Protein folding in the cell envelope of Escherichia coli.

scientific article

Protein folding in the cell envelope of Escherichia coli. is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1017168674
P356DOI10.1038/NMICROBIOL.2016.107
P698PubMed publication ID27573113

P50authorAnastassios EconomouQ42580518
Spyridoula KaramanouQ47434224
Jozefien De GeyterQ88226630
P2093author name stringAlexandra Tsirigotaki
Georgia Orfanoudaki
Valentina Zorzini
P2860cites workSCOP2 prototype: a new approach to protein structure miningQ22061728
Structural and energetic basis of folded-protein transport by the FimD usherQ24616003
Type V secretion: mechanism(s) of autotransport through the bacterial outer membraneQ24621416
The Escherichia coli peripheral inner membrane proteomeQ36666333
Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequencesQ24644640
What is the total number of protein molecules per cell volume? A call to rethink some published valuesQ26782007
Disulfide bond formation in the bacterial periplasm: major achievements and challenges aheadQ26823827
Assembly of β-barrel proteins into bacterial outer membranesQ26998912
The Sec-dependent pathwayQ27010633
Core structure of the outer membrane lipoprotein from Escherichia coli at 1.9 A resolutionQ27622792
Solution structure of Apo Cu,Zn superoxide dismutase: role of metal ions in protein foldingQ27641822
Structural and functional studies of FkpA from Escherichia coli, a cis/trans peptidyl-prolyl isomerase with chaperone activityQ27642778
Fiber formation across the bacterial outer membrane by the chaperone/usher pathwayQ27650634
Structural basis for the regulated protease and chaperone function of DegPQ27650659
Crystal Structure of Colicin M, a Novel Phosphatase Specifically Imported by Escherichia coli>Q27651267
Protein-folding location can regulate manganese-binding versus copper- or zinc-bindingQ27652637
The prolyl isomerase domain of PpiD fromEscherichia colishows a parvulin fold but is devoid of catalytic activityQ27658010
Genetic selection designed to stabilize proteins uncovers a chaperone called SpyQ27666964
Molecular Adaptation of the DegQ Protease to Exert Protein Quality Control in the Bacterial Cell EnvelopeQ27670477
Assembly of the Type II Secretion System such as Found in Vibrio cholerae Depends on the Novel Pilotin AspSQ27675923
Newly folded substrates inside the molecular cage of the HtrA chaperone DegQQ27676751
Intrinsically Disordered Protein Threads Through the Bacterial Outer-Membrane Porin OmpFQ27678845
A protein export pathway involving Escherichia coli porinsQ27679435
Quality control of disulfide bond formation in pilus subunits by the chaperone FimCQ27681723
The structural basis of autotransporter translocation by TamAQ27686750
Structural basis of outer membrane protein insertion by the BAM complexQ27704064
The structure of glutamine-binding protein complexed with glutamine at 1.94 A resolution: comparisons with other amino acid binding proteinsQ27756774
Bacterial amyloid formation: structural insights into curli biogensisQ28082740
Production of Biopharmaceuticals in E. coli: Current Scenario and Future PerspectivesQ28083443
From Levinthal to pathways to funnelsQ28300934
The SurA periplasmic PPIase lacking its parvulin domains functions in vivo and has chaperone activityQ28354278
Feeling the hidden mechanical forces in lipid bilayer is an original senseQ28658571
Molecular chaperones in protein folding and proteostasisQ29547715
Outer membrane protein biogenesis in Gram-negative bacteriaQ30152824
Impact of holdase chaperones Skp and SurA on the folding of β-barrel outer-membrane proteinsQ30152825
A novel pathway for outer membrane protein biogenesis in Gram-negative bacteriaQ30152910
Assembly of the secretion pores GspD, Wza and CsgG into bacterial outer membranes does not require the Omp85 proteins BamA or TamA.Q30152931
Looks can be deceiving: recent insights into the mechanism of protein secretion by the autotransporter pathway.Q30152947
The β-barrel membrane protein insertase machinery from Gram-negative bacteriaQ30152967
Detecting envelope stress by monitoring β-barrel assembly.Q30153263
Structure of the nonameric bacterial amyloid secretion channelQ30153286
Structural and mechanistic insights into the bacterial amyloid secretion channel CsgGQ30153336
Lateral opening and exit pore formation are required for BamA functionQ30153373
Outer membrane β-barrel protein folding is physically controlled by periplasmic lipid head groups and BamA.Q30153415
DegP primarily functions as a protease for the biogenesis of β-barrel outer membrane proteins in the Gram-negative bacterium Escherichia coli.Q30153460
Stepwise folding of an autotransporter passenger domain is not essential for its secretionQ30153486
