faecium produces membrane vesicles containing virulence factors and antimicrobial resistance related proteins
Q115652153	Epidemic HI2 Plasmids Mobilising the Carbapenemase Gene blaIMP-4 in Australian Clinical Samples Identified in Multiple Sublineages of Escherichia coli ST216 Colonising Silver Gulls
Q96354391	Epidemiological and genetic characterization of Clostridium butyricum cultured from neonatal cases of necrotizing enterocolitis in China
Q91452523	Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis
Q101556065	Epigenomics, genomics, resistome, mobilome, virulome and evolutionary phylogenomics of carbapenem-resistant Klebsiella pneumoniae clinical strains
Q89736269	Escherichia coli ST302: Genomic Analysis of Virulence Potential and Antimicrobial Resistance Mediated by Mobile Genetic Elements
Q91933031	EspFu-Mediated Actin Assembly Enhances Enteropathogenic Escherichia coli Adherence and Activates Host Cell Inflammatory Signaling Pathways
Q112728632	Estimation of pathogenic potential of an environmental Pseudomonas aeruginosa isolate using comparative genomics
Q58728959	Evaluating the Safety of Potential Probiotic KLDS6.0930 Using Whole Genome Sequencing and Oral Toxicity Study
Q112572152	Evidence for the Rapid and Divergent Evolution of Mycoplasmas: Structural and Phylogenetic Analysis of Enolases
Q104069238	Evolution along the parasitism-mutualism continuum determines the genetic repertoire of prophages
Q107981588	Evolution of DNA packaging in gene transfer agents
Q92406166	Evolution of Listeria monocytogenes in a Food Processing Plant Involves Limited Single-Nucleotide Substitutions but Considerable Diversification by Gain and Loss of Prophages
Q64255033	Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1
Q93077537	Evolution of a major bovine mastitic genotype (rpoB sequence type 10-2) of Staphylococcus aureus in cows
Q48095816	Evolution of the Quorum network and the mobilome (plasmids and bacteriophages) in clinical strains of Acinetobacter baumannii during a decade
Q61479911	Evolution of the β-lactam-resistant Streptococcus pneumoniae PMEN3 clone over a 30 year period in Barcelona, Spain
Q43134911	Evolutionary Genomics of an Ancient Prophage of the Order Sphingomonadales
Q34557099	Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain
Q112292099	Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia
Q96618139	Evolutionary epidemiology of Streptococcus iniae: Linking mutation rate dynamics with adaptation to novel immunological landscapes
Q112304284	Expanding Characterized Diversity and the Pool of Complete Genome Sequences of Methylococcus Species, the Bacteria of High Environmental and Biotechnological Relevance
Q92872595	Expanding Tiny Earth to genomics: a bioinformatics approach for an undergraduate class to characterize antagonistic strains
Q33882520	Expanding landscapes of the diversified mcr-1-bearing plasmid reservoirs
Q52604672	Expert Opinion on Three Phage Therapy Related Topics: Bacterial Phage Resistance, Phage Training and Prophages in Bacterial Production Strains.
Q57055316	Exploration of Survival Traits, Probiotic Determinants, Host Interactions, and Functional Evolution of Bifidobacterial Genomes Using Comparative Genomics
Q115651799	Exploring Codon Adjustment Strategies towards Escherichia coli-Based Production of Viral Proteins Encoded by HTH1, a Novel Prophage of the Marine Bacterium Hypnocyclicus thermotrophus
Q96121630	Exploring potential of vaginal Lactobacillus isolates from South African women for enhancing treatment for bacterial vaginosis
Q112704212	Exploring the genome of Lactobacillaceae spp. Sy-1 isolated from Heterotrigona itama honey
Q52684905	Extending the hosts of Tectiviridae into four additional genera of Gram-positive bacteria and more diverse Bacillus species.
Q89591538	Extensive Genomic Rearrangements along with Distinct Mobilome and TALome are Associated with Extreme Pathotypes of a Rice Pathogen
Q91359088	Extensive drug resistant Salmonella enterica serovar Senftenberg carrying blaNDM encoding plasmid p5558 (IncA/C) from India
Q112233977	Extraordinary Multi-Organismal Interactions Involving Bacteriophages, Bacteria, Fungi, and Rotifers: Quadruple Microbial Trophic Network in Water Droplets
Q91071831	Faecal phageome of healthy individuals: presence of antibiotic resistance genes and variations caused by ciprofloxacin treatment
Q90280161	Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model
Q64886161	Fighting Fire with Fire: Phage Potential for the Treatment of E. coli O157 Infection.
Q96771071	Fine capsule variation affects bacteriophage susceptibility in Klebsiella pneumoniae ST258
Q59813766	First Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Worthington Strain CFSAN051295, Isolated from Pistachio
Q97550815	First Complete Genome Sequences of Janthinobacterium lividum EIF1 and EIF2 and their Comparative Genome Analysis
Q55001115	First Insight into the Genome Sequence of Clostridium liquoris DSM 100320, a Butyrate- and Ethanol-Producing Bacterium.
Q102973085	First Report of New Delhi Metallo-β-Lactamase-6 (NDM-6) in a Clinical Acinetobacter baumannii Isolate From Northern Spain
Q90861337	First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep
Q91875583	First high-quality draft genome of Ochrobactrum haematophilum P6BS-III, a highly glyphosate-tolerant strain isolated from agricultural soil in Argentina
Q112713035	First report from Bangladesh on genetic diversity of multidrug-resistant Pasteurella multocida type B:2 in fowl cholera
Q52562862	First report of the occurrence and whole-genome characterization of Edwardsiella tarda in the false killer whale (Pseudorca crassidens).
Q112287755	Flavobacterium flabelliforme sp. nov. and Flavobacterium geliluteum sp. nov., Two Multidrug-Resistant Psychrotrophic Species Isolated From Antarctica
Q92882077	Form III RubisCO-mediated transaldolase variant of the Calvin cycle in a chemolithoautotrophic bacterium
Q121603069	Forty Years of Oxalobacter formigenes, a Gutsy Oxalate-Degrading Specialist
Q91528636	Fourier-Transform Infrared (FTIR) Spectroscopy for Typing of Clinical Enterobacter cloacae Complex Isolates
Q92857608	Friends With Benefits: Exploring the Phycosphere of the Marine Diatom Skeletonema marinoi
Q42199326	Full-Genome Sequence of Listeria monocytogenes Strain H34, Isolated from a Newborn with Sepsis in Uruguay
Q91271648	Functional and Comparative Genomic Analysis of Integrated Prophage-Like Sequences in "Candidatus Liberibacter asiaticus"
Q124016982	Functional and comparative genomic analysis of integrated prophage-like sequences in Candidatus Liberibacter asiaticus
Q60213473	Functional annotation and distribution overview of RNA families in 27 Streptococcus agalactiae genomes
Q100731045	Functional genomics reveals the toxin-antitoxin repertoire and AbiE activity in Serratia
Q117798658	Functional pangenome analysis reveals high virulence plasticity of Aliarcobacter butzleri and affinity to human mucus
Q112283564	Functional strain redundancy and persistent phage infection in Swiss hard cheese starter cultures
Q92563055	Gene duplication and deletion, not horizontal transfer, drove intra-species mosaicism of Bartonella henselae
Q93115342	Generation of a Prophage-Free Variant of the Fast-Growing Bacterium Vibrio natriegens
Q51783645	Genetic Analysis of Virulence Potential of Escherichia coli O104 Serotypes Isolated From Cattle Feces Using Whole Genome Sequencing.
Q92001002	Genetic Diversity of Non-O157 Shiga Toxin-Producing Escherichia coli Recovered From Patients in Michigan and Connecticut
Q93105841	Genetic Diversity of Salmonella Derby from the Poultry Sector in Europe
Q47104492	Genetic Environment of cry1 Genes Indicates Their Common Origin.
Q92570140	Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics
Q49828986	Genetic Separation of Listeria monocytogenes Causing Central Nervous System Infections in Animals.
Q96173678	Genetic and Virulence Profiles of Enteroaggregative Escherichia coli (EAEC) Isolated From Deployed Military Personnel (DMP) With Travelers' Diarrhea
Q115756143	Genetic diversity and whole genome sequence analysis data of multidrug resistant atypical enteropathogenic Escherichia coli O177 strains: An assessment of food safety and public health implications
Q92155986	Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas Fermenter
Q114116558	Genome Analysis of Acinetobacter lwoffii Strains Isolated from Permafrost Soils Aged from 15 Thousand to 1.8 Million Years Revealed Their Close Relationships with Present-Day Environmental and Clinical Isolates
Q37578190	Genome Analysis of Clostridium difficile PCR Ribotype 014 Lineage in Australian Pigs and Humans Reveals a Diverse Genetic Repertoire and Signatures of Long-Range Interspecies Transmission
Q60961127	Genome Analysis of Haplotype D of Liberibacter Solanacearum
Q89736275	Genome Analysis of Lactobacillus plantarum Isolated From Some Indian Fermented Foods for Bacteriocin Production and Probiotic Marker Genes
Q90057603	Genome Analysis of Multidrug-Resistant Escherichia coli Isolated from Poultry in Nigeria
Q64270378	Genome Analysis of Shigella flexneri Serotype 3b Strain SFL1520 Reveals Significant Horizontal Gene Acquisitions Including a Multidrug Resistance Cassette
Q102066357	Genome Characterization of a Novel Wastewater Bacteroides fragilis Bacteriophage (vB_BfrS_23) and its Host GB124
Q100508791	Genome Complexity Browser: Visualization and quantification of genome variability
Q125573631	Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees
Q64230979	Genome Mining and Comparative Analysis of Causing Brain Abscess in a Child
Q121093879	Genome Reduction and Secondary Metabolism of the Marine Sponge-Associated Cyanobacterium
Q115653624	Genome Sequence Analysis and Characterization of Shiga Toxin 2 Production by Escherichia coli O157:H7 Strains Associated With a Laboratory Infection
Q64103260	Genome Sequence of Bordetella pertussis Vaccine Strain BP 165
Q41987732	Genome Sequence of Escherichia coli E28, a Multidrug-Resistant Strain Isolated from a Chicken Carcass, and Its Spontaneously Inducible Prophage
Q115673705	Genome Sequence of Escherichia coli Isolated from an Adult in Kibera, an Urban Informal Settlement in Nairobi, Kenya
Q48163724	Genome Sequence of Rhizobium sullae HCNT1 Isolated from Hedysarum coronarium Nodules and Featuring Peculiar Denitrification Phenotypes
Q92507706	Genome Sequence of a T4-like Phage, Escherichia Phage vB_EcoM-Sa45lw, Infecting Shiga Toxin-Producing Escherichia coli Strains
Q90125982	Genome Sequence of an Emerging Salmonella enterica Serovar Infantis and Genomic Comparison with Other S. Infantis Strains
Q55416046	Genome Sequence of the Pseudomonas protegens Phage ΦGP100.
