Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases

scientific article

Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P356DOI10.1016/S0065-2911(08)60155-1
P698PubMed publication ID8922118

P2093author name stringButler CS
Mason JR
P2860cites workCrystal structure of a bacterial non-haem iron hydroxylase that catalyses the biological oxidation of methaneQ22061879
4-Sulphobenzoate 3,4-dioxygenase. Purification and properties of a desulphonative two-component enzyme system from Comamonas testosteroni T-2Q24529547
Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: complete DNA sequence of an upper naphthalene catabolic pathwayQ24681768
Terephthalate 1,2-dioxygenase system from Comamonas testosteroni T-2: purification and some properties of the oxygenase componentQ24685583
Purification and characterization of the oxygenase component of biphenyl 2,3-dioxygenase from Pseudomonas sp. strain LB400Q24685881
Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2Fe-2S]Q27641437
Crystal structure of the carbon monoxide-substrate-cytochrome P-450CAM ternary complexQ27701311
Structure of protocatechuate 3,4-dioxygenase from Pseudomonas aeruginosa at 2.15 A resolutionQ27730790
Oxidative degradation of aromatic hydrocarbons by microorganisms. I. Enzymatic formation of catechol from benzeneQ28239139
Toluene dioxygenase: Purification of an iron-sulfur protein by affinity chromatographyQ28251194
An Electron-Spin-Resonance Study on the Reodex-Active Centers of the 4-Methoxybenzoate Monooxygenase from Pseudomonas putidaQ28264309
Rubredoxin reductase of Pseudomonas oleovorans. Structural relationship to other flavoprotein oxidoreductases based on one NAD and two FAD fingerprintsQ28280271
cDNA sequence of adrenodoxin reductase. Identification of NADP-binding sites in oxidoreductasesQ28284715
2-Oxo-1,2-dihydroquinoline 8-Monooxygenase, a Two-component Enzyme System from Pseudomonas putida 86Q28294899
Overproduction, purification, and characterization of chlorocatechol dioxygenase, a non-heme iron dioxygenase with broad substrate toleranceQ28321416
Benzene dioxygenase in Pseudomonas putida. Subunit composition and immuno-cross-reactivity with other aromatic dioxygenasesQ28361604
Enhanced biodegradation of polychlorinated biphenyls after site-directed mutagenesis of a biphenyl dioxygenase geneQ28378460
Dibenzofuran 4,4a-dioxygenase from Sphingomonas sp. strain RW1: angular dioxygenation by a three-component enzyme systemQ28378650
Prediction of the occurrence of the ADP-binding beta alpha beta-fold in proteins, using an amino acid sequence fingerprintQ29614862
Oxygen toxicity, oxygen radicals, transition metals and diseaseQ29615096
Structure and assembly of protocatechuate 3,4-dioxygenaseQ30196085
The orientation of iron-sulfur clusters and a spin-coupled ubiquinone pair in the mitochondrial membraneQ30413491
Functional and evolutionary relationships among diverse oxygenasesQ33972461
Nucleotide sequence and transcription of the fbc operon from Rhodopseudomonas sphaeroides. Evaluation of the deduced amino acid sequences of the FeS protein, cytochrome b and cytochrome c1.Q34161836
The electron-transport proteins of hydroxylating bacterial dioxygenasesQ34262625
The Pseudomonas putida ML2 plasmid-encoded genes for benzene dioxygenase are unusual in codon usage and low in G+C contentQ34352083
Cloning and nucleotide sequences of NADH-putidaredoxin reductase gene (camA) and putidaredoxin gene (camB) involved in cytochrome P-450cam hydroxylase of Pseudomonas putidaQ34483325
Cloning and expression in Escherichia coli of Pseudomonas strain LB400 genes encoding polychlorinated biphenyl degradationQ35189154
Desaturation, dioxygenation, and monooxygenation reactions catalyzed by naphthalene dioxygenase from Pseudomonas sp. strain 9816-4Q35585218
Purification and characterization of the Comamonas testosteroni B-356 biphenyl dioxygenase componentsQ35598791
Toluene degradation by Pseudomonas putida F1: genetic organization of the tod operonQ36070559
Oxidation of polychlorinated biphenyls by Pseudomonas sp. strain LB400 and Pseudomonas pseudoalcaligenes KF707.Q36103359
Metabolism of naphthalene, fluorene, and phenanthrene: preliminary characterization of a cloned gene cluster from Pseudomonas putida NCIB 9816Q36106630
The effect of ferredoxin(BED) overexpression on benzene dioxygenase activity in Pseudomonas putida ML2Q36107047
Isolation and preliminary characterization of the subunits of the terminal component of naphthalene dioxygenase from Pseudomonas putida NCIB 9816-4.Q36122173
Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenasesQ36152441
Purification and properties of NADH-ferredoxinNAP reductase, a component of naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816.Q36157496
