ll-ACHRB: a scalable algorithm for sampling the feasible solution space of metabolic networks

scientific article published on 11 March 2016

ll-ACHRB: a scalable algorithm for sampling the feasible solution space of metabolic networks is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/SaaN16
P356DOI10.1093/BIOINFORMATICS/BTW132
P698PubMed publication ID27153696

P50authorLars K. NielsenQ30506227
Pedro A. SaaQ59558060
P2093author name stringPedro A Saa
P2860cites workQuantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0Q28246991
Global organization of metabolic fluxes in the bacterium Escherichia coliQ28247038
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Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptorsQ34064912
Energy balance for analysis of complex metabolic networksQ34178210
Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies.Q34187246
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Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructionsQ34344292
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Candidate states of Helicobacter pylori's genome-scale metabolic network upon application of "loop law" thermodynamic constraints.Q34601005
Understanding the interactions between bacteria in the human gut through metabolic modelingQ34975280
Minimal metabolic pathway structure is consistent with associated biomolecular interactionsQ34986572
optGpSampler: an improved tool for uniformly sampling the solution-space of genome-scale metabolic networksQ35097204
Large-scale in silico modeling of metabolic interactions between cell types in the human brainQ35117087
Uniform sampling of steady states in metabolic networks: heterogeneous scales and roundingQ35596316
Obstructions to Sampling Qualitative PropertiesQ35749937
Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutantsQ36217271
Use of randomized sampling for analysis of metabolic networksQ37305068
Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistanceQ37526602
Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states.Q39968205
A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.Q40519259
Monte Carlo sampling can be used to determine the size and shape of the steady-state flux spaceQ47417801
Comparative study of computational methods to detect the correlated reaction sets in biochemical networksQ51758941
Algorithm for perturbing thermodynamically infeasible metabolic networksQ51943669
Efficient Monte Carlo Procedures for Generating Points Uniformly Distributed over Bounded RegionsQ56172085
On the Complexity of Computing the Volume of a PolyhedronQ57401617
P433issue15
P407language of work or nameEnglishQ1860
P921main subjectmetabolic networkQ2263094
P304page(s)2330-2337
P577publication date2016-03-11
P1433published inBioinformaticsQ4914910
P1476titlell-ACHRB: a scalable algorithm for sampling the feasible solution space of metabolic networks
P478volume32

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cites work (P2860)
Q90064913Bayesian metabolic flux analysis reveals intracellular flux couplings
Q33735418CHRR: coordinate hit-and-run with rounding for uniform sampling of constraint-based models.
Q39331953Fast-SNP: a fast matrix pre-processing algorithm for efficient loopless flux optimization of metabolic models
Q93088577Flux sampling is a powerful tool to study metabolism under changing environmental conditions
Q52311187Genome-scale metabolic modeling of responses to polymyxins in Pseudomonas aeruginosa.
Q37520927IDENTIFYING CANCER SPECIFIC METABOLIC SIGNATURES USING CONSTRAINT-BASED MODELS.
Q61799375Metabolic Responses to Polymyxin Treatment in ATCC 19606: Integrating Transcriptomics and Metabolomics with Genome-Scale Metabolic Modeling
Q46251995Resources and tools for the high-throughput, multi-omic study of intestinal microbiota

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