Q42316904	Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms
Q55646648	Genome Sequences of Listeria Phages Induced from Lysogenic Isolates of Listeria monocytogenes from Seafood and a Seafood Processing Environment in Thailand.
Q55438781	Genome Sequences of Shewanella baltica and Shewanella morhuae Strains Isolated from the Gastrointestinal Tract of Freshwater Fish.
Q91808078	Genome Sequences of Six Prophages Isolated from Staphylococcus pseudintermedius Strains Recovered from Human and Animal Clinical Specimens
Q92921357	Genome Sequencing of Pantoea agglomerans C1 Provides Insights into Molecular and Genetic Mechanisms of Plant Growth-Promotion and Tolerance to Heavy Metals
Q112718219	Genome analyses of four Wolbachia strains and associated mitochondria of Rhagoletis cerasi expose cumulative modularity of cytoplasmic incompatibility factors and cytoplasmic hitchhiking across host populations
Q112294045	Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation
Q61804754	Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256
Q112779800	Genome analysis of Spiroplasma citri strains from different host plants and its leafhopper vectors
Q115748784	Genome analysis of a new Escherichia phage vB_EcoM_C2-3 with lytic activity against multidrug-resistant Escherichia coli
Q89583542	Genome analysis of a wild rumen bacterium Enterobacter aerogenes LU2 - a novel bio-based succinic acid producer
Q115756878	Genome analysis of two multidrug-resistant Escherichia coli O8:H9-ST48 strains isolated from lettuce
Q100954881	Genome analysis reveals probiotic prop-ensities of Paenibacillus polymyxa HK4
Q112306109	Genome analysis to decipher syntrophy in the bacterial consortium 'SCP' for azo dye degradation
Q64101047	Genome and proteome of the chlorophyll f-producing cyanobacterium Halomicronema hongdechloris: adaptative proteomic shifts under different light conditions
Q62748929	Genome annotation and comparative genomic analysis of Bacillus subtilis MJ01, a new bio-degradation strain isolated from oil-contaminated soil
Q92820391	Genome based safety assessment for Bacillus coagulans strain LBSC (DSM 17654) for probiotic application
Q52561909	Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments.
Q46378845	Genome characteristics of the proteorhodopsin-containing marine flavobacterium Polaribacter dokdonensis DSW-5.
Q47215769	Genome characterization of piscine 'Scale drop and Muscle Necrosis syndrome'-associated strain of Vibrio harveyi focusing on bacterial virulence determinants
Q92373705	Genome comparison between clinical and environmental strains of Herbaspirillum seropedicae reveals a potential new emerging bacterium adapted to human hosts
Q61798412	Genome expansion of an obligate parthenogenesis-associated Wolbachia poses an exception to the symbiont reduction model
Q42372731	Genome of Ca. Pandoraea novymonadis, an Endosymbiotic Bacterium of the Trypanosomatid Novymonas esmeraldas
Q40425955	Genome of the carbapenemase-producing clinical isolate Elizabethkingia miricola EM_CHUV and comparative genomics with Elizabethkingia meningoseptica and Elizabethkingia anophelis: evidence for intrinsic multidrug resistance trait of emerging pathoge
Q64259776	Genome plasticity favours double chromosomal Tn4401b-bla transposon insertion in the Pseudomonas aeruginosa ST235 clone
Q64232752	Genome sequence of Bacillus anthracis typing phage AP631
Q33677301	Genome sequence of Shigella flexneri strain SP1, a diarrheal isolate that encodes an extended-spectrum β-lactamase (ESBL)
Q90998796	Genome sequence, metabolic properties and cyanobacterial attachment of Porphyrobacter sp. HT-58-2 isolated from a filamentous cyanobacterium-microbial consortium
Q91784704	Genome sequencing and analysis of Salmonella enterica subsp. enterica serovar Stanley UPM 517: Insights on its virulence-associated elements and their potentials as vaccine candidates
Q38613794	Genome sequencing and comparative genomics of enterohemorrhagic Escherichia coli O145:H25 and O145:H28 reveal distinct evolutionary paths and marked variations in traits associated with virulence & colonization
Q115754658	Genome stability during serial subculturing in hyperepidemic multidrug-resistant Klebsiella pneumoniae and Escherichia coli
Q115702826	Genome structural variation in Escherichia coli O157:H7
Q99414210	Genome-Assisted Characterization of Lactobacillus fermentum, Weissella cibaria, and Weissella confusa Strains Isolated from Sorghum as Starters for Sourdough Fermentation
Q89494963	Genome-Based Comparison of All Species of the Genus Moorella, and Status of the Species Moorella thermoacetica and Moorella thermoautotrophica
Q54994074	Genome-Guided Analysis of Clostridium ultunense and Comparative Genomics Reveal Different Strategies for Acetate Oxidation and Energy Conservation in Syntrophic Acetate-Oxidising Bacteria.
Q40248817	Genome-Wide Analysis Provides Evidence on the Genetic Relatedness of the Emergent Xylella fastidiosa Genotype in Italy to Isolates from Central America.
Q53685087	Genome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014.
Q115285826	Genome-driven elucidation of phage-host interplay and impact of phage resistance evolution on bacterial fitness
Q89931955	Genome-wide analyses of Liberibacter species provides insights into evolution, phylogenetic relationships, and virulence factors
Q112728584	Genome-wide comparison of four MRSA clinical isolates from Germany and Hungary
Q89628677	Genomic Acquisitions in Emerging Populations of Xanthomonas vasicola pv. vasculorum Infecting Corn in the United States and Argentina
Q112711331	Genomic Analysis of Global Staphylococcus argenteus Strains Reveals Distinct Lineages With Differing Virulence and Antibiotic Resistance Gene Content
Q114579511	Genomic Analysis of Pasteurella atlantica Provides Insight on Its Virulence Factors and Phylogeny and Highlights the Potential of Reverse Vaccinology in Aquaculture
Q92770481	Genomic Analysis of Wolbachia from Laodelphax striatellus (Delphacidae, Hemiptera) Reveals Insights into Its "Jekyll and Hyde" Mode of Infection Pattern
Q115652830	Genomic Analysis of a Hybrid Enteroaggregative Hemorrhagic Escherichia coli O181:H4 Strain Causing Colitis with Hemolytic-Uremic Syndrome
Q115651801	Genomic Analysis of a Novel Phage Infecting the Turkey Pathogen Escherichia coli APEC O78 and Its Endolysin Activity
Q47106857	Genomic Analysis of a Pathogenic Bacterium, Paeniclostridium sordellii CBA7122 Containing the Highest Number of rRNA Operons, Isolated from a Human Stool Sample.
Q89994042	Genomic Analysis of γ-Hexachlorocyclohexane-Degrading Sphingopyxis lindanitolerans WS5A3p Strain in the Context of the Pangenome of Sphingopyxis
Q102051832	Genomic Characterisation of Mushroom Pathogenic Pseudomonads and Their Interaction with Bacteriophages
Q100762701	Genomic Characteristics of Invasive Streptococcus pneumoniae Serotype 1 in New Caledonia Prior to the Introduction of PCV13
Q112701601	Genomic Characteristics of Recently Recognized Vibrio cholerae El Tor Lineages Associated with Cholera in Bangladesh, 1991 to 2017
Q122712752	Genomic Characterization and Genetic Profiles of Salmonella Gallinarum Strains Isolated from Layers with Fowl Typhoid in Colombia
Q112296534	Genomic Characterization of Salmonella enterica Isolates From Retail Meat in Beijing, China
Q115653443	Genomic Characterization of Multidrug-Resistant Escherichia coli BH100 Sub-strains
Q115653428	Genomic Characterization of Two Shiga Toxin–Converting Bacteriophages Induced From Environmental Shiga Toxin–Producing Escherichia coli
Q89494878	Genomic Characterization of a Mercury Resistant Arthrobacter sp. H-02-3 Reveals the Presence Heavy Metal and Antibiotic Resistance Determinants
Q115659290	Genomic Characterization of a Multidrug-Resistant Escherichia coli Isolate Co-Carrying blaNDM-5 and blaCTX-M-14 Genes Recovered from a Pediatric Patient in China
Q92729015	Genomic Characterization of a Multidrug-Resistant and Hypermucoviscous/Hypervirulent Klebsiella quasipneumoniae subsp. similipneumoniae ST4417 Isolated from a Sewage Treatment Plant
Q28820996	Genomic Comparison of Agrobacterium pusense Strains Isolated from Bean Nodules
Q90454645	Genomic Comparison of Highly Virulent, Moderately Virulent, and Avirulent Strains From a Genetically Closely-Related MRSA ST239 Sub-lineage Provides Insights Into Pathogenesis
Q91782287	Genomic Comparison of Lactobacillus helveticus Strains Highlights Probiotic Potential
Q112649284	Genomic Comparisons and Phenotypic Diversity of Dickeya zeae Strains Causing Bacterial Soft Rot of Banana in China
Q91810394	Genomic Diversity of Common Sequence Types of Listeria monocytogenes Isolated from Ready-to-Eat Products of Animal Origin in South Africa
Q58802911	Genomic Diversity of Isolated from Clinical and Non-Clinical Samples in Chile
Q115653206	Genomic Diversity, Virulence Gene, and Prophage Arrays of Bovine and Human Shiga Toxigenic and Enteropathogenic Escherichia coli Strains Isolated in Hungary
Q112579097	Genomic Epidemiology and Global Population Structure of Exfoliative Toxin A-Producing Staphylococcus aureus Strains Associated With Staphylococcal Scalded Skin Syndrome
Q104614524	Genomic Insight into Pediococcus acidilactici HN9, a Potential Probiotic Strain Isolated from the Traditional Thai-Style Fermented Beef Nhang
Q90031620	Genomic Insight into Natural Inactivation of Shiga Toxin 2 Production in an Environmental Escherichia coli Strain Producing Shiga Toxin 1
Q98511936	Genomic Insight of VIM-harboring IncA Plasmid from a Clinical ST69 Escherichia coli Strain in Italy
Q90705141	Genomic Insights Into Five Strains of Lactobacillus plantarum With Biotechnological Potential Isolated From chicha, a Traditional Maize-Based Fermented Beverage From Northwestern Argentina
Q112727197	Genomic Investigation of Virulence Potential in Shiga Toxin Escherichia coli (STEC) Strains From a Semi-Hard Raw Milk Cheese
Q97687709	Genomic Islands in Mycoplasmas
Q115652328	Genomic Profiling of Antibiotic-Resistant Escherichia coli Isolates from Surface Water of Agricultural Drainage in North-Western Mexico: Detection of the International High-Risk Lineages ST410 and ST617
Q112288186	Genomic Sequence Analysis of Methicillin- and Carbapenem-Resistant Bacteria Isolated from Raw Sewage
Q112714423	Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome
Q60046106	Genomic Study of a Clostridium difficile Multidrug Resistant Outbreak-Related Clone Reveals Novel Determinants of Resistance
Q98735226	Genomic Surveillance of Ceftriaxone-Resistant Escherichia coli in Western New York Suggests the Extended-Spectrum β-Lactamase bla CTX-M-27 Is Emerging on Distinct Plasmids in ST38
Q96964318	Genomic analyses of multidrug-resistant Salmonella Indiana, Typhimurium, and Enteritidis isolates using MinION and MiSeq sequencing technologies
Q64904151	Genomic analyses of two novel biofilm-degrading methicillin-resistant Staphylococcus aureus phages.
