APD: the Antimicrobial Peptide Database

scientific article published on January 2004

APD: the Antimicrobial Peptide Database is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/nar/WangW04
P356DOI10.1093/NAR/GKH025
P932PMC publication ID308759
P698PubMed publication ID14681488
P5875ResearchGate publication ID8955074

P2093author name stringZhe Wang
Guangshun Wang
P2860cites workThe Protein Data BankQ24515306
A simple method for displaying the hydropathic character of a proteinQ26778481
Conformations of human apolipoprotein E(263-286) and E(267-289) in aqueous solutions of sodium dodecyl sulfate by CD and 1H NMRQ27733299
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.Q29547492
Experimentally determined hydrophobicity scale for proteins at membrane interfacesQ29620679
An anionic antimicrobial peptide from toad Bombina maximaQ30837897
Isolation of an ovine pulmonary surfactant-associated anionic peptide bactericidal for Pasteurella haemolyticaQ33626881
Diversity of antimicrobial peptides and their mechanisms of actionQ33789705
Role of membranes in the activities of antimicrobial cationic peptidesQ34111592
Cationic antimicrobial peptides and their multifunctional role in the immune systemQ34122806
How the lipid-free structure of the N-terminal truncated human apoA-I converts to the lipid-bound form: new insights from NMR and X-ray structural comparisonQ34953273
Clinical development of cationic antimicrobial peptides: from natural to novel antibioticsQ35014517
Staphylococcus aureus resistance to human defensins and evasion of neutrophil killing via the novel virulence factor MprF is based on modification of membrane lipids with l-lysineQ36369306
Cationic antimicrobial peptides : issues for potential clinical use.Q40570338
Interaction of antimicrobial peptides from Australian amphibians with lipid membranesQ60202107
P433issueDatabase issue
P921main subjectdatabaseQ8513
antimicrobial peptideQ1201508
P304page(s)D590-2
P577publication date2004-01-01
P1433published inNucleic Acids ResearchQ135122
P1476titleAPD: the Antimicrobial Peptide Database
P478volume32

