APD3: the antimicrobial peptide database as a tool for research and education

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APD3: the antimicrobial peptide database as a tool for research and education is …
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scholarly articleQ13442814

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P8978DBLP publication IDjournals/nar/WangLW16
P356DOI10.1093/NAR/GKV1278
P932PMC publication ID4702905
P698PubMed publication ID26602694
P5875ResearchGate publication ID284709368

P2093author name stringZhe Wang
Xia Li
Guangshun Wang
P2860cites workA linguistic model for the rational design of antimicrobial peptides.Q51116525
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Phylogenetic structure of the prokaryotic domain: The primary kingdomsQ24564821
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A simple method for displaying the hydropathic character of a proteinQ26778481
Antimicrobial peptides in 2014Q27027316
Antimicrobial peptides of multicellular organismsQ28131811
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Bioprospecting the American alligator (Alligator mississippiensis) host defense peptidomeQ28543378
The RCSB Protein Data Bank: new resources for research and educationQ28710196
Antimicrobial and host-defense peptides as new anti-infective therapeutic strategiesQ29617810
Correlation of three-dimensional structures with the antibacterial activity of a group of peptides designed based on a nontoxic bacterial membrane anchorQ30977526
Analysis and prediction of antibacterial peptides.Q33291458
Human antimicrobial peptides and proteinsQ33673156
Identification of novel human immunodeficiency virus type 1-inhibitory peptides based on the antimicrobial peptide databaseQ33676425
Diversity of antimicrobial peptides and their mechanisms of actionQ33789705
Extremely abundant antimicrobial peptides existed in the skins of nine kinds of Chinese odorous frogsQ34059191
Ternary nylon-3 copolymers as host-defense peptide mimics: beyond hydrophobic and cationic subunitsQ34408132
Molecular diversity in gene-encoded, cationic antimicrobial polypeptides.Q34595498
ANTIMIC: a database of antimicrobial sequencesQ34925783
Bactofencin A, a new type of cationic bacteriocin with unusual immunityQ35028336
Defensins knowledgebase: a manually curated database and information source focused on the defensins family of antimicrobial peptidesQ35179227
Antibacterial peptides: basic facts and emerging conceptsQ35203810
The potter's wheel: the host's role in sculpting its microbiotaQ35569781
DAMPD: a manually curated antimicrobial peptide databaseQ35630683
Improved methods for classification, prediction, and design of antimicrobial peptidesQ36082872
CAMPR3: a database on sequences, structures and signatures of antimicrobial peptidesQ36434578
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Tool developments for structure-function studies of host defense peptidesQ36724174
Database-Guided Discovery of Potent Peptides to Combat HIV-1 or SuperbugsQ37277482
AMPed up immunity: how antimicrobial peptides have multiple roles in immune defenseQ37393392
Biofilms: an advancement in our understanding of Francisella speciesQ37587015
Short native antimicrobial peptides and engineered ultrashort lipopeptides: similarities and differences in cell specificities and modes of actionQ37875765
Platelets: at the nexus of antimicrobial defenceQ38211899
Host-defense peptides of the skin with therapeutic potential: From hagfish to humanQ38385713
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APD: the Antimicrobial Peptide DatabaseQ40403120
The Peptaibol Database: a database for sequences and structures of naturally occurring peptaibolsQ40403386
Sequence and specificity of two antibacterial proteins involved in insect immunityQ42077306
Ab initio design of potent anti-MRSA peptides based on database filtering technologyQ42096030
The Importance of Amino Acid Composition in Natural AMPs: An Evolutional, Structural, and Functional PerspectiveQ42140998
APD2: the updated antimicrobial peptide database and its application in peptide designQ43122430
YADAMP: yet another database of antimicrobial peptides.Q44974020
DBAASP: database of antimicrobial activity and structure of peptidesQ46885493
P275copyright licenseCreative Commons Attribution-NonCommercial 4.0 InternationalQ34179348
P6216copyright statuscopyrightedQ50423863
P433issueD1
P407language of work or nameEnglishQ1860
P921main subjectantimicrobial peptideQ1201508
databaseQ8513
P304page(s)D1087-93
P577publication date2015-11-23
P1433published inNucleic Acids ResearchQ135122
P1476titleAPD3: the antimicrobial peptide database as a tool for research and education
P478volume44