Purification and properties of ferredoxinNAP, a component of naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816.Q36157509
Oxidation of naphthalene by a multicomponent enzyme system from Pseudomonas sp. strain NCIB 9816.Q36310523
The iron complex in spinach ferredoxinQ36381841
Benzylic monooxygenation catalyzed by toluene dioxygenase from Pseudomonas putidaQ36451189
Purification and Properties of Pyrazon Dioxygenase from Pyrazon-Degrading BacteriaQ39144350
Respiratory proteins from extremely thermophilic, aerobic bacteria.Q39507815
Cloning, nucleotide sequence, and expression of the plasmid-encoded genes for the two-component 2-halobenzoate 1,2-dioxygenase from Pseudomonas cepacia 2CBS.Q39835459
Stereospecificity of hydride removal from NADH by reductases of multicomponent nonheme iron oxygenase systemsQ39835560
Oxidation of biphenyl by a multicomponent enzyme system from Pseudomonas sp. strain LB400.Q39895751
Oxidative release of nitrite from 2-nitrotoluene by a three-component enzyme system from Pseudomonas sp. strain JS42.Q39899537
Gene components responsible for discrete substrate specificity in the metabolism of biphenyl (bph operon) and toluene (tod operon).Q39929885
Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102Q39931025
Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82.Q39931564
Pseudomonas aeruginosa 142 uses a three-component ortho-halobenzoate 1,2-dioxygenase for metabolism of 2,4-dichloro- and 2-chlorobenzoateQ39932163
Purification and some properties of 2-halobenzoate 1,2-dioxygenase, a two-component enzyme system from Pseudomonas cepacia 2CBSQ39932942
Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multicomponent polychlorinated-biphenyl-degrading enzyme in Pseudomonas strain LB400Q39933954
Purification and some properties of a soluble benzene-oxidizing system from a strain of PseudomonasQ39940873
Nucleotide sequencing and characterization of the genes encoding benzene oxidation enzymes of Pseudomonas putidaQ39962906
Mutational analysis of assembly and function of the iron-sulfur protein of the cytochrome bc1 complex in Saccharomyces cerevisiae.Q40856735
Recombinant Escherichia coli strains synthesize active forms of naphthalene dioxygenase and its individual alpha and beta subunitsQ41033102
Properties of the iron–sulphur proteins of the benzene dioxygenase system from Pseudomonas putidaQ41543065
Genetic analysis of a relaxed substrate specificity aromatic ring dioxygenase, toluate 1,2-dioxygenase, encoded by TOL plasmid pWW0 of Pseudomonas putidaQ41790386
X-ray absorption spectroscopy of the [2Fe-2S] Rieske cluster in Pseudomonas cepacia phthalate dioxygenase. Determination of core dimensions and iron ligationQ41863554
Purification of isopenicillin N synthetaseQ41980781
Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.Q42622124
Coordination of the Rieske-type [2Fe-2S] cluster of the terminal iron-sulfur protein of Pseudomonas putida benzene 1,2-dioxygenase, studied by one- and two-dimensional electron spin-echo envelope modulation spectroscopyQ42624173
Cloning, nucleotide sequence and characterization of genes encoding naphthalene dioxygenase of Pseudomonas putida strain NCIB9816.Q42655847
An investigation of the iron-sulphur proteins of benzene dioxygenase from Pseudomonas putida by electron-spin-resonance spectroscopyQ42867833
Dioxygen-activating iron center in putidamonooxin. Electron spin resonance investigation of the nitrosylated putidamonooxinQ43705094
Thiolate ligation of the active site Fe2+ of isopenicillin N synthase derives from substrate rather than endogenous cysteine: spectroscopic studies of site-specific Cys----Ser mutated enzymesQ44660060
Electron spin echo envelope modulation spectroscopy supports the suggested coordination of two histidine ligands to the Rieske Fe-S centers of the cytochrome b6f complex of spinach and the cytochrome bc1 complexes of Rhodospirillum rubrum, RhodobactQ45185241
Primary structure of the bc1 complex of Rhodopseudomonas capsulata. Nucleotide sequence of the pet operon encoding the Rieske cytochrome b, and cytochrome c1 apoproteinsQ45210054
Mössbauer spectroscopic studies of the terminal dioxygenase protein of benzene dioxygenase from Pseudomonas putidaQ46588803
Sequence and expression of the bpdC1C2BADE genes involved in the initial steps of biphenyl/chlorobiphenyl degradation by Rhodococcus sp. M5Q48069837
The nucleotide sequence of the Tn5271 3-chlorobenzoate 3,4-dioxygenase genes (cbaAB) unites the class IA oxygenases in a single lineageQ48075298
Crystallographic determination of the active site iron and its ligands in soybean lipoxygenase L-1Q53057375
