PB-AM: An open-source, fully analytical linear poisson-boltzmann solver

scientific article published on 2 November 2016

PB-AM: An open-source, fully analytical linear poisson-boltzmann solver is …
instance of (P31):
scholarly articleQ13442814

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P818arXiv ID1608.04054
P8978DBLP publication IDjournals/jcc/FelbergBYJBH17
P356DOI10.1002/JCC.24528
P932PMC publication ID5403608
P698PubMed publication ID27804145

P50authorNathan BakerQ28318462
P2093author name stringElizabeth Jurrus
Teresa Head-Gordon
Lisa E Felberg
David H Brookes
Eng-Hui Yap
P2860cites workDelPhi: a comprehensive suite for DelPhi software and associated resourcesQ21195848
Electrostatics of nanosystems: application to microtubules and the ribosomeQ24555224
Crystal Structure of a Soluble Cleaved HIV-1 Envelope TrimerQ27680496
VMD: visual molecular dynamicsQ27860554
A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layersQ28655258
Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: applications to the molecular systems and geometric objectsQ29618574
Very fast empirical prediction and rationalization of protein pKa valuesQ29619767
AFMPB: An Adaptive Fast Multipole Poisson-Boltzmann Solver for Calculating Electrostatics in Biomolecular SystemsQ33598495
Advanced potential energy surfaces for condensed phase simulationQ38170391
Calculating the Bimolecular Rate of Protein-Protein Association with Interacting CrowdersQ40303738
An analytical approach to computing biomolecular electrostatic potential. II. Validation and applicationsQ41871452
An analytical approach to computing biomolecular electrostatic potential. I. Derivation and analysisQ41885477
A New and Efficient Poisson-Boltzmann Solver for Interaction of Multiple ProteinsQ42539878
On removal of charge singularity in Poisson-Boltzmann equation.Q45972522
Accelerated Poisson-Boltzmann calculations for static and dynamic systemsQ46543722
An Analytical Electrostatic Model for Salt Screened Interactions between Multiple ProteinsQ46684809
Treatment of charge singularities in implicit solvent modelsQ51905419
The Electrostatic Interaction of Rigid, Globular Proteins with Arbitrary Charge DistributionsQ52229965
CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsQ53340989
LI. A contribution to the theory of electrocapillarityQ56657468
Theory of the stability of strongly charged lyophobic sols and of the adhesion of strongly charged particles in solutions of electrolytesQ56672402
Protein-protein association: investigation of factors influencing association rates by Brownian dynamics simulationsQ57975313
Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics programQ57975320
Rapid, electrostatically assisted association of proteinsQ71031198
P433issue15
P921main subjectopen-source softwareQ1130645
P304page(s)1275-1282
P577publication date2016-11-02
P1433published inJournal of Computational ChemistryQ3186908
P1476titlePB-AM: An open-source, fully analytical linear poisson-boltzmann solver
P478volume38

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cites work (P2860)
Q38610791Improvements to the APBS biomolecular solvation software suite
Q46198232Simulating Biomolecules: Festschrift to commemorate the 60th birthday of Charles L. Brooks III.

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