Reverse relations

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Q37639825Membrane Active Antimicrobial Peptides: Translating Mechanistic Insights to Design
Q58717273Membrane Active Peptides and Their Biophysical Characterization
Q37409005Membrane-Active Epithelial Keratin 6A Fragments (KAMPs) Are Unique Human Antimicrobial Peptides with a Non-αβ Structure
Q90005476Metal Binding Antimicrobial Peptides in Nanoparticle Bio-functionalization: New Heights in Drug Delivery and Therapy
Q38665077Molecular Dynamics Simulations of the Host Defense Peptide Temporin L and Its Q3K Derivative: An Atomic Level View from Aggregation in Water to Bilayer Perturbation
Q33708570Multi-label Learning for Predicting the Activities of Antimicrobial Peptides.
Q38614392Myticalins: A Novel Multigenic Family of Linear, Cationic Antimicrobial Peptides from Marine Mussels (Mytilus spp.).
Q48163141Natural Antimicrobial Peptides as Inspiration for Design of a New Generation Antifungal Compounds.
Q90311503Natural Occurrence in Venomous Arthropods of Antimicrobial Peptides Active against Protozoan Parasites
Q38833324Natural and synthetic peptides with antifungal activity
Q90475709Novel 3D Structure Based Model for Activity Prediction and Design of Antimicrobial Peptides
Q60049520Novel BUF2-magnetite nanobioconjugates with cell-penetrating abilities
Q42329778Ocellatin peptides from the skin secretion of the South American frog Leptodactylus labyrinthicus (Leptodactylidae): characterization, antimicrobial activities and membrane interactions.
Q90479741Opossum Cathelicidins Exhibit Antimicrobial Activity Against a Broad Spectrum of Pathogens Including West Nile Virus
Q57151152Optimal selection of molecular descriptors for antimicrobial peptides classification: an evolutionary feature weighting approach
Q38718931Optimized expression of the antimicrobial protein Gloverin from Galleria mellonella using stably transformed Drosophila melanogaster S2 cells
Q36309109Peptide modification results in the formation of a dimer with a 60-fold enhanced antimicrobial activity
Q84315466Peptide-Protein Interaction Studies of Antimicrobial Peptides Targeting Middle East Respiratory Syndrome Coronavirus Spike Protein: An In Silico Approach
Q99570567Peptides with Dual Antimicrobial-Anticancer Activity: Strategies to Overcome Peptide Limitations and Rational Design of Anticancer Peptides
Q33700825Perspectives for clinical use of engineered human host defense antimicrobial peptides
Q49401666Physician-initiated clinical study of limb ulcers treated with a functional peptide, SR-0379: from discovery to a randomized, double-blind, placebo-controlled trial.
Q99578694Plant Antimicrobial Peptides: State of the Art, In Silico Prediction and Perspectives in the Omics Era
Q89637204PlantPepDB: A manually curated plant peptide database
Q26765450Potential Use of Antimicrobial Peptides as Vaginal Spermicides/Microbicides
Q41545553Potential role of an antimicrobial peptide, KLK in inhibiting lipopolysaccharide-induced macrophage inflammation.
Q92279180Preclinical studies of toxicity and safety of the AS-48 bacteriocin
Q30838333Predicting antimicrobial peptides with improved accuracy by incorporating the compositional, physico-chemical and structural features into Chou's general PseAAC.
Q58707987Prediction of Antimicrobial Potential of a Chemically Modified Peptide From Its Tertiary Structure
Q92275961Preparation and in Vitro Evaluation of New Composite Mesh Functionalized with Cationic Antimicrobial Peptide
Q47802195Production of an anti-Candida peptide via fed batch and ion exchange chromatography
Q90399028Proteomic Adaptation of Streptococcus pneumoniae to the Human Antimicrobial Peptide LL-37
Q64249523Proteomic Analysis of the Venom from the Ruby Ant and the Isolation of a Novel Insecticidal Decapeptide
Q52564767Proteomics assisted profiling of antimicrobial peptide signatures from black pepper (Piper nigrum L.).