ESEEM and ENDOR studies of the Rieske iron-sulphur protein in bovine heart mitochondrial membranes.Q54164221
Substitution of the ISP alpha subunit of biphenyl dioxygenase from Pseudomonas results in a modification of the enzyme activity.Q54625451
Cloning and expression of the plasmid-encoded benzene dioxygenase genes from Pseudomonas putida ML2.Q54706816
Structure, function and evolution of bacterial ferredoxinsQ56474688
Microbial oxidation in synthesis: A six step perparation of (+)-pinitol from benzeneQ56954486
Magnetic circular dichroism studies on the mononuclear ferrous active site of phthalate dioxygenase from Pseudomonas cepacia show a change of ligation state on substrate bindingQ57537787
Potential ligands to the [2Fe-2S] Rieske cluster of the cytochrome bc1 complex of Rhodobacter capsulatus probed by site-directed mutagenesisQ67487125
Primary structure of protein B from Pseudomonas putida, member of a new class of 2Fe-2S ferredoxinsQ68325594
Mössbauer parameters of putidaredoxin and its selenium analogQ68637807
Mechanistic studies on phenylalanine hydroxylase from Chromobacterium violaceum. Evidence for the formation of an enzyme-oxygen complexQ69608536
Electron-nuclear double resonance spectroscopy of 15N-enriched phthalate dioxygenase from Pseudomonas cepacia proves that two histidines are coordinated to the [2Fe-2S] Rieske-type clustersQ69692785
Comparison of the spin-lattice relaxation properties of the two classes of [2Fe-2S] clusters in proteinsQ69808878
Dioxygen activation by putidamonooxin: substrate-modulated reaction of activated dioxygenQ70330558
Incorporation of oxygen-18 into benzene by Pseudomonas putidaQ71483340
Stereospecific Sulfoxidation by Toluene and Naphthalene DioxygenasesQ71880156
Mossbauer Studies on the Active Fe ...[2Fe-2S] Site of Putidamonooxin, Its Electron Transport and Dioxygen Activation MechanismQ72920265
P304page(s)47-84
P577publication date1997-01-01
P1433published inAdvances in Microbial PhysiologyQ15753070
P1476titleStructure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases
P478volume38

Reverse relations

cites work (P2860)
Q27629759A cluster exposed: structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins
Q43680524A comprehensive phylogenetic analysis of Rieske and Rieske-type iron-sulfur proteins
Q28754758A new classification system for bacterial Rieske non-heme iron aromatic ring-hydroxylating oxygenases
Q24544153Aerobic benzoyl-coenzyme A (CoA) catabolic pathway in Azoarcus evansii: conversion of ring cleavage product by 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase
Q39679584Alteration of regiospecificity in biphenyl dioxygenase by active-site engineering
Q41030339Analysis of ecotoxic influence of waste from the biomass gasification process
Q42429734Analysis of multi-domain hypothetical proteins containing iron-sulphur clusters and fad ligands reveal rieske dioxygenase activity suggesting their plausible roles in bioremediation
Q33941468Aromatic hydrocarbon dioxygenases in environmental biotechnology
Q33991496Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity.
Q28539695Assessment of bacterial bph gene in Amazonian dark earth and their adjacent soils
Q42424477Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: links between benzene biodegradation and genes similar to those encoding isopropylbenzene dioxygenases
Q24523694Bioconversion of ferulic acid into vanillic acid by means of a vanillate-negative mutant of Pseudomonas fluorescens strain BF13
Q28208239Biodegradation of aromatic compounds by Escherichia coli
Q46760259Biodegradation of n-alkylcyclohexanes by co-oxidation via multiple pathways in Acinetobacter sp. ODDK71.
Q39491858Biotransformation of various substituted aromatic compounds to chiral dihydrodihydroxy derivatives
Q35855080Biphenyl dioxygenases: functional versatilities and directed evolution
Q33293920Changes in bacterial populations and in biphenyl dioxygenase gene diversity in a polychlorinated biphenyl-polluted soil after introduction of willow trees for rhizoremediation
Q33995178Characterization and evolution of anthranilate 1,2-dioxygenase from Acinetobacter sp. strain ADP1.
Q43769883Characterization of Rhodococcus opacus R7, a strain able to degrade naphthalene and o-xylene isolated from a polycyclic aromatic hydrocarbon-contaminated soil
Q42176077Characterization of biphenyl dioxygenase sequences and activities encoded by the metagenomes of highly polychlorobiphenyl-contaminated soils
Q42122224Characterization of novel carbazole catabolism genes from gram-positive carbazole degrader Nocardioides aromaticivorans IC177.
Q24520914Characterization of the hca cluster encoding the dioxygenolytic pathway for initial catabolism of 3-phenylpropionic acid in Escherichia coli K-12.