Q55556039	Genomic analyses reveal two distinct lineages of Corynebacterium ulcerans strains.
Q92053402	Genomic analysis of Chromobacterium haemolyticum: insights into the species resistome, virulence determinants and genome plasticity
Q64066371	Genomic analysis of Leptospira interrogans serovar Paidjan and Dadas isolates from carrier dogs and comparative genomic analysis to detect genes under positive selection
Q121765213	Genomic analysis of Paenibacillus sp. MDMC362 from the Merzouga desert leads to the identification of a potentially thermostable catalase
Q57167322	Genomic analysis of multi-resistant associated with neonatal sepsis
Q91003547	Genomic analysis of three Clostridioides difficile isolates from urban water sources
Q115236220	Genomic analysis of two Bacillus safensis isolated from Merzouga desert reveals desert adaptive and potential plant growth-promoting traits
Q91949177	Genomic analysis revealed adaptive mechanism to plant-related fermentation of Lactobacillus plantarum NCU116 and Lactobacillus spp
Q100395108	Genomic analysis reveals high virulence and antibiotic resistance amongst phage susceptible Acinetobacter baumannii
Q91990696	Genomic analysis unveils important aspects of population structure, virulence, and antimicrobial resistance in Klebsiella aerogenes
Q112728176	Genomic and Functional Characterization of Enterococcus faecalis Isolates Recovered From the International Space Station and Their Potential for Pathogenicity
Q112302821	Genomic and Functional Dissections of Dickeya zeae Shed Light on the Role of Type III Secretion System and Cell Wall-Degrading Enzymes to Host Range and Virulence
Q110614942	Genomic and Phenotypic Biology of Novel Strains of Isolated From Pineapple and Taro in Hawaii: Insights Into Genome Plasticity, Pathogenicity, and Virulence Determinants
Q113786888	Genomic and Phenotypic Characterization of Clostridium botulinum Isolates from an Infant Botulism Case Suggests Adaptation Signatures to the Gut
Q113786720	Genomic and Phenotypic Characterization of the Nontoxigenic Clostridioides difficile Strain CCUG37785 and Demonstration of Its Therapeutic Potential for the Prevention of C. difficile Infection
Q91650867	Genomic and evolutionary features of two AHPND positive Vibrio parahaemolyticus strains isolated from shrimp (Penaeus monodon) of south-west Bangladesh
Q90196583	Genomic and phenotypic assessments of safety and probiotic properties of Streptococcus macedonicus strains of dairy origin
Q53700756	Genomic and physiological analyses of an indigenous strain, Enterococcus faecium 17OM39.
Q47141497	Genomic assessment in Lactobacillus plantarum links the butyrogenic pathway with glutamine metabolism
Q89935953	Genomic characterisation of Salmonella enterica serovar Wangata isolates obtained from different sources reveals low genomic diversity
Q112702336	Genomic characterisation of an entomopathogenic strain of Serratia ureilytica in the critically endangered phasmid Dryococelus australis
Q57128357	Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools
Q60910564	Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates
Q102976383	Genomic characterization and phylogenetic analysis of Salmonella enterica serovar Javiana
Q60942526	Genomic characterization of Listeria monocytogenes isolates reveals that their persistence in a pig slaughterhouse is linked to the presence of benzalkonium chloride resistance genes
Q53692539	Genomic characterization of endemic Salmonella enterica serovar Typhimurium and Salmonella enterica serovar I 4,[5],12:i:- isolated in Malaysia.
Q90327071	Genomic characterization of filamentous phage vB_VpaI_VP-3218, an inducible prophage of Vibrio parahaemolyticus
Q115739270	Genomic characterization of multidrug-resistant extraintestinal pathogenic Escherichia coli isolated from grain culture soils
Q89930953	Genomic characterization of newly completed genomes of botulinum neurotoxin-producing species from Argentina, Australia and Africa
Q96948190	Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing
Q91055940	Genomic comparison of diverse Salmonella serovars isolated from swine
Q40114225	Genomic comparison of virulent and non-virulent serotype V ST1 Streptococcus agalactiae in fish
Q112713133	Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655
Q92212189	Genomic dissection of the most prevalent Listeria monocytogenes clone, sequence type ST87, in China
Q120684733	Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches
Q103742948	Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia
Q118620580	Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia
Q99410764	Genomic diversity of Escherichia coli isolates from non-human primates in the Gambia
Q118620602	Genomic diversity of Escherichia coli isolates from non-human primates in the Gambia
Q92137784	Genomic information on Stenotrophomonas maltophilia ST264 isolated from a cystic fibrosis pediatric patient in Brazil
Q112695169	Genomic insights into Lactobacillus gasseri and Lactobacillus paragasseri
Q64929045	Genomic insights into a robust gamma-aminobutyric acid-producer Lactobacillus brevis CD0817.
Q113868868	Genomic insights into blaNDM-carrying carbapenem-resistant Klebsiella pneumoniae clinical isolates from a university hospital in Thailand
Q96125538	Genomic insights into multidrug-resistant and hypervirulent Klebsiella pneumoniae co-harboring metal resistance genes in aquatic environments
Q47658576	Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments
Q57067326	Genomic insights of Vibrio harveyi RT-6 strain, from infected "Whiteleg shrimp" (Litopenaeus vannamei) using Illumina Platform
Q36270047	Genomic sequence of 'Candidatus Liberibacter solanacearum' haplotype C and its comparison with haplotype A and B genomes
Q98881154	Genomic signatures of honey bee association in an acetic acid symbiont
Q58610416	Genomic, Phenotypic, and Virulence Analysis of Streptococcus sanguinis Oral and Infective-Endocarditis Isolates.
Q92824265	Genomic, metabolic and phenotypic variability shapes ecological differentiation and intraspecies interactions of Alteromonas macleodii
Q99555722	Genomics Reveals the Metabolic Potential and Functions in the Redistribution of Dissolved Organic Matter in Marine Environments of the Genus Thalassotalea
Q91973359	Genomics of Serratia marcescens Isolates Causing Outbreaks in the Same Pediatric Unit 47 Years Apart: Position in an Updated Phylogeny of the Species
Q60933768	Genotypic differences between strains of the opportunistic pathogen Corynebacterium bovis isolated from humans, cows, and rodents
Q104608688	Genotyping Study of Salmonella 4,[5],12:i:- Monophasic Variant of Serovar Typhimurium and Characterization of the Second-Phase Flagellar Deletion by Whole Genome Sequencing
Q54978864	Genus-wide comparison of Pseudovibrio bacterial genomes reveal diverse adaptations to different marine invertebrate hosts.
Q41653215	Glimpse into the genome sequence of a multidrug-resistant Acinetobacter pittii ST950 clinical isolate carrying the blaOXA-72 and blaOXA-533 genes in China
Q97548499	Global distribution of epidemic-related Shiga toxin 2 encoding phages among enteroaggregative Escherichia coli
Q114600296	Global diversity and distribution of prophages are lineage-specific within the Ralstonia solanacearum species complex
Q112291265	Global spread of Salmonella Enteritidis via centralized sourcing and international trade of poultry breeding stocks
Q57823035	Global spread of three multidrug-resistant lineages of Staphylococcus epidermidis
Q51782613	Growth advantage of Escherichia coli O104:H4 strains on 5-N-acetyl-9-O-acetyl neuraminic acid as a carbon source is dependent on heterogeneous phage-Borne nanS-p esterases.
Q112704922	Healthcare-associated infections caused by chlorhexidine-tolerant Serratia marcescens carrying a promiscuous IncHI2 multi-drug resistance plasmid in a veterinary hospital
Q47119812	Heat Resistance Mediated by pLM58 Plasmid-Borne ClpL in Listeria monocytogenes
Q112302627	Heat-Killed Lacticaseibacillus paracasei GMNL-653 Exerts Antiosteoporotic Effects by Restoring the Gut Microbiota Dysbiosis in Ovariectomized Mice
Q112581846	High Potential for Secondary Metabolite Production of Paracoccus marcusii CP157, Isolated From the Crustacean Cancer pagurus
Q97905213	High diversity and variability of pipolins among a wide range of pathogenic Escherichia coli strains
Q98732932	High diversity of Vibrio spp. associated with different ecological niches in a marine aquaria system and description of Vibrio aquimaris sp. nov
Q59809358	High frequency of hybrid Escherichia coli strains with combined Intestinal Pathogenic Escherichia coli (IPEC) and Extraintestinal Pathogenic Escherichia coli (ExPEC) virulence factors isolated from human faecal samples
Q96964194	High genetic similarity between non-typhoidal Salmonella isolated from paired blood and stool samples of children in the Democratic Republic of the Congo
Q113860991	High plasmidome diversity of extended-spectrum beta-lactam-resistant Escherichia coli isolates collected during one year in one community hospital
Q47390209	High prevalence and genetic diversity of large phiCD211/phiCDIF1296T-like prophages in Clostridioides difficile.
Q93039685	High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers
Q112586029	High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains
Q111449689	High-quality complete genome resource of plant pathogenic bacterium Dickeya solani strain IPO 2019 isolated from Hyacinthus orientalis
Q42363897	High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain
Q115721542	High-quality pan-genome of Escherichia coli generated by excluding confounding and highly similar strains reveals an association between unique gene clusters and genomic islands
Q30378390	High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr.