Protease homolog BepA (YfgC) promotes assembly and degradation of β-barrel membrane proteins in Escherichia coliQ30153518
Autotransporter secretion: varying on a theme.Q30155115
The essential β-barrel assembly machinery complex components BamD and BamA are required for autotransporter biogenesisQ30155532
Lipoprotein sorting in bacteria.Q30155534
Reconstitution of outer membrane protein assembly from purified componentsQ30156906
Interaction of an autotransporter passenger domain with BamA during its translocation across the bacterial outer membrane.Q30157080
Roles of periplasmic chaperone proteins in the biogenesis of serine protease autotransporters of EnterobacteriaceaeQ30157137
Predicting weakly stable regions, oligomerization state, and protein-protein interfaces in transmembrane domains of outer membrane proteinsQ30157187
Folding and trimerization of signal sequence-less mature TolC in the cytoplasm of Escherichia coliQ30157290
Model of mouth-to-mouth transfer of bacterial lipoproteins through inner membrane LolC, periplasmic LolA, and outer membrane LolB.Q30157322
Beta-barrel proteins that reside in the Escherichia coli outer membrane in vivo demonstrate varied folding behavior in vitroQ30157632
Crystal structure of Skp, a prefoldin-like chaperone that protects soluble and membrane proteins from aggregationQ30163883
Assembly of TolC, a Structurally Unique and Multifunctional Outer Membrane Protein of Escherichia coli K-12Q30164429
Membrane protein folding on the example of outer membrane protein A of Escherichia coli.Q30164479
The Periplasmic Molecular Chaperone Protein SurA Binds a Peptide Motif That Is Characteristic of Integral Outer Membrane ProteinsQ30164487
Folding and membrane insertion of the trimeric beta-barrel protein OmpF.Q30177043
The role of calcium in the conformational dynamics and thermal stability of the D-galactose/D-glucose-binding protein from Escherichia coli.Q30351181
The periplasmic Escherichia coli peptidylprolyl cis,trans-isomerase FkpA. I. Increased functional expression of antibody fragments with and without cis-prolines.Q30854397
Selection for a periplasmic factor improving phage display and functional periplasmic expressionQ32066800
Identification of potential substrate proteins for the periplasmic Escherichia coli chaperone Skp.Q33383997
Characterization of the Cpx regulon in Escherichia coli strain MC4100.Q33395214
Global analysis of extracytoplasmic stress signaling in Escherichia coliQ33504535
Protein refolding by pH-triggered chaperone binding and releaseQ33577469
Signal peptides are allosteric activators of the protein translocaseQ33662560
Decorating microbes: surface display of proteins on Escherichia coliQ33767417
The bacterial cell envelopeQ33800394
Zinc-dependent protein foldingQ33878311
A primary role for disulfide formation in the productive folding of prokaryotic Cu,Zn-superoxide dismutaseQ33931193
Secretory and extracellular production of recombinant proteins using Escherichia coliQ33976034
Dynamic interaction of the sec translocon with the chaperone PpiDQ33985391
Novel proteomic tools reveal essential roles of SRP and importance of proper membrane protein biogenesisQ34059311
Periplasmic peptidyl prolyl cis-trans isomerases are not essential for viability, but SurA is required for pilus biogenesis in Escherichia coliQ34124391
Role of cofactors in protein foldingQ34602512
Proteome-wide subcellular topologies of E. coli polypeptides database (STEPdb).Q34635044
Expression of the endogenous type II secretion pathway in Escherichia coli leads to chitinase secretion.Q34685284
Covalent attachment of proteins to peptidoglycan.Q34749060
Detecting folding intermediates of a protein as it passes through the bacterial translocation channelQ35004080
How Co-translational Folding of Multi-domain Protein Is Affected by Elongation Schedule: Molecular SimulationsQ35686986
Sequence analysis of bacterial redox enzyme maturation proteins (REMPs).Q35815031
Protein misfolding occurs by slow diffusion across multiple barriers in a rough energy landscapeQ35845795
The E. coli CsgB nucleator of curli assembles to β-sheet oligomers that alter the CsgA fibrillization mechanismQ35922016
pH of the cytoplasm and periplasm of Escherichia coli: rapid measurement by green fluorescent protein fluorimetryQ35949254
Control of DegP-dependent degradation of c-type cytochromes by heme and the cytochrome c maturation system in Escherichia coliQ35949562
Type I secretion in gram-negative bacteria.Q35951967
Beyond transcription--new mechanisms for the regulation of molecular chaperonesQ36069364
Cloning, purification, crystallization and preliminary X-ray diffraction studies of Escherichia coli PapD-like protein (EcpD).Q36143563
Proteomic study and marker protein identification of Caenorhabditis elegans lipid dropletsQ36144142
