Genome and proteome of the chlorophyll f-producing cyanobacterium Halomicronema hongdechloris: adaptative proteomic shifts under different light conditions

scientific article published on 12 March 2019

Genome and proteome of the chlorophyll f-producing cyanobacterium Halomicronema hongdechloris: adaptative proteomic shifts under different light conditions is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1112738986
P356DOI10.1186/S12864-019-5587-3
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/s12864-019-5587-3
P932PMC publication ID6416890
P698PubMed publication ID30866821

P50authorMin ChenQ6862521
Robert WillowsQ30524426
Miguel A Hernández-PrietoQ42323450
P2093author name stringYaqiong Li
Patrick C Loughlin
P2860cites workEnergy transfer in the chlorophyll f-containing cyanobacterium, Halomicronema hongdechloris, analyzed by time-resolved fluorescence spectroscopies.Q50452425
Chlorophyll f and chlorophyll d are produced in the cyanobacterium Chlorogloeopsis fritschii when cultured under natural light and near-infrared radiation.Q50461280
Energy transfer processes in chlorophyll f-containing cyanobacteria using time-resolved fluorescence spectroscopy on intact cells.Q50472370
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Viable cyanobacteria in the deep continental subsurfaceQ57061971
Photosynthesis supported by a chlorophyll f-dependent, entropy-driven uphill energy transfer in Halomicronema hongdechloris cells adapted to far-red lightQ59056383
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Gap5--editing the billion fragment sequence assemblyQ24625138
Characterization of red-shifted phycobilisomes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechlorisQ27702538
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Artemis: sequence visualization and annotationQ27861024
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Web Apollo: a web-based genomic annotation editing platformQ28658396
A model for random sampling and estimation of relative protein abundance in shotgun proteomicsQ29547316
TANDEM: matching proteins with tandem mass spectraQ29615238
Prokka: rapid prokaryotic genome annotationQ29616643
Fast algorithms for large-scale genome alignment and comparisonQ29618357
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Present and future global distributions of the marine Cyanobacteria Prochlorococcus and SynechococcusQ30632243
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A red-shifted chlorophyll.Q34023550
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A cyanobacterium that contains chlorophyll f--a red-absorbing photopigment.Q34337553
Ecology: a niche for cyanobacteria containing chlorophyll d.Q34397340
Occurrence of Far-Red Light Photoacclimation (FaRLiP) in Diverse CyanobacteriaQ35333936
Chlorophyll f-driven photosynthesis in a cavernous cyanobacteriumQ35558761
Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomesQ36509481
Molecular mechanism for the umami taste synergismQ37023120
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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).Q37661996
Expanding the solar spectrum used by photosynthesis.Q37865156
Strategies for psbA gene expression in cyanobacteria, green algae and higher plants: from transcription to PSII repairQ37874736
Spectral expansion and antenna reduction can enhance photosynthesis for energy productionQ38100445
The highly abundant chlorophyll-protein complex of iron-deficient Synechococcus sp. PCC7942 (CP43') is encoded by the isiA geneQ38314887
Adaptive and acclimative responses of cyanobacteria to far-red lightQ38559150
Light regulation of pigment and photosystem biosynthesis in cyanobacteriaQ39229142
Optimization and effects of different culture conditions on growth of Halomicronema hongdechloris - a filamentous cyanobacterium containing chlorophyll f.Q39234127
Growth phase- and cell division-dependent activation and inactivation of the {sigma}32 regulon in Escherichia coliQ43053359
Sequence variation at the oxygen-evolving centre of photosystem II: a new class of 'rogue' cyanobacterial D1 proteinsQ44029692
Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light.Q44095175
The C21-formyl group in chlorophyll f originates from molecular oxygen.Q46296332
Subcellular pigment distribution is altered under far-red light acclimation in cyanobacteria that contain chlorophyll f.Q47819238
A niche for cyanobacteria producing chlorophyll f within a microbial mat.Q48002589
Far-red light photoacclimation (FaRLiP) in Synechococcus sp. PCC 7335. II.Characterization of phycobiliproteins produced during acclimation to far-red lightQ48357465
PsbT polypeptide is required for efficient repair of photodamaged photosystem II reaction center.Q49164684
Light-dependent chlorophyll f synthase is a highly divergent paralog of PsbA of photosystem II.Q50235879
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesMUMmerQ6719063
MIRAQ114076742
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectbiotechnologyQ7108
CyanobacteriaQ93315
P304page(s)207
P577publication date2019-03-12
P1433published inBMC GenomicsQ15765854
P1476titleGenome and proteome of the chlorophyll f-producing cyanobacterium Halomicronema hongdechloris: adaptative proteomic shifts under different light conditions
P478volume20

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cites work (P2860)
Q92815354Comprehensive Analyses of Cytochrome P450 Monooxygenases and Secondary Metabolite Biosynthetic Gene Clusters in Cyanobacteria
Q111741667Kovacikia minuta sp. nov. (Leptolyngbyaceae, Cyanobacteria), a new freshwater chlorophyll f ‐producing cyanobacterium
Q98177240Opportunities and challenges for assigning cofactors in cryo-EM density maps of chlorophyll-containing proteins
Q92610130Structural basis for the adaptation and function of chlorophyll f in photosystem I

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