The Human MitoChip: a high-throughput sequencing microarray for mitochondrial mutation detection.

scientific article published on May 2004

The Human MitoChip: a high-throughput sequencing microarray for mitochondrial mutation detection. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1101/GR.2228504
P932PMC publication ID479107
P698PubMed publication ID15123581
P5875ResearchGate publication ID8581154

P50authorYoram CohenQ39063399
Mohammad Obaidul HoqueQ58472169
Anirban MaitraQ63019787
Michael GogginsQ63021511
Noriyoshi FukushimaQ91795800
Joseph A CalifanoQ98733558
David SidranskyQ106888457
Elizabeth MamboQ114442434
P2093author name stringAravinda Chakravarti
Nila Shah
Susannah E D Gillespie
P2860cites workLight-generated oligonucleotide arrays for rapid DNA sequence analysisQ24563041
High-throughput variation detection and genotyping using microarraysQ24617968
Rapid p53 sequence analysis in primary lung cancer using an oligonucleotide probe arrayQ24648335
Base-calling of automated sequencer traces using phred. II. Error probabilitiesQ27860615
Base-calling of automated sequencer traces using phred. I. Accuracy assessmentQ27860665
Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNAQ27860870
Facile detection of mitochondrial DNA mutations in tumors and bodily fluidsQ28138849
A National Cancer Institute Workshop on Microsatellite Instability for cancer detection and familial predisposition: development of international criteria for the determination of microsatellite instability in colorectal cancerQ28289377
High density synthetic oligonucleotide arraysQ29616560
PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencingQ29618564
Molecular profiling of human cancerQ30659943
Use of proteomic patterns in serum to identify ovarian cancerQ30819686
Extensive somatic mitochondrial mutations in primary prostate cancer using laser capture microdissectionQ30870711
Early detection of lung cancer: clinical perspectives of recent advances in biology and radiologyQ30980947
High-performance genetic analysis using microfabricated capillary array electrophoresis microplatesQ31028997
Cancer statistics, 2000.Q33895772
Mitochondrial genome instability in human cancersQ34164887
Somatic mutations of the mitochondrial genome in human colorectal tumoursQ34478926
Mitochondrial DNA alterations in cancer.Q34718441
Light-directed, spatially addressable parallel chemical synthesisQ35012280
Rapid screening mitochondrial DNA mutation by using denaturing high-performance liquid chromatographyQ36308510
Strategies for mutational analysis of the large multiexon ATM gene using high-density oligonucleotide arraysQ38330003
Detecting colorectal cancer in stool with the use of multiple genetic targetsQ39569642
Detection of APC mutations in fecal DNA from patients with colorectal tumorsQ39592582
Resequencing and mutational analysis using oligonucleotide microarraysQ40827778
Comparison of TP53 mutations identified by oligonucleotide microarray and conventional DNA sequence analysisQ41737680
Evaluation of the performance of a p53 sequencing microarray chip using 140 previously sequenced bladder tumor samples.Q51603995
Detection of mitochondrial DNA mutations in pancreatic cancer offers a "mass"-ive advantage over detection of nuclear DNA mutations.Q52067109
Accessing genetic information with high-density DNA arrays.Q52293633
Mitochondrial C-tract alteration in premalignant lesions of the head and neck: a marker for progression and clonal proliferation.Q53388599
Identification of a mononucleotide repeat as a major target for mitochondrial DNA alterations in human tumorsQ57240044
Mitochondrial mutations in early stage prostate cancer and bodily fluidsQ62523597
Molecular detection of primary bladder cancer by microsatellite analysisQ70923967
Mitochondrial DNA alterations in thyroid cancerQ73083509
Mitochondrial gene mutation, but not large-scale deletion, is a feature of colorectal carcinomas with mitochondrial microsatellite instabilityQ73083931
Microsatellite instability and mutation of mitochondrial and nuclear DNA in gastric carcinomaQ73719421
Nuclear and mitochondrial genome instability in human breast cancerQ74181156
Detection of mitochondrial DNA mutations in primary breast cancer and fine-needle aspiratesQ74631084
Detection of mitochondrial DNA alterations in the serum of hepatocellular carcinoma patientsQ74787904
Detection of mitochondrial DNA alterations in primary tumors and corresponding serum of colorectal cancer patientsQ77357632
Mitochondrial D-loop mutations as clonal markers in multicentric hepatocellular carcinoma and plasmaQ77626777
P433issue5
P921main subjecthigh-throughput sequencingQ112147935
P304page(s)812-819
P577publication date2004-05-01
P1433published inGenome ResearchQ5533485
P1476titleThe Human MitoChip: a high-throughput sequencing microarray for mitochondrial mutation detection
P478volume14

Reverse relations

cites work (P2860)
Q36099019A Cost-Effective Approach to Sequence Hundreds of Complete Mitochondrial Genomes
Q57161603A DNA resequencing array for pathogenic mutation detection in hypertrophic cardiomyopathy
Q36328949A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip whole-genome resequencing platform
Q36683816A focused microarray to study human mitochondrial and nuclear gene expression.