Q112718995	High-risk clones of extended-spectrum β-lactamase-producing Klebsiella pneumoniae isolated from the University Hospital Establishment of Oran, Algeria (2011-2012)
Q112289851	High-throughput identification of viral termini and packaging mechanisms in virome datasets using PhageTermVirome
Q121653971	Highly host-linked viromes in the built environment possess habitat-dependent diversity and functions for potential virus-host coevolution
Q90371172	Honey bees harbor a diverse gut virome engaging in nested strain-level interactions with the microbiota
Q93268437	Honey-bee-associated prokaryotic viral communities reveal wide viral diversity and a profound metabolic coding potential
Q99550940	Horizontal Gene Transfer Clarifies Taxonomic Confusion and Promotes the Genetic Diversity and Pathogenicity of Plesiomonas shigelloides
Q93021107	Horizontal Gene Transfer and Acquired Antibiotic Resistance in Salmonella enterica Serovar Heidelberg following In Vitro Incubation in Broiler Ceca
Q92734400	Horizontal gene transfer overrides mutation in Escherichia coli colonizing the mammalian gut
Q102379215	Horizontally acquired papGII-containing pathogenicity islands underlie the emergence of invasive uropathogenic Escherichia coli lineages
Q64065478	Host Taxon Predictor - A Tool for Predicting Taxon of the Host of a Newly Discovered Virus
Q101337800	Host adaptation and microbial competition drive Ralstonia solanacearum phylotype I evolution in the Republic of Korea
Q112597413	Host and body site-specific adaptation of Lactobacillus crispatus genomes
Q59352097	Host range and molecular characterization of a lytic Pradovirus-like Ralstonia phage RsoP1IDN isolated from Indonesia
Q96647138	Host range, morphological and genomic characterisation of bacteriophages with activity against clinical Streptococcus agalactiae isolates
Q89467832	Host-Specific Evolutionary and Transmission Dynamics Shape the Functional Diversification of Staphylococcus epidermidis in Human Skin
Q66679106	Human Virome and Disease: High-Throughput Sequencing for Virus Discovery, Identification of Phage-Bacteria Dysbiosis and Development of Therapeutic Approaches with Emphasis on the Human Gut
Q99723248	Hybrid assembly of multi-drug resistant, highly virulent methicillin resistant Staphylococcus aureus ST772-SCCmec V lineage: Maximising its potential for dissemination similar to USA300 clone
Q112297431	Hybrid genome de novo assembly with methylome analysis of the anaerobic thermophilic subsurface bacterium Thermanaerosceptrum fracticalcis strain DRI-13^T
Q92882304	Hypermutation as an Evolutionary Mechanism for Achromobacter xylosoxidans in Cystic Fibrosis Lung Infection
Q125076303	Hypersaline Lake Urmia: a potential hotspot for microbial genomic variation
Q91175943	Hypervirulent clade 2, ribotype 019/sequence type 67 Clostridioides difficile strain from Japan
Q59888211	ICS 2017 Abstracts
Q64092621	Identification and Characterization of a Dominant Sulfolane-Degrading Rhodoferax sp. via Stable Isotope Probing Combined with Metagenomics
Q54203972	Identification and pathogenomic analysis of an Escherichia coli strain producing a novel Shiga toxin 2 subtype.
Q98241037	Identification of Antimicrobial Resistance Determinants in Aeromonas veronii Strain MS-17-88 Recovered From Channel Catfish (Ictalurus punctatus)
Q92881780	Identification of Novel Bacteriophages with Therapeutic Potential That Target Enterococcus faecalis
Q93084935	Identification of Virulence-Associated Properties by Comparative Genome Analysis of Streptococcus pneumoniae, S. pseudopneumoniae, S. mitis, Three S. oralis Subspecies, and S. infantis
Q95819432	Identification, characterization, and phylogenetic analysis of eight new inducible prophages in Lactobacillus
Q112685060	Identifying genomic islands with deep neural networks
Q106645065	Identifying viruses from metagenomic data using deep learning
Q48105154	Impact of the choice of reference genome on the ability of the core genome SNV methodology to distinguish strains of Salmonella enterica serovar Heidelberg
Q93227670	Impacts of horizontal gene transfer on the compact genome of the clavulanic acid-producing Streptomyces strain F613-1
Q90494569	Implications of Mobile Genetic Elements for Salmonella enterica Single-Nucleotide Polymorphism Subtyping and Source Tracking Investigations
Q64093454	In silico Identification of Serovar-Specific Genes for Salmonella Serotyping
Q55099848	In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters.
Q115659323	In vitro Synergistic Activities of Fosfomycin in Combination with Other Antimicrobial Agents Against Carbapenem-Resistant Escherichia coli Harboring blaNDM-1 on the IncN2 Plasmid and a Study of the Genomic Characteristics of These Pathogens
Q64117094	In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance
Q112721106	Increased whiB7 expression and antibiotic resistance in Mycobacterium chelonae carrying two prophages
Q64120376	Independent Microevolution Mediated by Mobile Genetic Elements of Individual Clostridium difficile Isolates from Clade 4 Revealed by Whole-Genome Sequencing
Q96647658	Influence of SOS-inducing agents on the expression of ArtAB toxin gene in Salmonella enterica and Salmonella bongori
Q96431651	Initial Mapping of the New York City Wastewater Virome
Q98654193	Inside environmental Clostridium perfringens genomes: antibiotic resistance genes, virulence factors and genomic features
Q112737464	Insights Into the Cultivable Bacterial Fraction of Sediments From the Red Sea Mangroves and Physiological, Chemotaxonomic, and Genomic Characterization of Mangrovibacillus cuniculi gen. nov., sp. nov., a Novel Member of the Bacillaceae
Q98511983	Insights into Mobile Genetic Elements of the Biocide-Degrading Bacterium Pseudomonas nitroreducens HBP-1
Q57816051	Insights into the draft genome sequence of bioactives-producing DNG9 isolated from Algerian soil-oil slough
Q97530593	Insights into the dynamics between viruses and their hosts in a hot spring microbial mat
Q115667597	Insights into the genome architecture and evolution of Shiga toxin encoding bacteriophages of Escherichia coli
Q59358918	Insights into the genome diversity and virulence of two clinical isolates of Burkholderia cenocepacia
Q58584466	Insights into the population structure and pan-genome of Haemophilus influenzae
Q89462844	Insights to the diphtheria toxin encoding prophages amongst clinical isolates of Corynebacterium diphtheriae from India
Q97596867	Integrated genome-based probiotic relevance and safety evaluation of Lactobacillus reuteri PNW1
Q101215188	Integrated into Environmental Biofilm Chromobacterium vaccinii Survives Winter with Support of Bacterial Community
Q92354571	Intercellular Transfer of Chromosomal Antimicrobial Resistance Genes between Acinetobacter baumannii Strains Mediated by Prophages
Q112582066	Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae
Q115673605	Interspecies Transmission of CMY-2-Producing Escherichia coli Sequence Type 963 Isolates between Humans and Gulls in Australia
Q92600296	Intracellular Positioning Systems Limit the Entropic Eviction of Secondary Replicons Toward the Nucleoid Edges in Bacterial Cells
Q101137599	Intraspecies diversity and genome-phenotype-associations in Fructilactobacillus sanfranciscensis
Q96292107	Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract
Q100433104	Investigating the demographic history of Japan using ancient oral microbiota
Q98885037	Investigation of a Staphylococcus argenteus Strain Involved in a Chronic Prosthetic-Joint Infection
Q95829824	Is Shiga Toxin-Producing Escherichia coli O45 No Longer a Food Safety Threat? The Danger is Still Out There
Q92635326	Isolation and Characterization T4- and T7-Like Phages that Infect the Bacterial Plant Pathogen Agrobacterium tumefaciens
Q117646246	Isolation and Characterization of Lytic Pseudomonas aeruginosa Bacteriophages Isolated from Sewage Samples from Tunisia
Q94515451	Isolation and Characterization of Two Klebsiella pneumoniae Phages Encoding Divergent Depolymerases
Q112283526	Isolation and Characterization of a Novel Temperate Escherichia coli Bacteriophage, Kapi1, Which Modifies the O-Antigen and Contributes to the Competitiveness of Its Host during Colonization of the Murine Gastrointestinal Tract
Q97527972	Isolation and Comparative Genomics of Mycoavidus sp. B2-EB Reveals Minimal Genomic Features Required by cultivable Burkholderiaceae-related Endofungal Bacterium
Q94602563	Isolation and characterization of a novel Escherichia coli O157:H7-specific phage as a biocontrol agent
Q104799467	Isolation and characterization of bacteriophages infecting Burkholderia glumae, the major causal agent of bacterial panicle blight in rice
Q91468773	Isolation and characterization of two lytic bacteriophages against Staphylococcus aureus from India: newer therapeutic agents against Bovine mastitis
Q101479182	Isolation and genomic characterization of the ibuprofen-degrading bacterium Sphingomonas strain MPO218
Q98212395	Isolation and plasmid characterisation of Salmonella enterica serovar Albany harbouring mcr-5 from retail chicken meat in Japan
Q92635568	Isolation of Four Lytic Phages Infecting Klebsiella pneumoniae K22 Clinical Isolates from Spain
Q90414239	Isolation of a Novel Jumbo Bacteriophage Effective Against Klebsiella aerogenes
Q102375413	Isolation, comparison of identification methods and antibiotic resistance of Cronobacter spp. in infant foods
Q93089224	Key evolutionary events in the emergence of a globally disseminated, carbapenem resistant clone in the Escherichia coli ST410 lineage
Q64091512	Klebsiella pneumoniae ST307 with bla South Africa, 2014-2016
Q104800653	Klebsiella virus UPM2146 lyses multiple drug-resistant Klebsiella pneumoniae in vitro and in vivo
Q112645415	Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes
Q120166481	Large Multicountry Outbreak of Invasive Listeriosis by a Listeria monocytogenes ST394 Clone Linked to Smoked Rainbow Trout, 2020 to 2021
Q90947155	Large Phenotypic and Genetic Diversity of Prophages Induced from the Fish Pathogen Vibrio anguillarum
Q115673171	Large-Scale Phylogenetic Analysis Reveals a New Genetic Clade among Escherichia coli O26 Strains
Q100383884	Latilactobacillus curvatus: A Candidate Probiotic with Excellent Fermentation Properties and Health Benefits
Q84964916	Leeuwenhoekiella aestuarii sp. nov., isolated from salt-water sediment and first insights in the genomes of Leeuwenhoekiella species
Q116498279	Limosilactobacillus walteri sp. nov., a novel probiotic antimicrobial lipopeptide-producing bacterium
Q96132358	Lineage specific evolution and gene flow in Listeria monocytogenes is independent of bacteriophages
Q114107525	Live cell dynamics of production, explosive release and killing activity of phage tail-like weapons for Pseudomonas kin exclusion
Q112767316	Living in a Puddle of Mud: Isolation and Characterization of Two Novel Caulobacteraceae Strains Brevundimonas pondensis sp. nov. and Brevundimonas goettingensis sp. nov.