Reverse relations

cites work (P2860)
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Q38525344Comparative analysis of septic injury-inducible genes in phylogenetically distant model organisms of regeneration and stem cell research, the planarian Schmidtea mediterranea and the cnidarian Hydra vulgaris
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Q90437852Computational screening of antimicrobial peptides for Acinetobacter baumannii
Q39416169Control of pH responsive peptide self-association during endocytosis is required for effective gene transfer
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Q38936327Convergent evolution of defensin sequence, structure and function
Q30977526Correlation of three-dimensional structures with the antibacterial activity of a group of peptides designed based on a nontoxic bacterial membrane anchor
Q41897132Criterion for amino acid composition of defensins and antimicrobial peptides based on geometry of membrane destabilization
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Q37277482Database-Guided Discovery of Potent Peptides to Combat HIV-1 or Superbugs
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Q34343813Molecular dynamics simulations of three protegrin-type antimicrobial peptides: interplay between charges at the termini, β-sheet structure and amphiphilic interactions
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Q35236764NKLP27: a teleost NK-lysin peptide that modulates immune response, induces degradation of bacterial DNA, and inhibits bacterial and viral infection
Q36514316Natural antimicrobial peptides as promising anti-HIV candidates
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Q53316925Novel Peptides from Skins of Amphibians Showed Broad-Spectrum Antimicrobial Activities.
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Q41145077Overlap and diversity in antimicrobial peptide databases: compiling a non-redundant set of sequences.
Q41897398Paracentrin 1, a synthetic antimicrobial peptide from the sea-urchin Paracentrotus lividus, interferes with staphylococcal and Pseudomonas aeruginosa biofilm formation
Q30444431PepBank--a database of peptides based on sequence text mining and public peptide data sources
Q42281241PepBind: a comprehensive database and computational tool for analysis of protein-peptide interactions.
Q51960837PepBio: predicting the bioactivity of host defense peptides
Q36538861Peptide antimicrobial agents
Q37598400Peptide design for antimicrobial and immunomodulatory applications
Q41714058Permeabilization of fungal hyphae by the plant defensin NaD1 occurs through a cell wall-dependent process
Q24655836PhytAMP: a database dedicated to antimicrobial plant peptides
Q99578694Plant Antimicrobial Peptides: State of the Art, In Silico Prediction and Perspectives in the Omics Era
Q89637204PlantPepDB: A manually curated plant peptide database
Q41916247Post-translational Modifications of Natural Antimicrobial Peptides and Strategies for Peptide Engineering
Q36446054Prediction of anticancer peptides against MCF-7 breast cancer cells from the peptidomes of Achatina fulica mucus fractions
Q28477742Prediction of antimicrobial peptides based on sequence alignment and feature selection methods
Q42210936Prediction of antimicrobial peptides based on sequence alignment and support vector machine-pairwise algorithm utilizing LZ-complexity.
Q48346066Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application
Q33685084Prediction of linear cationic antimicrobial peptides based on characteristics responsible for their interaction with the membranes
Q34612286Primary structure and cellular localization of callinectin, an antimicrobial peptide from the blue crab
Q47802195Production of an anti-Candida peptide via fed batch and ion exchange chromatography
Q40174361Quasiracemate Crystal Structures of Magainin 2 Derivatives Support the Functional Significance of the Phenylalanine Zipper Motif.
Q47805721Rational Design of Membrane-Pore-Forming Peptides
Q33219565Rational combinatorial design of pore-forming beta-sheet peptides
Q53430843Reversed sequence enhances antimicrobial activity of a synthetic peptide.
Q92924219Revisiting the Interaction of Melittin with Phospholipid Bilayers: The Effects of Concentration and Ionic Strength
Q34252667Role of Charged Residues in the Catalytic Sites of Escherichia coli ATP Synthase
Q36063917S100A12 Is Part of the Antimicrobial Network against Mycobacterium leprae in Human Macrophages
Q36160517Sarkosyl-Induced Helical Structure of an Antimicrobial Peptide GW-Q6 Plays an Essential Role in the Binding of Surface Receptor OprI in Pseudomonas aeruginosa
Q52656373Simulating the antimicrobial mechanism of human β-defensin-3 with coarse-grained molecular dynamics.
Q42032181Small lipopeptides possess anti-biofilm capability comparable to daptomycin and vancomycin
Q38272770Solution and solid-state NMR structural studies of antimicrobial peptides LPcin-I and LPcin-II.
Q28553903Specific Anti-Leukemic Activity of the Peptide Warnericin RK and Analogues and Visualization of Their Effect on Cancer Cells by Chemical Raman Imaging
Q53708430Staphylococcal Osteomyelitis: Disease Progression, Treatment Challenges, and Future Directions.
Q52567287StraPep: a structure database of bioactive peptides.
Q89860592Structural Analysis and Design of Chionodracine-Derived Peptides Using Circular Dichroism and Molecular Dynamics Simulations
Q98612838Structural and Molecular Docking Analytical Studies of the Predicted Ligand Binding Sites of Cadherin-1 in Cancer Prognostics
Q28484282Structural and functional characterization of a multifunctional alanine-rich peptide analogue from Pleuronectes americanus
Q42209245Structural insights into and activity analysis of the antimicrobial peptide myxinidin.
Q42053270Structural location determines functional roles of the basic amino acids of KR-12, the smallest antimicrobial peptide from human cathelicidin LL-37.
Q27676333Structure, Dynamics, and Antimicrobial and Immune Modulatory Activities of Human LL-23 and Its Single-Residue Variants Mutated on the Basis of Homologous Primate Cathelicidins
Q45344098Structure-function studies of Bubalus bubalis lingual antimicrobial peptide analogs
Q27652293Structures of human host defense cathelicidin LL-37 and its smallest antimicrobial peptide KR-12 in lipid micelles
Q42038711Structures, regulatory regions, and inductive expression patterns of antimicrobial peptide genes in the silkworm Bombyx mori
Q33578198Surfactant protein B propeptide contains a saposin-like protein domain with antimicrobial activity at low pH
Q27933958Survival strategies of yeast and filamentous fungi against the antifungal protein AFP.
Q55245606Synthesis and activity of a diselenide bond mimetic of the antimicrobial protein caenopore-5.
Q37558409The Brassicaceae-specific EWR1 gene provides resistance to vascular wilt pathogens
Q36104509The Continuing Evolution of HIV-1 Therapy: Identification and Development of Novel Antiretroviral Agents Targeting Viral and Cellular Targets
Q42140998The Importance of Amino Acid Composition in Natural AMPs: An Evolutional, Structural, and Functional Perspective
Q26797488The Potential Use of Natural and Structural Analogues of Antimicrobial Peptides in the Fight against Neglected Tropical Diseases
Q28273545The primary transcriptome of the major human pathogen Helicobacter pylori
Q90463869The role of the microbiota in infectious diseases
Q46398427The rumen microbiome: an underexplored resource for novel antimicrobial discovery.
Q42205540The specificity of protection against cationic antimicrobial peptides by lactoferrin binding protein B.
Q30418414The use of therapeutic peptides to target and to kill cancer cells
Q33600002Topical antimicrobials for burn infections - an update
Q34440865Towards the improved discovery and design of functional peptides: common features of diverse classes permit generalized prediction of bioactivity
Q36505436Two hits are better than one: membrane-active and DNA binding-related double-action mechanism of NK-18, a novel antimicrobial peptide derived from mammalian NK-lysin
Q30389258Virocidal activity of Egyptian scorpion venoms against hepatitis C virus.
Q54263957Virtual screening of a milk peptide database for the identification of food-derived antimicrobial peptides.
Q34994273Vitellogenin from the silkworm, Bombyx mori: an effective anti-bacterial agent
Q62659987What Can Pleiotropic Proteins in Innate Immunity Teach Us about Bioconjugation and Molecular Design?
Q45943841What can machine learning do for antimicrobial peptides, and what can antimicrobial peptides do for machine learning?
Q22066248Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes
Q58090477dbAMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data
Q92244345Ω76: A designed antimicrobial peptide to combat carbapenem- and tigecycline-resistant Acinetobacter baumannii

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