Lipids assist the membrane insertion of a BAM-independent outer membrane proteinQ36158729
Reconstitution of a nanomachine driving the assembly of proteins into bacterial outer membranesQ36248731
Solving the membrane protein folding problemQ36327794
Curli biogenesis and functionQ36480477
Membrane protein thermodynamic stability may serve as the energy sink for sorting in the periplasmQ36692899
Substrate protein folds while it is bound to the ATP-independent chaperone SpyQ36843657
Autotransporters: The Cellular Environment Reshapes a Folding Mechanism to Promote Protein TransportQ36846535
Deuterium Labeling Together with Contrast Variation Small-Angle Neutron Scattering Suggests How Skp Captures and Releases Unfolded Outer Membrane ProteinsQ37019529
Use of folding modulators to improve heterologous protein production in Escherichia coli.Q37097393
Role for Skp in LptD assembly in Escherichia coliQ37124929
Structural plasticity of an acid-activated chaperone allows promiscuous substrate bindingQ37138591
The perspectives of studying multi-domain protein folding.Q37381955
Outer-membrane vesicles from Gram-negative bacteria: biogenesis and functionsQ37641231
Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology.Q37773394
Type IV secretion systems: versatility and diversity in functionQ37774038
Swimming against the tide: progress and challenges in our understanding of colicin translocationQ37808099
Bacterial outer membrane vesicles in disease and preventive medicineQ37820396
Protein quality control in the bacterial periplasmQ37884601
Intrinsically disordered proteins undergo and assist folding transitions in the proteome.Q38059042
Breaking on through to the other side: protein export through the bacterial Sec system.Q38065265
Unusual biophysics of intrinsically disordered proteinsQ38069936
Biocatalysis with immobilized Escherichia coliQ38072332
Protein translocation across the inner membrane of Gram-negative bacteria: the Sec and Tat dependent protein transport pathways.Q38097261
The molecular dissection of the chaperone-usher pathwayQ38154006
Everything old is new again: an update on current research on the Cpx envelope stress responseQ38159109
Folding mechanisms of periplasmic proteinsQ38163277
Mechanism and structure of the bacterial type IV secretion systemsQ38175753
Type II secretion system: a magic beanstalk or a protein escalatorQ38175754
The membrane insertase YidC.Q38177989
Co-translational protein targeting to the bacterial membraneQ38186912
Antibiotic targeting of the bacterial secretory pathway.Q38188773
Protein transport by the bacterial Tat pathwayQ38192369
SecA-mediated targeting and translocation of secretory proteins.Q38192370
Mechanistic studies of the biogenesis and folding of outer membrane proteins in vitro and in vivo: what have we learned to date?Q38194733
Bacterial whole-cell biocatalysts by surface display of enzymes: toward industrial application.Q38237971
Molecular simulations of metal-coupled protein foldingQ38293694
SecD is involved in the release of translocated secretory proteins from the cytoplasmic membrane of Escherichia coliQ38322783
Macromolecular crowding: Macromolecules friend or foe.Q38470900
Secretion systems in Gram-negative bacteria: structural and mechanistic insights.Q38482854
Type III secretion systems: the bacterial flagellum and the injectisomeQ38586932
Type III Secretion: Building and Operating a Remarkable Nanomachine.Q38621246
Aim, Load, Fire: The Type VI Secretion System, a Bacterial Nanoweapon.Q38628417
Type VI secretion and anti-host effectorsQ38684791
Discovery of an archetypal protein transport system in bacterial outer membranes.Q39370957
Secretion of curli fibre subunits is mediated by the outer membrane-localized CsgG proteinQ39620322
Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities.Q39722282
Rapid label-free quantitative analysis of the E. coli BL21(DE3) inner membrane proteomeQ40432637
Effect of crowding by Ficolls on OmpA and OmpT refolding and membrane insertionQ41583523
The periplasmic folding of a cysteineless autotransporter passenger domain interferes with its outer membrane translocationQ41671872
Cofactor effects on the protein folding reaction: acceleration of alpha-lactalbumin refolding by metal ionsQ41837248
Identification of putative substrates for the periplasmic chaperone YfgM in Escherichia coli using quantitative proteomicsQ41883371
Bacterial surface proteins and vaccinesQ42100644
The Salmonella FlgA protein, a putativeve periplasmic chaperone essential for flagellar P ring formationQ42488636
Use of thioredoxin as a reporter to identify a subset of Escherichia coli signal sequences that promote signal recognition particle-dependent translocationQ42723141
A non-classical assembly pathway of Escherichia coli pore-forming toxin cytolysin A.Q42905558