Q33984916Cloning, expression, and nucleotide sequence of the Pseudomonas aeruginosa 142 ohb genes coding for oxygenolytic ortho dehalogenation of halobenzoates.
Q33199044Construction of chimeric catechol 2,3-dioxygenase exhibiting improved activity against the suicide inhibitor 4-methylcatechol.
Q58895281Degradation of naphthalene by bacterial cultures
Q60442737Development of biocatalysts carrying naphthalene dioxygenase and dihydrodiol dehydrogenase genes inducible in aerobic and anaerobic conditions
Q37165759Diversity of microbial toluene degradation pathways
Q38009791Epoxy Coenzyme A Thioester pathways for degradation of aromatic compounds
Q40419824Functional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp. PNB.
Q33235519Generation of novel-substrate-accepting biphenyl dioxygenases through segmental random mutagenesis and identification of residues involved in enzyme specificity
Q33852477Genetic and chemical characterization of ibuprofen degradation by Sphingomonas Ibu-2.
Q37608320Genome wide survey and molecular modeling of hypothetical proteins containing 2Fe-2S and FMN binding domains suggests Rieske Dioxygenase Activity highlighting their potential roles in bioremediation
Q33738761Identification of chlorobenzene dioxygenase sequence elements involved in dechlorination of 1,2,4,5-tetrachlorobenzene.
Q30769418Integration of matrix-assisted laser desorption ionization-time of flight mass spectrometry and molecular cloning for the identification and functional characterization of mobile ortho-halobenzoate oxygenase genes in Pseudomonas aeruginosa strain JB
Q78780106Isolation and characterization of cytidine-5'-monophosphate-N-acetylneuraminate hydroxylase from the starfish Asterias rubens
Q33847967Mechanism and selectivity of the dinuclear iron benzoyl-coenzyme A epoxidase BoxB.
Q37941366Microbial degradation of aromatic compounds - from one strategy to four
Q41610146Nitrate assimilation by bacteria.
Q44234228Phenylacetate metabolism in thermophiles: characterization of phenylacetate-CoA ligase, the initial enzyme of the hybrid pathway in Thermus thermophilus
Q34555810Phytoremediation of polyaromatic hydrocarbons, anilines and phenols
Q40173878Pinpointing Biphenyl Dioxygenase Residues That Are Crucial for Substrate Interaction
Q39547771Purification and characterization of a novel naphthalene dioxygenase from Rhodococcus sp. strain NCIMB12038.
Q36313367Purification and characterization of a three-component salicylate 1-hydroxylase from Sphingomonas sp. strain CHY-1
Q24537314Purification and characterization of carbazole 1,9a-dioxygenase, a three-component dioxygenase system of Pseudomonas resinovorans strain CA10
Q28776477Recent advances in petroleum microbiology
Q39678463Salicylate 5-hydroxylase from Ralstonia sp. strain U2: a monooxygenase with close relationships to and shared electron transport proteins with naphthalene dioxygenase
Q33736446Similarities between the antABC-encoded anthranilate dioxygenase and the benABC-encoded benzoate dioxygenase of Acinetobacter sp. strain ADP1.
Q27759020Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase
Q42108056Studies on the mechanism of ring hydrolysis in phenylacetate degradation: a metabolic branching point
Q39565753Substrate specificities of hybrid naphthalene and 2,4-dinitrotoluene dioxygenase enzyme systems
Q33994059Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme
Q41890488Subtle difference between benzene and toluene dioxygenases of Pseudomonas putida
Q47749982The alkene monooxygenase from Xanthobacter Py2 is a binuclear non-haem iron protein closely related to toluene 4-monooxygenase
Q24550569The alkene monooxygenase from Xanthobacter strain Py2 is closely related to aromatic monooxygenases and catalyzes aromatic monohydroxylation of benzene, toluene, and phenol
Q33984140The alpha subunit of toluene dioxygenase from Pseudomonas putida F1 can accept electrons from reduced FerredoxinTOL but is catalytically inactive in the absence of the beta subunit.
Q27640651The catalytic pocket of the ring-hydroxylating dioxygenase from Sphingomonas CHY-1
Q59152449The microbial degradation of halogenated diaryl ethers
Q42575479ThnY is a ferredoxin reductase-like iron-sulfur flavoprotein that has evolved to function as a regulator of tetralin biodegradation gene expression
Q36746788Two angular dioxygenases contribute to the metabolic versatility of dibenzofuran-degrading Rhodococcus sp. strain HA01
Q27639085X-ray crystal structure of benzoate 1,2-dioxygenase reductase from Acinetobacter sp. strain ADP1
Q93381110pahE, a Functional Marker Gene for Polycyclic Aromatic Hydrocarbon-Degrading Bacteria

Search more.