Q54623162A microarray system for genotyping 150 single nucleotide polymorphisms in the coding region of human mitochondrial DNA.
Q33254469A molecular scheme for improved characterization of human embryonic stem cell lines
Q50526524A new mitochondria-related disease showing myopathy with episodic hyper-creatine kinase-emia.
Q40139889A panel of tests to standardize the characterization of human embryonic stem cells
Q36411661Affymetrix GeneChip system: moving from research to the clinic
Q37724464An equipment-free polydimethylsiloxane microfluidic spotter for fabrication of microarrays
Q35790280An oligonucleotide microarray for high-throughput sequencing of the mitochondrial genome
Q31167061Animal phylogenomics: multiple interspecific genome comparisons
Q36481133Application of oligonucleotide arrays to high-content genetic analysis
Q36691728Arrayed identification of DNA signatures
Q90571450Associations of Peripheral Artery Disease With Calf Skeletal Muscle Mitochondrial DNA Heteroplasmy
Q37861341Automated identification of multiple micro-organisms from resequencing DNA microarrays
Q37623418Biocomplexity and Fractality in the Search of Biomarkers of Aging and Pathology: Focus on Mitochondrial DNA and Alzheimer's Disease
Q33520448Biomarker Validation for Aging: Lessons from mtDNA Heteroplasmy Analyses in Early Cancer Detection.
Q37148779Biomarkers in gastrointestinal cancers
Q27990522Chip-based mtDNA mutation screening enables fast and reliable genetic diagnosis of OXPHOS patients
Q37112499Comparing whole genomes using DNA microarrays
Q24792059Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays
Q34238839Complete mitochondrial genome sequencing reveals novel haplotypes in a Polynesian population.
Q27006760Composition of the early intestinal microbiota: knowledge, knowledge gaps and the use of high-throughput sequencing to address these gaps
Q34658510Comprehensive association testing of common mitochondrial DNA variation in metabolic disease
Q34936714Contribution of non-reference alleles in mtDNA of Alzheimer's disease patients
Q45861453DNA microarray analysis for the detection of mutations in hemophilia A.
Q33494042Detection of genomic variation by selection of a 9 mb DNA region and high throughput sequencing
Q36796259Detection of mutations in mtDNA.
Q37653128Detection of specific chromosomal aberrations in urine using BCA-1 (oligo-CGH-array) enhances diagnostic sensitivity and predicts the aggressiveness of non-muscle-invasive bladder transitional cell carcinoma
Q54613942Development of a human mitochondria-focused cDNA microarray (hMitChip) and validation in skeletal muscle cells: implications for pharmaco- and mitogenomics.
Q24802773Diagnosis of HNF-1alpha mutations on a PNA zip-code microarray by single base extension
Q36662396Differences in mtDNA haplogroup distribution among 3 Jewish populations alter susceptibility to T2DM complications.
Q33361663Distilling artificial recombinants from large sets of complete mtDNA genomes
Q28272506Effect of mtDNA mutation on tumor malignant degree in patients with prostate cancer
Q33548726Empirical evaluation of oligonucleotide probe selection for DNA microarrays
Q39256165Erythrocytosis in hepatocellular carcinoma portends poor prognosis by respiratory dysfunction secondary to mitochondrial DNA mutations
Q44783293Extensive and rapid screening for major mitochondrial DNA point mutations in patients with hereditary hearing loss
Q54446837Extensive screening system using suspension array technology to detect mitochondrial DNA point mutations.