Periplasmic chaperone FkpA is essential for imported colicin M toxicityQ43211287
The periplasmic chaperone Skp facilitates targeting, insertion, and folding of OmpA into lipid membranes with a negative membrane surface potentialQ43271459
Solubilization of protein aggregates by the acid stress chaperones HdeA and HdeB.Q46687850
Equilibrium folding of pro-HlyA from Escherichia coli reveals a stable calcium ion dependent folding intermediateQ46889399
A temperature-dependent switch from chaperone to protease in a widely conserved heat shock protein.Q47348771
Type VII secretion--mycobacteria show the way.Q48689947
Vesicle-mediated export and assembly of pore-forming oligomers of the enterobacterial ClyA cytotoxinQ50102555
Immunization with Escherichia coli outer membrane vesicles protects bacteria-induced lethality via Th1 and Th17 cell responses.Q53115452
Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli.Q53530186
Folding and assembly of bacterial alkaline phosphatase in vitro and in vivo.Q54242630
Conformation and dynamics of the periplasmic membrane-protein-chaperone complexes OmpX-Skp and tOmpA-Skp.Q54303131
Pathways of colicin import: utilization of BtuB, OmpF porin and the TolC drug-export protein.Q54322880
A genetically incorporated crosslinker reveals chaperone cooperation in acid resistance.Q54353719
The periplasmic chaperone PpiD interacts with secretory proteins exiting from the SecYEG translocon.Q54423305
Characterization of the chaperone-like activity of HtrA (DegP) protein from Escherichia coli under the conditions of heat shock.Q54441860
A system for concomitant overexpression of four periplasmic folding catalysts to improve secretory protein production in Escherichia coli.Q54464752
A third envelope stress signal transduction pathway in Escherichia coli.Q54537447
A periplasmic protein (Skp) of Escherichia coli selectively binds a class of outer membrane proteins.Q54592701
The periplasmic Escherichia coli peptidylprolyl cis,trans-isomerase FkpA. II. Isomerase-independent chaperone activity in vitroQ56896185
Periplasmic space and the concept of the periplasmQ68055318
Biopharmaceutical benchmarks 2014Q70909584
Characterization of the Escherichia coli sigma E regulonQ73684799
Electrostatic contribution to the thermodynamic and kinetic stability of the homotrimeric coiled coil Lpp-56: A computational studyQ80867942
Sorting of an integral outer membrane protein via the lipoprotein-specific Lol pathway and a dedicated lipoprotein pilotinQ83454751
P433issue8
P921main subjectprotein foldingQ847556
Escherichia coliQ25419
P304page(s)16107
P577publication date2016-07-26
P1433published inNature MicrobiologyQ23022567
P1476titleProtein folding in the cell envelope of Escherichia coli
P478volume1

Reverse relations

cites work (P2860)
Q57788607Breaching the wall
Q38989842Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI.
Q45944000Effective prediction of bacterial type IV secreted effectors by combined features of both C-termini and N-termini.
Q92510993Enhancing Recombinant Protein Yields in the E. coli Periplasm by Combining Signal Peptide and Production Rate Screening
Q89737499Escherichia coli Can Adapt Its Protein Translocation Machinery for Enhanced Periplasmic Recombinant Protein Production
Q54242376Heterologous Complementation Studies With the YscX and YscY Protein Families Reveals a Specificity for Yersinia pseudotuberculosis Type III Secretion.
Q47434181Hierarchical protein targeting and secretion is controlled by an affinity switch in the type III secretion system of enteropathogenic Escherichia coli.
Q38670395Identification of a Large Family of Slam-Dependent Surface Lipoproteins in Gram-Negative Bacteria
Q42290713Identification of specific posttranslational O-mycoloylations mediating protein targeting to the mycomembrane
Q92867260Inner Membrane Translocases and Insertases
Q38728723MatureP: prediction of secreted proteins with exclusive information from their mature regions.
Q47133897Outer membrane protein folding from an energy landscape perspective
Q42580446Preprotein mature domains contain translocase targeting signals that are essential for secretion
Q39021695Protein export through the bacterial Sec pathway.
Q92565853Structural Basis of the Subcellular Topology Landscape of Escherichia coli
Q40115920Structural basis for substrate selection by the translocation and assembly module of the β-barrel assembly machinery
Q39371081Super-Resolution Imaging of Protein Secretion Systems and the Cell Surface of Gram-Negative Bacteria
Q52720128Surface display for metabolic engineering of industrially important acetic acid bacteria.
Q92867221The Periplasmic Chaperones Skp and SurA
Q30152728The modular nature of the β-barrel assembly machinery, illustrated in Borrelia burgdorferi
Q30152662The β-barrel assembly machinery in motion

Search more.