Q112296124	Long-read-sequenced reference genomes of the seven major lineages of enterotoxigenic Escherichia coli (ETEC) circulating in modern time
Q91403510	Looking for the hidden: Characterization of lysogenic phages in potential pathogenic Vibrio species from the North Sea
Q115757102	Low prevalence of mobile colistin-resistance in U.S. meat, catfish, poultry and genomic characterization of a mcr-1 positive Escherichia coli strain
Q101159665	Lysogenization of a Lactococcal Host with Three Distinct Temperate Phages Provides Homologous and Heterologous Phage Resistance
Q91300351	Lytic KFS-SE2 phage as a novel bio-receptor for Salmonella Enteritidis detection
Q46253841	MVP: a microbe-phage interaction database.
Q91894324	Machine learning predicts new anti-CRISPR proteins
Q90327514	Machine-Learning Classification Suggests That Many Alphaproteobacterial Prophages May Instead Be Gene Transfer Agents
Q64271021	May the Phage be With You? Prophage-Like Elements in the Genomes of Soft Rot : spp. and spp
Q112697120	Mechanism for Cas4-assisted directional spacer acquisition in CRISPR-Cas
Q91453164	Metabolic Adaptation in Methicillin-Resistant Staphylococcus aureus Pneumonia
Q92188484	Metabolic Modeling Elucidates the Transactions in the Rumen Microbiome and the Shifts Upon Virome Interactions
Q57928568	Metagenome analysis of Russian and Georgian Pyophage cocktails and a placebo-controlled safety trial of single phage versus phage cocktail in healthy Staphylococcus aureus carriers
Q59069499	Methicillin-resistant Staphylococcus aureus alters cell wall glycosylation to evade immunity
Q90928482	Methylome Characterization of Burkholderia pseudomallei Strain 982 at Single-Base Resolution
Q102137329	Microbial Diversity and Phage-Host Interactions in the Georgian Coastal Area of the Black Sea Revealed by Whole Genome Metagenomic Sequencing
Q53685301	Microbial Diversity and Toxin Risk in Tropical Freshwater Reservoirs of Cape Verde.
Q60492741	Microbial diversity and toxin risk in tropical freshwater reservoirs of Cape Verde
Q110696306	Microbial diversity in a military impacted lagoon (Vieques, Puerto Rico) and description of “Candidatus Biekeibacterium resiliens” gen. nov., sp. nov. comprising a new bacterial family
Q91393026	Microbial risk factors for treatment failure of pivmecillinam in community-acquired urinary tract infections caused by ESBL-producing Escherichia coli
Q112758520	Microdiversity of Enterococcus faecalis isolates in cases of infective endocarditis: selection of non-synonymous mutations and large deletions is associated with phenotypic modifications
Q96433927	Microevolution and Gain or Loss of Mobile Genetic Elements of Outbreak-Related Listeria monocytogenes in Food Processing Environments Identified by Whole Genome Sequencing Analysis
Q92217859	Microfluidics-Based Enrichment and Whole-Genome Amplification Enable Strain-Level Resolution for Airway Metagenomics
Q90695999	Milk microbial composition of Brazilian dairy cows entering the dry period and genomic comparison between Staphylococcus aureus strains susceptible to the bacteriophage vB_SauM-UFV_DC4
Q57194713	Millennia of genomic stability within the invasive Para C Lineage ofSalmonella enterica
Q99565970	Mimicking prophage induction in the body: induction in the lab with pH gradients
Q97555503	Mini-Metagenomics and Nucleotide Composition Aid the Identification and Host Association of Novel Bacteriophage Sequences
Q63881023	Minimum Information about an Uncultivated Virus Genome (MIUViG)
Q114091648	Mining bacterial NGS data vastly expands the complete genomes of temperate phages
Q112283542	Mobile Genetic Elements Drive Antimicrobial Resistance Gene Spread in Pasteurellaceae Species
Q97644491	Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful?
Q93062424	Mobilome of Brevibacterium aurantiacum Sheds Light on Its Genetic Diversity and Its Adaptation to Smear-Ripened Cheeses
Q98176844	Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation
Q100300506	Molecular Characteristics and Zoonotic Potential of Salmonella Weltevreden From Cultured Shrimp and Tilapia in Vietnam and China
Q96438589	Molecular Characterization and Antimicrobial Susceptibilities of Nocardia Species Isolated from the Soil; A Comparison with Species Isolated from Humans
Q96603976	Molecular Characterization and Pathogenicity of Staphylococcus aureus Isolated from Benin-City, Nigeria
Q61444722	Molecular Characterization of Carbapenem Resistant Klebsiella pneumoniae and Klebsiella quasipneumoniae Isolated from Lebanon
Q97563030	Molecular Characterization of a Novel Lytic Enzyme LysC from Clostridium intestinale URNW and Its Antibacterial Activity Mediated by Positively Charged N-Terminal Extension
Q64228905	Molecular and Biological Characterization of Ralstonia Phage RsoM1USA, a New Species of , Isolated in the United States
Q97519160	Molecular and Genomic Characterization of PFAB2: A Non-virulent Bacillus anthracis Strain Isolated from an Indian Hot Spring
Q91037540	Molecular epidemiology of isolates with multiple mcr plasmids from a pig farm in Great Britain: the effects of colistin withdrawal in the short and long term
Q89957070	Molecular imprints of plant beneficial Streptomyces sp. AC30 and AC40 reveal differential capabilities and strategies to counter environmental stresses
Q99349072	Molecular interaction between methicillin-resistant Staphylococcus aureus (MRSA) and chicken breast reveals enhancement of pathogenesis and toxicity for food-borne outbreak
Q64905535	Mouse Vendor Influence on the Bacterial and Viral Gut Composition Exceeds the Effect of Diet.
Q63761813	Multidrug resistance and multivirulence plasmids in enterotoxigenic and hybrid Shiga toxin-producing/enterotoxigenic Escherichia coli isolated from diarrheic pigs in Switzerland
Q95848142	Multilevel genome typing: genomics-guided scalable resolution typing of microbial pathogens
Q58555225	Multipartite genomes and the sRNome in response to temperature stress of an Arctic Pseudoalteromonas fuliginea BSW20308
Q100436932	Mutation accumulation and horizontal gene transfer in Escherichia coli colonizing the gut of old mice
Q61802239	NGS-based phylogeny of diphtheria-related pathogenicity factors in different Corynebacterium spp. implies species-specific virulence transmission
Q42372931	Nanopore Long-Read Guided Complete Genome Assembly of Hydrogenophaga intermedia, and Genomic Insights into 4-Aminobenzenesulfonate, p-Aminobenzoic Acid and Hydrogen Metabolism in the Genus Hydrogenophaga.
Q92286699	Nanopore sequencing for fast determination of plasmids, phages, virulence markers, and antimicrobial resistance genes in Shiga toxin-producing Escherichia coli
Q98778194	Near-Complete Genome Sequences of a Wolbachia Strain Isolated from Diaphorina citri Kuwayama (Hemiptera: Liviidae)
Q99557422	New insights into the biodiversity of coliphages in the intestine of poultry
Q116263379	New perspectives on an old grouping: The genomic and phenotypic variability of Oxalobacter formigenes and the implications for calcium oxalate stone prevention
Q99213834	Newly Emerged Serotype 1c of Shigella flexneri: Multiple Origins and Changing Drug Resistance Landscape
Q112720648	Next-Generation Sequencing for Whole-Genome Characterization of Weissella cibaria UTNGt21O Strain Originated From Wild Solanum quitoense Lam. Fruits: An Atlas of Metabolites With Biotechnological Significance
Q38657588	Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
Q92561491	Not all Pseudomonas aeruginosa are equal: strains from industrial sources possess uniquely large multireplicon genomes
Q97420676	Novel Erwinia persicina Infecting Phage Midgardsormr38 Within the Context of Temperate Erwinia Phages
Q65002684	Novel Yersinia enterocolitica Prophages and a Comparative Analysis of Genomic Diversity.
Q117216033	Novel bacterial taxa in a minimal lignocellulolytic consortium and their potential for lignin and plastics transformation
Q120170543	Novel emm4 lineage associated with an upsurge in invasive group A streptococcal disease in the Netherlands, 2022
Q93235914	Novel insights into the enterotoxigenic potential and genomic background of Staphylococcus aureus isolated from raw milk
Q47139602	Novel large-scale chromosomal transfer in Bacteroides fragilis contributes to its pan-genome and rapid environmental adaptation.
Q115442439	Novel prophage-like sequences in Mycoplasma anserisalpingitidis
Q97526825	Novel xylanase producing Bacillus strain X2: molecular phylogenetic analysis and its application for production of xylooligosaccharides
Q61719021	On the (im)possibility to reconstruct plasmids from whole genome short-read sequencing data
Q33911242	On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires
Q89151947	Optimization of subculture and DNA extraction steps within the whole genome sequencing workflow for source tracking of Salmonella enterica and Listeria monocytogenes
Q90753478	Origin and Evolution of Hybrid Shiga Toxin-Producing and Uropathogenic Escherichia coli Strains of Sequence Type 141
Q113269492	Origin, Phylogeny, and Transmission of the Epidemic Clone ST208 of Carbapenem-Resistant Acinetobacter baumannii on a Global Scale
Q64238798	Orphan Genes Shared by Pathogenic Genomes Are More Associated with Bacterial Pathogenicity
Q96163227	Overall changes in the transcriptome of Escherichia coli O26:H11 induced by a subinhibitory concentration of ciprofloxacin
Q92074567	PHANOTATE: a novel approach to gene identification in phage genomes
Q47898909	PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes
Q64913131	PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning.
Q113167803	Pan-Genome Analysis of Delftia tsuruhatensis Reveals Important Traits Concerning the Genetic Diversity, Pathogenicity, and Biotechnological Properties of the Species
Q56395431	Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia
Q88870015	Pan-genomic approach shows insight of genetic divergence and pathogenic-adaptation of Pasteurella multocida
Q104111136	Pandemic Vibrio cholerae shuts down site-specific recombination to retain an interbacterial defence mechanism
Q89953018	Pantoea sp. P37 as a novel nonpathogenic host for the heterologous production of rhamnolipids
Q90260210	Parallel sequencing of Wolbachia wCer2 from donor and novel hosts reveals multiple incompatibility factors and genome stability after host transfers
Q110697036	Parvimonas parva sp. nov., derived from a human genito-urinary lesion
Q96587094	PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10
Q46278047	Pathogenicity of Human ST23 Streptococcus agalactiae to Fish and Genomic Comparison of Pathogenic and Non-pathogenic Isolates
Q115750010	Pathogenicity of Shiga toxin-producing Escherichia coli (STEC) from wildlife: Should we care?
