Functional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp. PNB.

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Functional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp. PNB. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.FOB.2014.03.001
P932PMC publication ID4048848
P698PubMed publication ID24918041
P5875ResearchGate publication ID260609071

P2093author name stringJoydeep Chakraborty
Tapan K Dutta
Madhumita Roy
Debajyoti Ghosal
Pratick Khara
P2860cites workProperties of overlapping genes are conserved across microbial genomesQ22065755
Structural flexibility in the Burkholderia mallei genomeQ22066378
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis toolsQ24248165
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easyQ24603196
VADAR: a web server for quantitative evaluation of protein structure qualityQ24672199
Site-directed mutagenesis of conserved amino acids in the alpha subunit of toluene dioxygenase: potential mononuclear non-heme iron coordination sitesQ24683701
Basic local alignment search toolQ25938991
PROCHECK: a program to check the stereochemical quality of protein structuresQ26778411
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0Q26778434
Electron transfer complex formation between oxygenase and ferredoxin components in Rieske nonheme iron oxygenase systemQ27643276
Comparative protein modelling by satisfaction of spatial restraintsQ27860866
The PSIPRED protein structure prediction serverQ27860953
Analyzing real-time PCR data by the comparative C(T) methodQ28131831
Assessment of protein models with three-dimensional profilesQ28283805
Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenasesQ28333820
Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilitiesQ28681771
Origins of genes: "big bang" or continuous creation?Q28775832
Polycyclic aromatic hydrocarbon metabolic network in Mycobacterium vanbaalenii PYR-1.Q30503924
Polyphasic assignment of an aromatic-degrading Pseudomonas sp., strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov.Q30607536
Staphylococcus succinus sp. nov., isolated from Dominican amberQ32025186
ProFace: a server for the analysis of the physicochemical features of protein-protein interfacesQ33246033
Identification, cloning, and characterization of a multicomponent biphenyl dioxygenase from Sphingobium yanoikuyae B1.Q33291513
Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199.Q33853412
Natural engineering principles of electron tunnelling in biological oxidation-reductionQ33881476
Aromatic hydrocarbon dioxygenases in environmental biotechnologyQ33941468
Characterization and evolution of anthranilate 1,2-dioxygenase from Acinetobacter sp. strain ADP1.Q33995178
Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: evidence for horizontal gene transferQ33999467
The whole genome sequence of Sphingobium chlorophenolicum L-1: insights into the evolution of the pentachlorophenol degradation pathwayQ34241408
An insight into the origin and functional evolution of bacterial aromatic ring-hydroxylating oxygenasesQ34302711
Catabolic role of a three-component salicylate oxygenase from Sphingomonas yanoikuyae B1 in polycyclic aromatic hydrocarbon degradationQ34384156
Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenasesQ34407705
Stability and evolution of overlapping genesQ34510162
The role of active-site residues in naphthalene dioxygenaseQ35107316
Bacterial transcriptional regulators for degradation pathways of aromatic compoundsQ35880920
Isolation and preliminary characterization of the subunits of the terminal component of naphthalene dioxygenase from Pseudomonas putida NCIB 9816-4.Q36122173
Purification and characterization of a three-component salicylate 1-hydroxylase from Sphingomonas sp. strain CHY-1Q36313367
Complete genome sequence of the pyrene-degrading bacterium Cycloclasticus sp. strain P1Q36397001
Molecular characteristics of xenobiotic-degrading sphingomonadsQ37323402
Genetic analysis of phenoxyalkanoic acid degradation in Sphingomonas herbicidovorans MH.Q37572327
Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a sphingomonas strain that degrades various polycyclic aromatic hydrocarbons.Q37597540
Genetic and molecular organization of the alkylbenzene catabolism operon in the psychrotrophic strain Pseudomonas putida 01G3.Q39489435