Q61799995Reassessing the Host Defense Peptide Landscape
Q36160517Sarkosyl-Induced Helical Structure of an Antimicrobial Peptide GW-Q6 Plays an Essential Role in the Binding of Surface Receptor OprI in Pseudomonas aeruginosa
Q49756084Small molecule mimics of DFTamP1, a database designed anti-Staphylococcal peptide
Q39168417Sparse Neural Network Models of Antimicrobial Peptide-Activity Relationships
Q54957974SpirPep: an in silico digestion-based platform to assist bioactive peptides discovery from a genome-wide database.
Q96303599Strategies in Translating the Therapeutic Potentials of Host Defense Peptides
Q38651253Structure-Activity Relationships of Insect Defensins
Q64921445Sub-inhibitory Effects of Antimicrobial Peptides.
Q38637954Synthetic Antibacterial Peptide Exhibits Synergy with Oxacillin against MRSA.
Q92147348Systematic Mutagenesis of Oncocin Reveals Enhanced Activity and Insights into the Mechanisms of Antimicrobial Activity
Q43874965Systemic Responses of Multidrug-Resistant Pseudomonas aeruginosa and Acinetobacter baumannii Following Exposure to the Antimicrobial Peptide Cathelicidin-BF Imply Multiple Intracellular Targets
Q61808516TLR4-interacting SPA4 peptide improves host defense and alleviates tissue injury in a mouse model of Pseudomonas aeruginosa lung infection
Q93018123The Komodo dragon (Varanus komodoensis) genome and identification of innate immunity genes and clusters
Q98613931The Potential of Antimicrobial Peptides as an Antiviral Therapy against COVID-19
Q46242249The Potential of Frog Skin-Derived Peptides for Development into Therapeutically-Valuable Immunomodulatory Agents.
Q49490467The Road from Host-Defense Peptides to a New Generation of Antimicrobial Drugs
Q95841016The Role and Potential Application of Antimicrobial Peptides in Autoimmune Diseases
Q39809838The Spider Venom Peptide Lycosin-II Has Potent Antimicrobial Activity against Clinically Isolated Bacteria.
Q90862867The antimicrobial peptide PFR induces necroptosis mediated by ER stress and elevated cytoplasmic calcium and mitochondrial ROS levels: cooperation with Ara-C to act against acute myeloid leukemia
Q35992127The immunology of host defence peptides: beyond antimicrobial activity
Q64067289The transcriptome analysis of Protaetia brevitarsis Lewis larvae
Q97517276The transcriptome analysis of the whole-body of the gastropod mollusk Limax flavus and screening of putative antimicrobial peptide and protein genes
Q38653740The π Configuration of the WWW Motif of a Short Trp-Rich Peptide Is Critical for Targeting Bacterial Membranes, Disrupting Preformed Biofilms, and Killing Methicillin-Resistant Staphylococcus aureus.
Q40148057Titanium surfaces immobilized with the major antimicrobial fragment FK-16 of human cathelicidin LL-37 are potent against multiple antibiotic-resistant bacteria
Q48031478Tools for Designing Amphipathic Helical Antimicrobial Peptides
Q92666143Toward Autonomous Antibiotic Discovery
Q98164417Transcriptome profiling and in silico detection of the antimicrobial peptides of red king crab Paralithodes camtschaticus
Q52609589Tryptophan-Rich and Proline-Rich Antimicrobial Peptides.
Q46326633Tumor cell membrane-targeting cationic antimicrobial peptides: novel insights into mechanisms of action and therapeutic prospects
Q98726213Two Tachykinin-Related Peptides with Antimicrobial Activity Isolated from Triatoma infestans Hemolymph
Q62489166Unifying structural signature of eukaryotic α-helical host defense peptides
Q57174709Unraveling the bioactivity of anticancer peptides as deduced from machine learning
Q59356042Unveiling the Multifaceted Mechanisms of Antibacterial Activity of Buforin II and Frenatin 2.3S Peptides from Skin Micro-Organs of the Orinoco Lime Treefrog ()
Q38974491Using Diphenylphosphoryl Azide (DPPA) for the Facile Synthesis of Biodegradable Antiseptic Random Copolypeptides.
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