Q115702809	Pathogenomes and variations in Shiga toxin production among geographically distinct clones of Escherichia coli O113:H21
Q94464356	Pathogenomes of Atypical Non-shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive Phylogenomic Analysis Using Closed Genomes
Q60938614	Pathogenomics of Virulence Traits of That Were Deemed Inconclusive by Traditional Experimental Approaches
Q111741827	Pedobacter fastidiosus sp. nov., isolated from glacial habitats of maritime Antarctica
Q38733894	Persistent Listeria monocytogenes strains isolated from mussel production facilities form more biofilm but are not linked to specific genetic markers
Q114197883	Persisting uropathogenic Escherichia coli lineages show signatures of niche-specific within-host adaptation mediated by mobile genetic elements
Q112722591	Pervasive prophage recombination occurs during evolution of spore-forming Bacilli
Q64388711	Phage Mu Gam protein promotes NHEJ in concert with ligase
Q90960641	Phage defense mechanisms and their genomic and phenotypic implications in the fish pathogen Vibrio anguillarum
Q47382973	Phage hunters: Computational strategies for finding phages in large-scale 'omics datasets.
Q83227515	Phage integration alters the respiratory strategy of its host
Q92157109	Phage tail-like particles are versatile bacterial nanomachines - A mini-review
Q64064350	Phage-Encoded LuxR-Type Receptors Responsive to Host-Produced Bacterial Quorum-Sensing Autoinducers
Q114872374	Phage-Encoded Sigma Factors Alter Bacterial Dormancy
Q112714782	Phage-Mediated Explosive Cell Lysis Induces the Formation of a Different Type of O-IMV in Shewanella vesiculosa M7^T
Q39310261	Phage-host associations in a full-scale activated sludge plant during sludge bulking
Q60949673	PhageWeb - Web Interface for Rapid Identification and Characterization of Prophages in Bacterial Genomes
Q93109078	Phages and Human Health: More Than Idle Hitchhikers
Q114191627	Phages carry interbacterial weapons encoded by biosynthetic gene clusters
Q64109044	Phages for Phage Therapy: Isolation, Characterization, and Host Range Breadth
Q52609381	Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes.
Q123140661	Pheno- and Genotyping of Three Novel Bacteriophage Genera That Target a Wheat Phyllosphere Sphingomonas Genus
Q97897950	Phenotypic and Genotypic Properties of Vibrio cholerae non-O1, non-O139 Isolates Recovered from Domestic Ducks in Germany
Q101469937	Phenotypic and genomic analysis of isopropanol and 1,3-propanediol producer Clostridium diolis DSM 15410
Q113181979	Phenotypic and genomic hallmarks of a novel, potentially pathogenic rapidly growing Mycobacterium species related to the Mycobacterium fortuitum complex
Q113181965	Phenotypic characterization and analysis of complete genomes of two distinct strains of the proposed species “L. swaminathanii”
Q92078843	Phigaro: high throughput prophage sequence annotation
Q112286826	Phylogenetic Distribution of WhiB- and Lsr2-Type Regulators in Actinobacteriophage Genomes
Q90461721	Phylogenetic Grouping of Human Ocular Escherichia coli Based on Whole-Genome Sequence Analysis
Q99716292	Phylogenetic and genomic analysis reveals high genomic openness and genetic diversity of Clostridium perfringens
Q92938981	Phylogenetic determinants of toxin gene distribution in genomes of Brevibacillus laterosporus
Q114092641	Phylogenomic analyses and host range prediction of cluster P mycobacteriophages
Q117369927	Phylogenomic diversity of species and other Gammaproteobacteria isolated from Pacific oysters () during a summer mortality outbreak
Q122713199	Phylogenomic investigation of an outbreak of fluoroquinolone-resistant Salmonella enterica subsp. enterica serovar Paratyphi A in Phnom Penh, Cambodia
Q118110131	Phylogenomics reveals insights into the functional evolution of the genus Agrobacterium and enables the description of Agrobacterium divergens sp. nov
Q115659967	Phylogeny and Potential Virulence of Cryptic Clade <i>Escherichia Coli</i> Species Complex Isolates Derived from an Arable Field Trial
Q112710531	Phylogeny and potential virulence of cryptic clade Escherichia coli species complex isolates derived from an arable field trial
Q100300542	Phylogeographical Analysis Reveals the Historic Origin, Emergence, and Evolutionary Dynamics of Methicillin-Resistant Staphylococcus aureus ST228
Q91643707	Piscirickettsia salmonis Cryptic Plasmids: Source of Mobile DNA and Virulence Factors
Q112276776	Plant pathogenic bacterium can rapidly evolve tolerance to an antimicrobial plant allelochemical
Q100503915	Plasmid diversity among genetically related Klebsiella pneumoniae blaKPC-2 and blaKPC-3 isolates collected in the Dutch national surveillance
Q112714489	Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation
Q101226482	Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo
Q94538269	Plasmidome of an environmental Acinetobacter lwoffii strain originating from a former gold and arsenic mine
Q112276645	Polyphasic Analysis Reveals Potential Petroleum Hydrocarbon Degradation and Biosurfactant Production by Rare Biosphere Thermophilic Bacteria From Deception Island, an Active Antarctic Volcano
Q112736264	Polyphasic Identification and Genomic Insights of Leptothermofonsia sichuanensis gen. sp. nov., a Novel Thermophilic Cyanobacteria Within Leptolyngbyaceae
Q112279988	Population Diversity of Antibiotic Resistant Enterobacterales in Samples From Wildlife Origin in Senegal: Identification of a Multidrug Resistance Transposon Carrying bla _CTX-M-15 in Escherichia coli
Q92602528	Population dynamics of an Escherichia coli ST131 lineage during recurrent urinary tract infection
Q91677272	Population structure and pangenome analysis of Enterobacter bugandensis uncover the presence of blaCTX-M-55, blaNDM-5 and blaIMI-1, along with sophisticated iron acquisition strategies
Q90199051	Potent CRISPR-Cas9 inhibitors from Staphylococcus genomes
Q93160632	Potential Interactions between Clade SUP05 Sulfur-Oxidizing Bacteria and Phages in Hydrothermal Vent Sponges
Q58559828	Potentially Mobile Denitrification Functional Genes Identified in sp. Strain TSH58
Q112711690	Prediction and Analysis in silico of Genomic Islands in Aeromonas hydrophila
Q98241872	Preliminary view of the global distribution and spread of the tet(X) family of tigecycline resistance genes
Q91282610	Prevalence, Distribution, and Phylogeny of Type Two Toxin-Antitoxin Genes Possessed by Cronobacter Species where C. sakazakii Homologs Follow Sequence Type Lineages
Q110697074	Prevotella illustrans sp. nov., derived from human oropharyngeal abscess puncture fluid
Q112754581	Probiotic and Antifungal Attributes of Levilactobacillus brevis MYSN105, Isolated From an Indian Traditional Fermented Food Pozha
Q100453776	Prolonged outbreak of multidrug-resistant Shigella sonnei harbouring blaCTX-M-27 in Victoria, Australia
Q90437976	ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database
Q115653256	Prophage Diversity Across Salmonella and Verotoxin-Producing Escherichia coli in Agricultural Niches of British Columbia, Canada
Q92203003	Prophage Hunter: an integrative hunting tool for active prophages
Q40963946	Prophage Integrase Typing Is a Useful Indicator of Genomic Diversity in Salmonella enterica
Q115757192	Prophage induction reduces Shiga toxin producing Escherichia coli (STEC) and Salmonella enterica on tomatoes and spinach: A model study
Q89766428	Prophage-Mediated Disruption of Genetic Competence in Staphylococcus pseudintermedius
Q57802938	Prophage-driven genomic structural changes promote Bartonella vertical evolution
Q104071581	Prophages and Past Prophage-Host Interactions Revealed by CRISPR Spacer Content in a Fish Pathogen
Q125755927	Prophages encoding human immune evasion cluster genes are enriched in isolated from chronic rhinosinusitis patients with nasal polyps
Q91061165	Prophages in Lactobacillus reuteri Are Associated with Fitness Trade-Offs but Can Increase Competitiveness in the Gut Ecosystem
Q59360029	Prophages-Prevalence, Chromosome Location and Major Genes Involved
Q50233600	Pseudomonas orientalis F9: A Potent Antagonist against Phytopathogens with Phytotoxic Effect in the Apple Flower.
Q120668620	Pseudomonas petrae sp. nov. isolated from regolith samples in Antarctica
Q91410167	Quantifying the forces that maintain prophages in bacterial genomes
Q90043873	Quorum Sensing and Metabolic State of the Host Control Lysogeny-Lysis Switch of Bacteriophage T1
Q91557277	RLP, a bacteriophage of the family Podoviridae, rescues mice from bacteremia caused by multi-drug-resistant Pseudomonas aeruginosa
Q108126755	Rapid discovery of novel prophages using biological feature engineering and machine learning
Q112805555	Rapid molecular evolution of Spiroplasma symbionts of Drosophila
Q96960136	Rapid spread of OXA-244-producing Escherichia coli ST38 in Germany: insights from an integrated molecular surveillance approach; 2017 to January 2020
Q112703467	Rates of evolutionary change of resident Escherichia coli O157:H7 differ within the same ecological niche
Q113959505	Rational construction of genome-reduced Burkholderiales chassis facilitates efficient heterologous production of natural products from proteobacteria
Q91298518	Reanalysis of Lactobacillus paracasei Lbs2 Strain and Large-Scale Comparative Genomics Places Many Strains into Their Correct Taxonomic Position
Q55346950	Reassessing the Role of Type II Toxin-Antitoxin Systems in Formation of Escherichia coli Type II Persister Cells.