Q33292683External contamination in single cell mtDNA analysis
Q33327587Facile whole mitochondrial genome resequencing from nipple aspirate fluid using MitoChip v2.0.
Q34645886Familial pancreatic cancer: the case for prophylactic pancreatectomy in lieu of serial screening and shared decision making
Q33491002Following mitochondrial footprints through a long mucosal path to lung cancer
Q24674610Frequency and phenotypic implications of mitochondrial DNA mutations in human squamous cell cancers of the head and neck
Q51073392Full-Length Mitochondrial-DNA Sequencing on the PacBio RSII.
Q57395946GeneChips in Stem Cell Research
Q40377467Genomic alterations in cultured human embryonic stem cells
Q54443315Genotyping mitochondrial DNA single nucleotide polymorphisms by PCR ligase detection reactions.
Q35222494Heteroplasmic mitochondrial DNA mutations in normal and tumour cells
Q36497083High-throughput mutational analysis of the human cancer genome
Q35595744High-throughput retina-array for screening 93 genes involved in inherited retinal dystrophy
Q53183619Highly Ordered Arrays of Femtoliter Surface Droplets.
Q22252348How do changes in the mtDNA and mitochondrial dysfunction influence cancer and cancer therapy? Challenges, opportunities and models
Q43223092Identification of frequent chromosome copy-number polymorphisms by use of high-resolution single-nucleotide-polymorphism arrays
Q36328508Identifying molecular markers for the early detection of pancreatic neoplasia
Q24683257Impaired FGF signaling contributes to cleft lip and palate
Q37152683Inosine triphosphate pyrophosphohydrolase (ITPA) polymorphic sequence variants in adult hematological malignancy patients and possible association with mitochondrial DNA defects
Q34051752Insights into N-calls of mitochondrial DNA sequencing using MitoChip v2.0.
Q33300291Interspecies hybridization on DNA resequencing microarrays: efficiency of sequence recovery and accuracy of SNP detection in human, ape, and codfish mitochondrial DNA genomes sequenced on a human-specific MitoChip
Q42182427Intraspecific phylogeographic genomics from multiple complete mtDNA genomes in Atlantic cod (Gadus morhua): origins of the "codmother," transatlantic vicariance and midglacial population expansion
Q41915881MITOMASTER: a bioinformatics tool for the analysis of mitochondrial DNA sequences
Q21145264Matrix-assisted laser desorption/ionisation, time-of-flight mass spectrometry in genomics research
Q36399439Microarray technology: beyond transcript profiling and genotype analysis
Q24805498Microarray-based resequencing of multiple Bacillus anthracis isolates
Q39448724Mitochondria and cancer: past, present, and future
Q36359505Mitochondria as a target for early detection and diagnosis of cancer
Q36366516Mitochondrial DNA Mutations in Grade II and III Glioma Cell Lines Are Associated with Significant Mitochondrial Dysfunction and Higher Oxidative Stress
Q34447747Mitochondrial DNA Sequence Variation Associated With Peripheral Nerve Function in the Elderly
Q35789945Mitochondrial DNA as a cancer biomarker
Q89467884Mitochondrial DNA m.13514G>A heteroplasmy is associated with depressive symptoms in the elderly
Q36557982Mitochondrial DNA mutations in human cancer
Q28247396Mitochondrial DNA mutations in pancreatic cancer
Q35574219Mitochondrial DNA mutations in preneoplastic lesions of the gastrointestinal tract: a biomarker for the early detection of cancer
Q35729786Mitochondrial DNA sequence variation and risk of pancreatic cancer
Q34140769Mitochondrial DNA sequence variation associated with dementia and cognitive function in the elderly
Q30417487Mitochondrial DNA sequence variation is associated with free-living activity energy expenditure in the elderly
Q33443895Mitochondrial DNA variants of respiratory complex I that uniquely characterize haplogroup T2 are associated with increased risk of age-related macular degeneration
Q37260045Mitochondrial and nuclear genes of mitochondrial components in cancer
Q34826613Mitochondrial common deletion, a potential biomarker for cancer occurrence, is selected against in cancer background: a meta-analysis of 38 studies
Q34526536Mitochondrial disease genetic diagnostics: optimized whole-exome analysis for all MitoCarta nuclear genes and the mitochondrial genome
Q36666800Mitochondrial disease: maintenance of mitochondrial genome and molecular diagnostics
Q37618225Mitochondrial gene profiling: translational perspectives
Q38089732Mitochondrial genome analysis in biofluids for early cancer detection and monitoring
Q34051544Mitochondrial genome sequence analysis: a custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy.
