Secondary structure is required for 3' splice site recognition in yeast

scientific article

Secondary structure is required for 3' splice site recognition in yeast is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKR662
P932PMC publication ID3239191
P698PubMed publication ID21893588
P5875ResearchGate publication ID51621172

P50authorAnna ValentováQ55154848
Petr FolkQ55154849
Ondřej GahuraQ55168147
František PůtaQ55168148
P2093author name stringChristian Hammann
Anna Valentová
František Půta
Ondřej Gahura
P2860cites workDiffusion mechanisms in metallic supercooled liquids and glassesQ59058749
A novel role for the 3' region of introns in pre-mRNA splicing of Saccharomyces cerevisiaeQ68203807
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Role of RNA structure in regulating pre-mRNA splicingQ24631714
The Vienna RNA websuiteQ24646014
L30 binds the nascent RPL30 transcript to repress U2 snRNP recruitmentQ27933044
The spliceosome: design principles of a dynamic RNP machineQ28131809
The MC-Fold and MC-Sym pipeline infers RNA structure from sequence dataQ28271703
Mechanisms of alternative splicing regulation: insights from molecular and genomics approachesQ29615084
Exon recognition in vertebrate splicingQ29615088
Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae.Q33355848
Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genomeQ33358666
Yeast pre-messenger RNA splicing efficiency depends on critical spacing requirements between the branch point and 3' splice siteQ33879810
Mutational analysis of pre-mRNA splicing in Saccharomyces cerevisiae using a sensitive new reporter gene, CUP1Q33960716
Complex spliceosomal organization ancestral to extant eukaryotesQ34385944
RNA structural patterns and splicing: molecular basis for an RNA-based enhancer.Q34693475
In-line probing analysis of riboswitchesQ34764837
Formation of the yeast splicing complex A1 and association of the splicing factor PRP19 with the pre-mRNA are independent of the 3' region of the intronQ34825409
Secondary structure of splice sites in adenovirus mRNA precursorsQ35471755
Influence of RNA secondary structure on the pre-mRNA splicing processQ35968217
Scanning and competition between AGs are involved in 3' splice site selection in mammalian intronsQ36695561
Exon definition may facilitate splice site selection in RNAs with multiple exonsQ36713104
Intron self-complementarity enforces exon inclusion in a yeast pre-mRNAQ36818243
Yeast genome evolution--the origin of the speciesQ36875541
Riboswitches: ancient and promising genetic regulatorsQ37356391
Four exons of the serotonin receptor 4 gene are associated with multiple distant branch pointsQ39773634
Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes.Q40196235
Functional recognition of the 3' splice site AG by the splicing factor U2AF35.Q40908643
Intramolecular structure in yeast introns aids the early steps of in vitro spliceosome assembly.Q41832859
Modulation of alternative splicing by long-range RNA structures in DrosophilaQ41958985
A class of human exons with predicted distant branch points revealed by analysis of AG dinucleotide exclusion zonesQ42148185
The role of branchpoint-3' splice site spacing and interaction between intron terminal nucleotides in 3' splice site selection in Saccharomyces cerevisiaeQ42611009
Crosslinking of the U5 snRNP-specific 116-kDa protein to RNA hairpins that block step 2 of splicing.Q43206147
Bimolecular exon ligation by the human spliceosome bypasses early 3' splice site AG recognition and requires NTP hydrolysisQ43206569
Unexpected point mutations activate cryptic 3' splice sites by perturbing a natural secondary structure within a yeast intronQ46102390
A U-rich tract enhances usage of an alternative 3′ splice site in yeastQ46196387
RNAshapes: an integrated RNA analysis package based on abstract shapes.Q51958112
Alternative splicing caused by RNA secondary structure.Q54198854
P275copyright licenseCreative Commons Attribution-NonCommercial 3.0 UnportedQ18810331
P6216copyright statuscopyrightedQ50423863
P433issue22
P304page(s)9759-9767
P577publication date2011-09-05
P1433published inNucleic Acids ResearchQ135122
P1476titleSecondary structure is required for 3' splice site recognition in yeast
P478volume39

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cites work (P2860)
Q35195765Accurate, model-based tuning of synthetic gene expression using introns in S. cerevisiae
Q41860973An intronic RNA structure modulates expression of the mRNA biogenesis factor Sus1
Q36374185Brr2p-mediated conformational rearrangements in the spliceosome during activation and substrate repositioning
Q41293984Cwc21p promotes the second step conformation of the spliceosome and modulates 3' splice site selection
Q38586911Diverse regulation of 3' splice site usage
Q92815790Evolution of intron splicing towards optimized gene expression is based on various Cis- and Trans-molecular mechanisms
Q38783732IntSplice: prediction of the splicing consequences of intronic single-nucleotide variations in the human genome.
Q38027121Intronic features that determine the selection of the 3' splice site.
Q47205612Introns provide a platform for intergenic regulatory feedback of RPL22 paralogs in yeast
Q39001197Large-scale analysis of branchpoint usage across species and cell lines
Q33364292Links between mRNA splicing, mRNA quality control, and intellectual disability
Q36072290Nucleotide sequence composition adjacent to intronic splice sites improves splicing efficiency via its effect on pre-mRNA local folding in fungi
Q36011235Parallel computation of genome-scale RNA secondary structure to detect structural constraints on human genome.
Q34698694Quantifying variances in comparative RNA secondary structure prediction
Q35981884RNA secondary structure mediates alternative 3'ss selection in Saccharomyces cerevisiae
Q37238025RNA structure in splicing: An evolutionary perspective
Q26861955Regulated pre-mRNA splicing: the ghostwriter of the eukaryotic genome
Q34070147Secondary structure of a conserved domain in an intron of influenza A M1 mRNA
Q52547079Splicing and transcription touch base: co-transcriptional spliceosome assembly and function.
Q39999542Splicing of Nascent RNA Coincides with Intron Exit from RNA Polymerase II.
Q46132698Structure of the yeast spliceosomal postcatalytic P complex.
Q39360393The effects of structure on pre-mRNA processing and stability
Q36190201The role of short RNA loops in recognition of a single-hairpin exon derived from a mammalian-wide interspersed repeat

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