Q112720532	Reconstructing Draft Genomes Using Genome Resolved Metagenomics Reveal Arsenic Metabolizing Genes and Secondary Metabolites in Fresh Water Lake in Eastern India
Q115666546	Recurrent bacteremia with a hypermucoviscous Escherichia coli isolated from a patient with perihilar cholangiocarcinoma: insights from a comprehensive genome-based analysis
Q91037698	Red-Brown Pigmentation of Acidipropionibacterium jensenii Is Tied to Haemolytic Activity and cyl-Like Gene Cluster
Q95261987	Reduced Genome of the Gut Symbiotic Bacterium "Candidatus Benitsuchiphilus tojoi" Provides Insight Into Its Possible Roles in Ecology and Adaptation of the Host Insect
Q59274011	Relating Phage Genomes to Population Structure: General Steps Using Whole-Genome Sequencing Data
Q64063720	Remarkable Genome Stability among emm1 Group A Streptococcus in Belgium over 19 Years
Q114092631	Replication-Dependent Organization Constrains Positioning of Long DNA Repeats in Bacterial Genomes
Q55265556	Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates.
Q93190408	Resistome, Mobilome and Virulome Analysis of Shewanella algae and Vibrio spp. Strains Isolated in Italian Aquaculture Centers
Q41995617	Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermedia.
Q90822629	Retrospective investigation of listeriosis outbreaks in small ruminants using different analytical approaches for whole genome sequencing-based typing of Listeria monocytogenes
Q96949886	Revealing 29 sets of independently modulated genes in Staphylococcus aureus, their regulators, and role in key physiological response
Q40059214	Review article: the human intestinal virome in health and disease
Q94957952	Role of enterotoxigenic Escherichia coli (ETEC) prophage in spreading antibiotic resistance in a porcine-derived environment
Q91790583	Rumen Virus Populations: Technological Advances Enhancing Current Understanding
Q43265067	Safety Assessment of Lactobacillus helveticus KLDS1.8701 Based on Whole Genome Sequencing and Oral Toxicity Studies.
Q96683651	Safety Assessment of a Nham Starter Culture Lactobacillus plantarum BCC9546 via Whole-genome Analysis
Q57114400	Safety assessment and functional properties of four enterococci strains isolated from regional Argentinean cheese
Q104559305	Safety demonstration of a microbial species for use in the food chain: Weissella confusa
Q112570316	Salmonella Salamae and S. Waycross isolated from Nile perch in Lake Victoria show limited human pathogenic potential
Q122659477	Salmonella Typhi whole genome sequencing in Rwanda shows a diverse historical population with recent introduction of haplotype H58
Q59349859	Salmonella enterica Phylogeny Based on Whole-Genome Sequencing Reveals Two New Clades and Novel Patterns of Horizontally Acquired Genetic Elements
Q54205011	Salmonella enterica Prophage Sequence Profiles Reflect Genome Diversity and Can Be Used for High Discrimination Subtyping.
Q112704830	Salmonella enterica subsp. enterica Welikade: guideline for phylogenetic analysis of serovars rarely involved in foodborne outbreaks
Q37650275	Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay
Q55316668	Screening and characterization of prophages in Desulfovibrio genomes.
Q96021088	Searching for a Bacteriophage Lysin to Treat Corynebacterium bovis in Immunocompromised Mice
Q92782801	Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments
Q100524202	Seeker: alignment-free identification of bacteriophage genomes by deep learning
Q104068278	Sequence of a Coxiella endosymbiont of the tick Amblyomma nuttalli suggests a pattern of convergent genome reduction in the Coxiella genus
Q99568871	Short k-mer abundance profiles yield robust machine learning features and accurate classifiers for RNA viruses
Q97521084	Single-Cell Genomics of Novel Actinobacteria With the Wood-Ljungdahl Pathway Discovered in a Serpentinizing System
Q61800366	Single-molecule sequencing detection of N6-methyladenine in microbial reference materials
Q37669800	Singleton Sequence Type 382, an Emerging Clonal Group of Listeria monocytogenes Associated with Three Multistate Outbreaks Linked to Contaminated Stone Fruit, Caramel Apples, and Leafy Green Salad
Q97067569	Source Tracking Based on Core Genome SNV and CRISPR Typing of Salmonella enterica Serovar Heidelberg Isolates Involved in Foodborne Outbreaks in Québec, 2012
Q112278997	Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences
Q112805558	Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
Q115410575	Sporofaciens musculi gen. nov., sp. nov., a novel bacterium isolated from the caecum of an obese mouse
Q90681014	Staphylococcus aureus ST398 Virulence Is Associated With Factors Carried on Prophage ϕSa3
Q63257320	Staphylococcus cornubiensis sp. nov., a member of the Staphylococcus intermedius Group (SIG)
Q117650745	Staphylococcus ratti sp. nov. Isolated from a Lab Rat
Q90047949	Strain- and Species-Level Variation in the Microbiome of Diabetic Wounds Is Associated with Clinical Outcomes and Therapeutic Efficacy
Q57812293	Strains with Different Mobilomes and from Distinct Environments Have Comparable Phenomes
Q92980750	Streamlined Pseudomonas taiwanensis VLB120 Chassis Strains with Improved Bioprocess Features
Q45765722	Streptococcus azizii sp. nov., isolated from naïve weanling mice
Q117661414	Streptococcus pneumoniae: a Plethora of Temperate Bacteriophages With a Role in Host Genome Rearrangement
Q47160684	Strong Genomic and Phenotypic Heterogeneity in the Aeromonas sobria Species Complex
Q46263873	Study of mesophilic Aeromonas salmonicida A527 strain sheds light on the species' lifestyles and taxonomic dilemma
Q116672869	Stutzerimonas decontaminans sp. nov. isolated from marine polluted sediments
Q47269615	Successive emergence of ceftazidime-avibactam resistance through distinct genomic adaptations in blaKPC-2-harboring Klebsiella pneumoniae ST307.
Q104578574	Survey and Sequence Characterization of Bovine Mastitis-Associated Escherichia coli in Dairy Herds
Q57456529	Suspected transmission and subsequent spread of MRSA from farmer to dairy cows
Q92040157	Switching on the light: using metagenomic shotgun sequencing to characterize the intestinal microbiome of Atlantic cod
Q123425466	Symbiopectobacterium purcellii, gen. nov., sp. nov., isolated from the leafhopper Empoasca decipiens
Q92659386	Symbiosis of a P2-family phage and deep-sea Shewanella putrefaciens
Q59345201	Systematic discovery of natural CRISPR-Cas12a inhibitors
Q112752998	Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins
Q97412090	Tackling Intrinsic Antibiotic Resistance in Serratia Marcescens with A Combination of Ampicillin/Sulbactam and Phage SALSA
Q92860977	Targeting of temperate phages drives loss of type I CRISPR-Cas systems
Q104514881	Taxonomic classification of strain PO100/5 shows a broader geographic distribution and genetic markers of the recently described Corynebacterium silvaticum
Q100991785	Temperate Bacteriophages (Prophages) in Pseudomonas aeruginosa Isolates Belonging to the International Cystic Fibrosis Clone (CC274)
Q109351732	Temperature-induced prophage dictates evolution of virulence in bacteria
Q33619362	Temporal Genomic Phylogeny Reconstruction Indicates a Geospatial Transmission Path of Salmonella Cerro in the United States and a Clade-Specific Loss of Hydrogen Sulfide Production
Q84962327	Tepidiforma bonchosmolovskayae gen. nov., sp. nov., a moderately thermophilic Chloroflexi bacterium from a Chukotka hot spring (Arctic, Russia), representing a novel class, Tepidiformia, which includes the previously uncultivated lineage OLB14
Q116498235	Terrisporobacter hibernicus sp. nov., isolated from bovine faeces in Northern Ireland
Q115652580	The Ability of Shiga Toxin-Producing Escherichia coli to Grow in Raw Cow’s Milk Stored at Low Temperatures
Q108591664	The Acquisition of Colistin Resistance Is Associated to the Amplification of a Large Chromosomal Region in Klebsiella pneumoniae kp52145
Q96636995	The Basis for Natural Multiresistance to Phage in Pseudomonas aeruginosa
Q52585302	The Butanol Producing Microbe Clostridium beijerinckii NCIMB 14988 Manipulated Using Forward and Reverse Genetic Tools.
Q90053629	The CRISPR-Cas systems were selectively inactivated during evolution of Bacillus cereus group for adaptation to diverse environments
Q62654994	The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease
Q91853578	The Emergence of Successful Streptococcus pyogenes Lineages through Convergent Pathways of Capsule Loss and Recombination Directing High Toxin Expression
Q46237905	The Emerging Fish Pathogen Flavobacterium spartansii Isolated from Chinook Salmon: Comparative Genome Analysis and Molecular Manipulation
Q41692213	The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen
Q100300541	The Genome of Staphylococcus epidermidis O47
Q112701517	The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
Q90629832	The Hypercomplex Genome of an Insect Reproductive Parasite Highlights the Importance of Lateral Gene Transfer in Symbiont Biology
Q115652341	The Importance of Shiga Toxin-Producing Escherichia coli O145:NM[H28]/H28 Infections in Argentina, 1998–2020
Q98224694	The Isolation and Genome Sequencing of Five Novel Bacteriophages From the Rumen Active Against Butyrivibrio fibrisolvens
Q92903281	The K46 and K5 capsular polysaccharides produced by Acinetobacter baumannii NIPH 329 and SDF have related structures and the side-chain non-ulosonic acids are 4-O-acetylated by phage-encoded O-acetyltransferases
Q92666241	The Landscape of Phenotypic and Transcriptional Responses to Ciprofloxacin in Acinetobacter baumannii: Acquired Resistance Alleles Modulate Drug-Induced SOS Response and Prophage Replication
Q41439465	The Mobilome; A Major Contributor to Escherichia coli stx2-Positive O26:H11 Strains Intra-Serotype Diversity
Q104516816	The Role of Petrimonas mucosa ING2-E5A^T in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
Q64080266	The bacteriocin from the prophylactic candidate Streptococcus suis 90-1330 is widely distributed across S. suis isolates and appears encoded in an integrative and conjugative element
Q89055271	The characteristics and comparative analysis of methanotrophs reveal genomic insights into Methylomicrobium sp. enriched from marine sediments
Q28818137	The complete genome sequence of Cronobacter sakazakii ATCC 29544(T), a food-borne pathogen, isolated from a child's throat
Q92392580	The complete genome sequence of the nitrile biocatalyst Rhodocccus rhodochrous ATCC BAA-870
Q95931415	The concerted action of two B3-like prophage genes exclude superinfecting bacteriophages by blocking DNA entry into Pseudomonas aeruginosa
Q62654995	The contribution of genetic variation of Streptococcus pneumoniae to the clinical manifestation of invasive pneumococcal disease
Q114600295	The diversity among the species Tetragenococcus halophilus including new isolates from a lupine seed fermentation
Q37563317	The driving force of prophages and CRISPR-Cas system in the evolution of Cronobacter sakazakii
Q114079322	The effect of a temperature‐sensitive prophage on the evolution of virulence in an opportunistic bacterial pathogen
Q47930590	The genome analysis of Oleiphilus messinensis ME102 (DSM 13489T) reveals backgrounds of its obligate alkane-devouring marine lifestyle.