Q33521198Mitochondrial mutations in adenoid cystic carcinoma of the salivary glands
Q37430656Mitochondrial polymorphisms impact outcomes after severe traumatic brain injury
Q35819374Mitochondrial subversion in cancer
Q33418617Mitochondrial variants in schizophrenia, bipolar disorder, and major depressive disorder
Q34367770Mitochondrial-nuclear epistasis: implications for human aging and longevity
Q28305528Mitogenomic and microsatellite variation in descendants of the founder population of Newfoundland: high genetic diversity in an historically isolated population
Q36064579Molecular analysis of pancreatic juice: a helpful tool to differentiate benign and malignant pancreatic tumors?
Q36485336Molecular genetics of pancreatic ductal adenocarcinomas and recent implications for translational efforts
Q38520403Molecular markers in bladder cancer: Novel research frontiers
Q37081461Molecular markers of pancreatic cancer: development and clinical relevance
Q38703672MtDNA As a Cancer Marker: A Finally Closed Chapter?
Q33318717Multiple strand displacement amplification of mitochondrial DNA from clinical samples
Q34468858Next-generation sequencing of human mitochondrial reference genomes uncovers high heteroplasmy frequency
Q38286089Noninvasive approaches for detecting and monitoring bladder cancer
Q36589155Opportunities and challenges for selected emerging technologies in cancer epidemiology: mitochondrial, epigenomic, metabolomic, and telomerase profiling
Q36896536Pancreatic cancer screening
Q33373844Performance of mitochondrial DNA mutations detecting early stage cancer
Q33733649Potential pitfalls in MitoChip detected tumor-specific somatic mutations: a call for caution when interpreting patient data
Q37206617Prevalence of rare mitochondrial DNA mutations in mitochondrial disorders
Q34035565Rapid identification of a novel complex I MT-ND3 m.10134C>A mutation in a Leigh syndrome patient
Q48105064Recent Advances in Detecting Mitochondrial DNA Heteroplasmic Variations.
Q33520355ReseqChip: automated integration of multiple local context probe data from the MitoChip array in mitochondrial DNA sequence assembly
Q36344973Sequence-specific nucleic acid detection from binary pore conductance measurement
Q35790237Somatic mitochondrial DNA mutations in prostate cancer and normal appearing adjacent glands in comparison to age-matched prostate samples without malignant histology
Q24564006Strategies for early detection of resectable pancreatic cancer
Q34411977T cell activation markers and African mitochondrial DNA haplogroups among non-Hispanic black participants in AIDS clinical trials group study 384.
Q36577260Technology Insight: querying the genome with microarrays--progress and hope for neurological disease
Q34039684Testicular cancer survivorship: research strategies and recommendations
Q35718294The awakening of an advanced malignant cancer: an insult to the mitochondrial genome
Q38089243The mitochondrial genome: a biosensor for early cancer detection?
Q28768152The pseudo-mitochondrial genome influences mistakes in heteroplasmy interpretation
Q36944218Toward a new era in sequencing
Q27990530Validation of microarray-based resequencing of 93 worldwide mitochondrial genomes
Q50456640Whole mitochondrial genome screening in maternally inherited non-syndromic hearing impairment using a microarray resequencing mitochondrial DNA chip.
Q42696451mit-o-matic: a comprehensive computational pipeline for clinical evaluation of mitochondrial variations from next-generation sequencing datasets