DIANA-TarBase and DIANA Suite Tools: Studying Experimentally Supported microRNA Targets

scientific article published on 7 September 2016

DIANA-TarBase and DIANA Suite Tools: Studying Experimentally Supported microRNA Targets is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/CPBI.12
P698PubMed publication ID27603020

P2093author name stringIoannis S Vlachos
Artemis G Hatzigeorgiou
Maria D Paraskevopoulou
P2860cites workTarBase: A comprehensive database of experimentally supported animal microRNA targetsQ24537513
Experimental strategies for microRNA target identificationQ24603494
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIPQ24630900
Argonaute HITS-CLIP decodes microRNA-mRNA interaction mapsQ24645826
Experimental validation of miRNA targetsQ24651237
RAS is regulated by the let-7 microRNA familyQ27860522
Widespread changes in protein synthesis induced by microRNAsQ27860886
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomicsQ28131742
A gene network for navigating the literatureQ28269528
Global analysis of cellular protein translation by pulsed SILACQ28302639
Ensembl 2016Q28603093
miRBase: annotating high confidence microRNAs using deep sequencing dataQ28660701
miRBase: microRNA Sequences and AnnotationQ29030445
UniProt: a hub for protein informationQ29547457
STRING v10: protein-protein interaction networks, integrated over the tree of lifeQ29615545
Gene silencing by microRNAs: contributions of translational repression and mRNA decayQ29615825
Rapid identification of regulatory microRNAs by miTRAP (miRNA trapping by RNA in vitro affinity purification).Q30577354
Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradomeQ33413039
A functional assay for microRNA target identification and validationQ34155928
3'LIFE: a functional assay to detect miRNA targets in high-throughputQ34248768
Unambiguous identification of miRNA:target site interactions by different types of ligation reactionsQ34273614
Validation of miRNA-mRNA interactions by electrophoretic mobility shift assaysQ35038539
Mapping the miRNA interactome by cross-linking ligation and sequencing of hybrids (CLASH)Q35104194
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions.Q35254443
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental supportQ35631073
DIANA-miRPath v3.0: deciphering microRNA function with experimental supportQ35810103
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts.Q35854312
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflowsQ36953893
The database of experimentally supported targets: a functional update of TarBaseQ37202497
MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationshipQ37992965
Online resources for miRNA analysis.Q38091847
Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522.Q38965159
MicroRNA-124 suppresses breast cancer cell growth and motility by targeting CD151.Q39132211
Functional microRNA targets in protein coding sequencesQ42634002
Performing the Labeled microRNA pull-down (LAMP) assay system: an experimental approach for high-throughput identification of microRNA-target mRNAsQ84543641
P921main subjectmicroRNAQ310899
P304page(s)12.14.1-12.14.18
P577publication date2016-09-07
P1433published inCurrent Protocols in BioinformaticsQ26842707
P1476titleDIANA-TarBase and DIANA Suite Tools: Studying Experimentally Supported microRNA Targets
P478volume55

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cites work (P2860)
Q52322083A meta-analysis of public microarray data identifies biological regulatory networks in Parkinson's disease.
Q91642261Associations between Maternal Tobacco Smoke Exposure and the Cord Blood [Formula: see text] DNA Methylome
Q90288065Depletion of Ars2 inhibits cell proliferation and leukemogenesis in acute myeloid leukemia by modulating the miR-6734-3p/p27 axis
Q92712679Differentially Expressed MiRNAs and tRNA Genes Affect Host Homeostasis During Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus Infections in Young Pigs
Q58769098Differentially Tolerized Mouse Antigen Presenting Cells Share a Common miRNA Signature Including Enhanced mmu-miR-223-3p Expression Which Is Sufficient to Imprint a Protolerogenic State
Q36185927Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma
Q97885895Integrated Transcriptome Analysis of Human Visceral Adipocytes Unravels Dysregulated microRNA-Long Non-coding RNA-mRNA Networks in Obesity and Colorectal Cancer
Q91738984Integrated analysis of lncRNA CTD-2357A8.3 expression and its potential roles in head and neck squamous cell carcinoma
Q50574185MicroRNA-34a inhibits tumor invasion and metastasis in osteosarcoma partly by effecting C-IAP2 and Bcl-2.
Q37724885Pediatric Ependymoma: A Proteomics Perspective

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