A novel phenanthrene dioxygenase from Nocardioides sp. Strain KP7: expression in Escherichia coli.Q39587065
Two unusual chlorocatechol catabolic gene clusters in Sphingomonas sp. TFD44.Q40448911
The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas.Q40535883
Molecular and biochemical characterization of the tetralin degradation pathway in Rhodococcus sp. strain TFBQ41859187
Nucleotide sequence and expression of the catechol 2,3-dioxygenase-encoding gene of phenol-catabolizing Pseudomonas CF600.Q41863611
Multiple-subunit genes of the aromatic-ring-hydroxylating dioxygenase play an active role in biphenyl and polychlorinated biphenyl degradation in Rhodococcus sp. strain RHA1.Q42064111
Dual two-component regulatory systems are involved in aromatic compound degradation in a polychlorinated-biphenyl degrader, Rhodococcus jostii RHA1Q42248278
GRAMM-X public web server for protein-protein dockingQ42554377
The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionarily to the enzymes for benzene and toluene degradationQ42556559
Genetic characterization and evolutionary implications of a chromosomally encoded naphthalene-degradation upper pathway from Pseudomonas stutzeri AN10.Q42607132
Nucleotide sequence, organization and characterization of the (halo)aromatic acid catabolic plasmid pA81 from Achromobacter xylosoxidans A8.Q42644532
Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2.Q44301516
Identification of two new sets of genes for dibenzothiophene transformation in Burkholderia sp. DBT1.Q44833205
Evolution of overlapping genesQ44976752
Isolation and characterization of a novel sphingomonad capable of growth with chrysene as sole carbon and energy sourceQ45186810
Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analysesQ45314858
meta-Cleavage of hydroxynaphthoic acids in the degradation of phenanthrene by Sphingobium sp. strain PNB.Q45718856
Characterization of a ring-hydroxylating dioxygenase from phenanthrene-degrading Sphingomonas sp. strain LH128 able to oxidize benz[a]anthraceneQ46145296
Induction of aromatic catabolic activity in Sphingomonas aromaticivorans strain F199.Q47620607
Cloning and expression of genes encoding meta-cleavage enzymes from 4,6-dimethyldibenzothiophene-degrading Sphingomonas strain TZS-7.Q47844938
Isolation and properties of an iron-protein from the (reduced coenzyme Q)-cytochrome C reductase complex of the respiratory chainQ54005858
Purification, characterization, and crystallization of the components of a biphenyl dioxygenase system from Sphingobium yanoikuyae B1.Q54448811
Characterization of a naphthalene dioxygenase endowed with an exceptionally broad substrate specificity toward polycyclic aromatic hydrocarbons.Q55042524
Thermal renaturation of deoxyribonucleic acidsQ79003826
The crystal structure of the ring-hydroxylating dioxygenase from Sphingomonas CHY-1Q80198999
Aromatic hydrocarbon degradation by Sphingomonas yanoikuyae B1Q86786989
P304page(s)290-300
P577publication date2014-03-07
P1433published inFEBS Open BioQ27724062
P1476titleFunctional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp. PNB.
P478volume4

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cites work (P2860)
Q50062806A Novel Steroid-Coenzyme A Ligase from Novosphingobium sp. Strain Chol11 Is Essential for an Alternative Degradation Pathway for Bile Salts
Q41488660Assigning ecological roles to the populations belonging to a phenanthrene-degrading bacterial consortium using omic approaches.
Q28079210Current State of Knowledge in Microbial Degradation of Polycyclic Aromatic Hydrocarbons (PAHs): A Review
Q57346065Genetic Adaptations of Bacteria for Metabolism of Polycyclic Aromatic Hydrocarbons
Q47321297Insights into the genome and proteome of Sphingomonas paucimobilis strain 20006FA involved in the regulation of polycyclic aromatic hydrocarbon degradation.
Q35861391Key high molecular weight PAH-degrading bacteria in a soil consortium enriched using a sand-in-liquid microcosm system.
Q35629236Metagenomics reveals the high polycyclic aromatic hydrocarbon-degradation potential of abundant uncultured bacteria from chronically polluted subantarctic and temperate coastal marine environments.
Q92978209Mud volcanoes and the presence of PAHs

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