High throughput sequencing reveals a plethora of small RNAs including tRNA derived fragments in Haloferax volcanii.

scientific article published on July 2012

High throughput sequencing reveals a plethora of small RNAs including tRNA derived fragments in Haloferax volcanii. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.4161/RNA.20826
P932PMC publication ID3495736
P698PubMed publication ID22767255
P5875ResearchGate publication ID228331042

P50authorJörg SoppaQ42393991
P2093author name stringAnita Marchfelder
Bettina Späth
Angelika Jellen-Ritter
Ruth Heyer
Julia Babski
Katharina Jaschinski
Marcella Dörr
P2860cites workThe complete genome sequence of Haloferax volcanii DS2, a model archaeonQ21562676
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus.Q24530580
Noncoding RNA genes identified in AT-rich hyperthermophilesQ24530589
Assigning a function to a conserved group of proteins: the tRNA 3'-processing enzymesQ24536637
Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNAQ24621787
Transfer RNA-derived fragments: origins, processing, and functionsQ26864882
Small RNAs for defence and regulation in archaeaQ26998827
Regulation by small RNAs in bacteria: expanding frontiersQ27009044
Mammalian microRNAs predominantly act to decrease target mRNA levelsQ27860535
The widespread regulation of microRNA biogenesis, function and decayQ28131796
A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).Q30436133
Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea.Q30838193
Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii.Q30932558
Small RNAs in haloarchaea: identification, differential expression and biological functionQ33424292
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAsQ33511934
A single-base resolution map of an archaeal transcriptomeQ33560237
RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processingQ33560287
Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.Q33564641
Non-coding RNAs: hope or hype?Q33986629
Functional genomic and advanced genetic studies reveal novel insights into the metabolism, regulation, and biology of Haloferax volcanii.Q34108405
An expanding universe of noncoding RNAsQ34129019
Regulatory RNAs derived from transfer RNA?Q34135124
Archaeal genetics - the third way.Q34381254
Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE geneQ34513433
A three-dimensional view of the molecular machinery of RNA interferenceQ34926596
miRNAs get an early start on translational silencingQ36965104
Bacterial chromosome-encoded small regulatory RNAsQ37389545
The making of tRNAs and more - RNase P and tRNase Z.Q37392517
Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and SulfolobalesQ37832278
Searching for RNA genes using base-composition statisticsQ39600661
Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcaniiQ39606788
Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genesQ40604361
Maturation of the 5S rRNA 5' end is catalyzed in vitro by the endonuclease tRNase Z in the archaeon H. volcaniiQ43024327
Small RNAs of the halophilic archaeon Haloferax volcaniiQ43026107
Regulatory RNAs in Haloferax volcaniiQ43030235
Phenotyping in the archaea: optimization of growth parameters and analysis of mutants of Haloferax volcaniiQ43031763
Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeonHaloferax volcaniiQ59891132
P433issue7
P921main subjectHaloferax volcaniiQ16982678
high-throughput sequencingQ112147935
P304page(s)1011-1018
P577publication date2012-07-01
P1433published inRNA BiologyQ7277167
P1476titleHigh throughput sequencing reveals a plethora of small RNAs including tRNA derived fragments in Haloferax volcanii
P478volume9

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cites work (P2860)
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Q42720149tRNA-derived fragments target the ribosome and function as regulatory non-coding RNA in Haloferax volcanii

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