Q90101011	The higher prevalence of extended spectrum beta-lactamases among Escherichia coli ST131 in Southeast Asia is driven by expansion of a single, locally prevalent subclone
Q115732237	The impact of genetic diversity on gene essentiality within the Escherichia coli species
Q92999145	The phytopathogenic nature of Dickeya aquatica 174/2 and the dynamic early evolution of Dickeya pathogenicity
Q94584453	The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals
Q90953614	The spinal cord-gut-immune axis as a master regulator of health and neurological function after spinal cord injury
Q95933828	The stepwise assembly of the neonatal virome is modulated by breastfeeding
Q111741665	Thiomicrorhabdus heinhorstiae sp. nov. and Thiomicrorhabdus cannonii sp. nov.: novel sulphur-oxidizing chemolithoautotrophs isolated from the chemocline of Hospital Hole, an anchialine sinkhole in Spring Hill, Florida, USA
Q111741642	Three Novel Bacteriophages, J5a, F16Ba, and z1a, Specific for Bacillus anthracis, Define a New Clade of Historical Wbeta Phage Relatives
Q91966380	Thriving in Wetlands: Ecophysiology of the Spiral-Shaped Methanotroph Methylospira mobilis as Revealed by the Complete Genome Sequence
Q115667485	To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131
Q47123789	Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria.
Q90312733	Toward a chimeric vaccine against multiple isolates of Mycobacteroides - An integrative approach
Q104607284	Tracing the active genetic diversity of Microcystis and Microcystis phage through a temporal survey of Taihu
Q92289146	Tracking short-term changes in the genetic diversity and antimicrobial resistance of OXA-232-producing Klebsiella pneumoniae ST14 in clinical settings
Q91992254	Tracking the environmental dissemination of carbapenem-resistant Klebsiella pneumoniae using whole genome sequencing
Q55363696	Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq.
Q64895161	Transcriptome analysis of a thermophilic and hydrogenogenic carboxydotroph Carboxydothermus pertinax.
Q91583769	Transduction as a Potential Dissemination Mechanism of a Clonal qnrB19-Carrying Plasmid Isolated From Salmonella of Multiple Serotypes and Isolation Sources
Q91632970	Transmission dynamics and control of multidrug-resistant Klebsiella pneumoniae in neonates in a developing country
Q115652996	Transmission of Similar Mcr-1 Carrying Plasmids among Different Escherichia coli Lineages Isolated from Livestock and the Farmer
Q98906710	Twentieth-century emergence of antimicrobial resistant human- and bovine-associated Salmonella enterica serotype Typhimurium lineages in New York State
Q47307905	Two Draft Genome Sequences of Chromobacterium violaceum Isolates from the Rio Negro
Q97550798	Two lineages of Pseudomonas aeruginosa filamentous phages - structural uniformity over integration preferences
Q111742056	Two new Rhizobiales species isolated from root nodules of common sainfoin ( Onobrychis viciifolia ) show different plant colonization strategies
Q104565936	Two unique prophages of "Candidatus Liberibacter asiaticus" strains from Pakistan
Q96822735	UPΦ phages, a new group of filamentous phages found in several members of Enterobacteriales
Q52652535	Unexpected diversity in the mobilome of a Pseudomonas aeruginosa strain isolated from a dental unit waterline revealed by SMRT Sequencing.
Q112286968	Unveiling Ecological and Genetic Novelty within Lytic and Lysogenic Viral Communities of Hot Spring Phototrophic Microbial Mats
Q90196633	Using the Endogenous CRISPR-Cas System of Heliobacterium modesticaldum To Delete the Photochemical Reaction Center Core Subunit Gene
Q104282877	Utilizing microbiome approaches to assist source tracking, treatment and prevention of COVID-19: Review and assessment
Q96298737	VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences
Q40223538	Variability and host density independence in inductions-based estimates of environmental lysogeny
Q120668427	Vibrio syngnathi sp. nov., a fish pathogen, isolated from the Kiel Fjord
Q38690628	VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
Q112617697	VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Q90666416	Viral DNA genomes in sera of farrowing sows with or without stillbirths
Q98499696	Viral elements and their potential influence on microbial processes along the permanently stratified Cariaco Basin redoxcline
Q89998673	Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles
Q96117344	Virulence Potential of a Multidrug-Resistant Escherichia coli Strain Belonging to the Emerging Clonal Group ST101-B1 Isolated from Bloodstream Infection
Q61797250	Virulence factor landscape of a Staphylococcus aureus sequence type 45 strain, MCRF184
Q95279043	Whole Genome Sequence Analysis and Population Genomics of Group A Streptococci
Q51783991	Whole Genome Sequence Analysis of CTX-M-15 Producing Klebsiella Isolates Allowed Dissecting a Polyclonal Outbreak Scenario.
Q98885409	Whole Genome Sequencing Reveals Virulence Potentials of Helicobacter pylori Strain KE21 Isolated from a Kenyan Patient with Gastric Signet Ring Cell Carcinoma
Q41352418	Whole Genome Sequencing of Danish Staphylococcus argenteus Reveals a Genetically Diverse Collection with Clear Separation from Staphylococcus aureus
Q38686444	Whole Genome Sequencing of Mycobacterium tuberculosis Isolates From Extrapulmonary Sites.
Q92106446	Whole Genome Sequencing-Based Comparison of Food Isolates of Cronobacter sakazakii
Q38760765	Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013.
Q91553126	Whole genome comparisons of Staphylococcus agnetis isolates from cattle and chickens
Q95649546	Whole genome sequence and comparative genome analyses of multi-resistant Staphylococcus warneri GD01 isolated from a diseased pig in China
Q37681661	Whole genome sequences of three Clade 3 Clostridium difficile strains carrying binary toxin genes in China
Q36406628	Whole genome sequencing analyses of Listeria monocytogenes that persisted in a milkshake machine for a year and caused illnesses in Washington State
Q100446686	Whole genome sequencing and de novo assembly of three virulent Indian isolates of Leptospira
Q115760259	Whole genome sequencing and in vitro activity data of Escherichia phage NTEC3 against multidrug-resistant Uropathogenic and extensively drug-resistant Uropathogenic E. coli isolates
Q112700815	Whole genome sequencing of cyanobacterium Nostoc sp. CCCryo 231-06 using microfluidic single cell technology
Q90029686	Whole genome sequencing provides genomic insights into three Morganella morganii strains isolated from bovine rectal swabs in Dhaka, Bangladesh
Q112717473	Whole genome sequencing reveals possible host species adaptation of Streptococcus dysgalactiae
Q55033515	Whole genome shotgun sequences of Streptococcus pyogenes causing acute pharyngitis from India.
Q123231197	Whole-Genome Sequence Comparisons of Listeria monocytogenes Isolated from Meat and Fish Reveal High Inter- and Intra-Sample Diversity
Q90780719	Whole-Genome Sequence of Escherichia coli Serotype O157:H7 Strain ATCC 43888
Q43826650	Whole-Genome Sequence of Escherichia coli Serotype O157:H7 Strain B6914-ARS.
Q33815370	Whole-Genome Sequence of the Bacteriophage-Sensitive Strain Campylobacter jejuni NCTC12662.
Q60045050	Whole-Genome Sequences of Corynebacterium macginleyi CCUG 32361T and Clinical Isolates NML 080212 and NML 120205
Q37621759	Whole-Genome Sequences of Four Corynebacterium CDC Group F-1 Strains Isolated from Urine
Q92351933	Whole-Genome Sequences of Four Indian Isolates of Azospirillum brasilense
Q59813782	Whole-Genome Sequences of Propionibacterium australiense NML (LCDC) 98A072 and NML (LCDC) 98A078, Associated with Granulomatous Bovine Lesions
Q64094350	Whole-Genome Sequences of Seven Listeria monocytogenes Strains from Different Stages of a Poultry Meat Production Chain
Q89453604	Whole-Genome Sequencing Confirms the Coexistence of Different Colonizing Group B Streptococcus Isolates Underscored by CRISPR Typing
Q55423751	Whole-Genome Sequencing and Comparative Genome Analysis Provided Insight into the Predatory Features and Genetic Diversity of Two Bdellovibrio Species Isolated from Soil.
Q61444075	Whole-Genome Sequencing of Legionella jordanis Strains NML 060502 and NML 130005, Recovered from a Lower Respiratory Tract Infection and Water, Respectively
Q33658070	Whole-Genome Sequencing of Seven Strains of Staphylococcus lugdunensis Allows Identification of Mobile Genetic Elements
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P8978	DBLP publication ID	journals/nar/ArndtGMSPLW16
P356	DOI	10.1093/NAR/GKW387
P932	PMC publication ID	4987931
P698	PubMed publication ID	27141966
P5875	ResearchGate publication ID	301832049

P50	author	David Wishart	Q27887604
P2093	author name string	Allison Pon
		Yongjie Liang
		David Arndt
		Tanvir Sajed
		Jason R Grant
		Ana Marcu
P2860	cites work	Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences	Q80146363
		BLAST+: architecture and applications	Q21284368
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		Basic local alignment search tool	Q25938991
		Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges	Q28661523
		CD-HIT: accelerated for clustering the next-generation sequencing data	Q29616664
		RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data	Q34062055
		FragGeneScan: predicting genes in short and error-prone reads	Q34298246
		Next-generation sequencing transforms today's biology	Q34731728
		RefSeq: an update on mammalian reference sequences	Q35047930
		PHAST: a fast phage search tool	Q35075734
		Prophages and bacterial genomics: what have we learned so far?	Q35187156
		VirSorter: mining viral signal from microbial genomic data	Q35650782
		PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies	Q36228443
		Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus.	Q46901842
		Prophinder: a computational tool for prophage prediction in prokaryotic genomes.	Q51895172
P275	copyright license	Creative Commons Attribution-NonCommercial 4.0 International	Q34179348
P6216	copyright status	copyrighted	Q50423863
P433	issue	W1
P407	language of work or name	English	Q1860
P921	main subject	search tool	Q60461507
P304	page(s)	W16-21
P577	publication date	2016-05-03
P1433	published in	Nucleic Acids Research	Q135122
P1476	title	PHASTER: a better, faster version of the PHAST phage search tool
P478	volume	44

PHASTER: a better, faster version of the PHAST phage search tool

scientific article published on 03 May 2016

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