Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population

scientific article published on 5 January 2017

Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/HMG/DDW406
P698PubMed publication ID28062665

P50authorShinji UemotoQ91614513
Shintaro YagiQ48223820
Atsushi NaganumaQ57451392
Kazuaki ChayamaQ87781872
Norihiro KokudoQ88727177
P2093author name stringMinoru Nakamura
Yoshihiko Maehara
Atsushi Tanaka
Masashi Mizokami
Osamu Yokosuka
Tatsuo Kanda
Kazuhiko Nakao
Kenichi Harada
Kiyoshi Migita
Kaname Yoshizawa
Michio Yasunami
Takafumi Ichida
Masanori Abe
Yoshiyuki Ueno
Kaname Kojima
Masao Nagasaki
Masahiro Kikuchi
Shuichi Kaneko
Yosuke Kawai
Motoyuki Kohjima
Tomohiro Tanaka
Makoto Nakamuta
Masahiro Ito
Shotaro Sakisaka
Atsumasa Komori
Hiromasa Ohira
Masataka Seike
Kazuhide Yamamoto
Masao Honda
Shinji Shimoda
Hitomi Nakamura
Katsushi Tokunaga
Hajime Takikawa
Hiroshi Mano
Minae Kawashima
Nao Nishida
Kazumoto Murata
Naohiko Masaki
Hidetaka Shibata
Hirotoshi Ebinuma
Masaru Harada
Masaaki Shimada
Takashi Himoto
Hiroto Egawa
Toyokichi Muro
Tsutomu Yamashita
Satoru Joshita
Takeji Umemura
Hiroshi Yatsuhashi
Yoshihiro Aiba
Hiromi Ishibashi
Mikio Zeniya
Satoshi Yamagiwa
Ken Shirabe
Kiyoshi Furuta
Makiko Taniai
Haruhiro Yamashita
Akira Mori
Fujio Makita
Hideo Nishimura
Keisuke Ario
Seigo Abiru
Shinya Nagaoka
Yasuhiro Miyake
Toshiki Nikami
Etsuko Hashimoto
Noboru Hirashima
Yoko Nakamura
Toshiki Komeda
Yuki Hitomi
Kazuhiko Yamauchi
Nobuyoshi Fukushima
Hirotaka Kouno
Hiroshi Kouno
Eiichi Takesaki
Hajime Ota
Kazuhiro Sugi
Kouki Matsushita
Michio Senju
Sumito Tamura
Tatsuji Komatsu
Yukio Ohara
Naohiro Takahashi
P2860cites workA flexible and accurate genotype imputation method for the next generation of genome-wide association studiesQ21129496
Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variantsQ24617796
Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosisQ24633290
Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variantsQ24633806
Mapping short DNA sequencing reads and calling variants using mapping quality scoresQ24644612
Japanese population structure, based on SNP genotypes from 7003 individuals compared to other ethnic groups: effects on population-based association studiesQ24657654
Emerging role of protein kinase C in energy homeostasis: A brief overviewQ27022044
Fast gapped-read alignment with Bowtie 2Q27860699
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individualsQ28607995
The Genotype-Tissue Expression (GTEx) projectQ28657968
Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosisQ28943317
Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese populationQ28943429
Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosisQ29417041
FINEMAP: efficient variable selection using summary data from genome-wide association studiesQ31037165
Appropriate data cleaning methods for genome-wide association studyQ31171213
Implications of genome-wide association studies in novel therapeutics in primary biliary cirrhosisQ33579196
Structural basis of protein kinase C isoform functionQ33973406
Variants at IRF5-TNPO3, 17q12-21 and MMEL1 are associated with primary biliary cirrhosisQ34087671
Protein kinase C beta (PKC beta): normal functions and diseasesQ34989333
Biological interpretation of genome-wide association studies using predicted gene functionsQ35571093
LD Score regression distinguishes confounding from polygenicity in genome-wide association studiesQ35831121
Association of primary biliary cirrhosis with variants in the CLEC16A, SOCS1, SPIB and SIAE immunomodulatory genes.Q35990216
International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathwaysQ36087896
Heterozygous mis-sense mutations in Prkcb as a critical determinant of anti-polysaccharide antibody formationQ36912619
Protein Kinase Cβ Is Required for Lupus Development in Sle MiceQ37146459
Pathway-based analysis of primary biliary cirrhosis genome-wide association studiesQ37191674
A polymorphism in the protein kinase C gene PRKCB is associated with α2-adrenoceptor-mediated vasoconstrictionQ37551273
Multiple genetic variants associated with primary biliary cirrhosis in a Han Chinese populationQ41615335
Association study of 44 candidate genes with depressive and anxiety symptoms in post-partum womenQ43186907
Novel modulating effects of PKC family genes on the relationship between serum vitamin D and relapse in multiple sclerosis.Q43805147
Primary biliary cirrhosis in monozygotic and dizygotic twins: genetics, epigenetics, and environmentQ46795010
Follow-up study identifies two novel susceptibility loci PRKCB and 8p11.21 for systemic lupus erythematosusQ54628341
Genetic variants of the protein kinase C-beta 1 gene and development of end-stage renal disease in patients with type 2 diabetes.Q54654030
Primary biliary cirrhosisQ56428273
P433issue3
P921main subjectascending cholangitisQ603644
genome-wide association studyQ1098876
susceptibility locusQ62091149
P304page(s)650-659
P577publication date2017-01-05
P1433published inHuman Molecular GeneticsQ2720965
P1476titleGenome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population
P478volume26

Reverse relations

cites work (P2860)
Q47827554Genetics and epigenetics in the pathogenesis of primary biliary cholangitis.
Q92259854Genome-wide Association Studies of Specific Antinuclear Autoantibody Subphenotypes in Primary Biliary Cholangitis
Q54936233Genome-wide haplotype association analysis of primary biliary cholangitis risk in Japanese.
Q33767342Identification of the functional variant driving ORMDL3 and GSDMB expression in human chromosome 17q12-21 in primary biliary cholangitis
Q94503843Integrated GWAS and mRNA Microarray Analysis Identified IFNG and CD40L as the Central Upstream Regulators in Primary Biliary Cholangitis
Q55049196NELFCD and CTSZ loci are associated with jaundice-stage progression in primary biliary cholangitis in the Japanese population.
Q90351565NFKB1 and MANBA Confer Disease Susceptibility to Primary Biliary Cholangitis via Independent Putative Primary Functional Variants
Q60909951POGLUT1, the putative effector gene driven by rs2293370 in primary biliary cholangitis susceptibility locus chromosome 3q13.33
Q94512665Population-Specific Genetic and Expression Differentiation in Europeans
Q41328248Principal contribution of HLA-DQ alleles, DQB1*06:04 and DQB1*03:01, to disease resistance against primary biliary cholangitis in a Japanese population.
Q55009231Serum Autotaxin Is a Useful Disease Progression Marker in Patients with Primary Biliary Cholangitis.
Q47109078Significance of functional disease-causal/susceptible variants identified by whole-genome analyses for the understanding of human diseases

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