A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities

scientific article published on July 2006

A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/AEM.02949-05
P932PMC publication ID1489359
P698PubMed publication ID16820477
P5875ResearchGate publication ID6965442

P50authorFrank Oliver GlöcknerQ28913667
Jörg PepliesQ114411675
P2093author name stringChristine Lachmund
Werner Manz
P2860cites workFluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteriaQ24536329
Phylogenetic identification and in situ detection of individual microbial cells without cultivationQ24651527
ARB: a software environment for sequence dataQ29547354
DNA extraction from soils: old bias for new microbial diversity analysis methodsQ30665403
Development and validation of a diagnostic microbial microarray for methanotrophsQ30951671
Taxonomic heterogeneity within the Planctomycetales as derived by DNA-DNA hybridization, description of Rhodopirellula baltica gen. nov., sp. nov., transfer of Pirellula marina to the genus Blastopirellula gen. nov. as Blastopirellula marina comb. nQ30962256
Real-time detection of nucleic acid interactions by total internal reflection fluorescenceQ30976672
16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales"Q33716528
Development and evaluation of functional gene arrays for detection of selected genes in the environmentQ33990933
Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparencyQ33995905
Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology.Q34101140
High-density microarray of small-subunit ribosomal DNA probesQ34114910
Optimization of single-base-pair mismatch discrimination in oligonucleotide microarraysQ34986525
Sequence versus Structure for the Direct Detection of 16S rRNA on Planar Oligonucleotide MicroarraysQ34987056
Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarraysQ34992517
probeBase: an online resource for rRNA-targeted oligonucleotide probesQ35158030
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCRQ35188832
Crenarchaeota in Lake Michigan sedimentQ35198935
Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology.Q35202214
In situ visualization of high genetic diversity in a natural microbial communityQ35608488
Oligonucleotide microarrays in microbial diagnosticsQ35804673
Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supportsQ35874457
Use of phylogenetically based hybridization probes for studies of ruminal microbial ecologyQ36070029
Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probesQ38357004
An evaluation of tyramide signal amplification and archived fixed and frozen tissue in microarray gene expression analysisQ38458216
Characterization of the microbial community of lotic organic aggregates ('river snow') in the Elbe River of Germany by cultivation and molecular methods.Q39120042
Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profilingQ39492038
Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environmentQ39648709
An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridizationQ39750614
Characterization of a spontaneous nonmagnetic mutant of Magnetospirillum gryphiswaldense reveals a large deletion comprising a putative magnetosome islandQ39887854
Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysisQ41694742
Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach.Q43808595
RNA isolation from soil for bacterial community and functional analysis: evaluation of different extraction and soil conservation protocolsQ44074113
Isolation of small-subunit rRNA for stable isotopic characterization.Q44086617
Multivariate analysis of microbial communities in the River Elbe (Germany) on different phylogenetic and spatial levels of resolutionQ46382912
Array of hopeQ47606760
16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detectionQ48343659
Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communitiesQ49153203
Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton.Q54717678
Critical factors influencing the recovery and integrity of rRNA extracted from environmental samples: use of an optimized protocol to measure depth-related biomass distribution in freshwater sedimentsQ73503730
Determining the influence of structure on hybridization using oligonucleotide arraysQ78071041
An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sedimentsQ84478232
P433issue7
P407language of work or nameEnglishQ1860
P921main subjectfresh waterQ102192
P304page(s)4829-4838
P577publication date2006-07-01
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleA DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities
P478volume72

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cites work (P2860)
Q35795568An overview of recent strategies in pathogen sensing
Q33719379Beyond Affymetrix arrays: expanding the set of known hybridization isotherms and observing pre-wash signal intensities
Q39893359CULTURE CONDITIONS INFLUENCE CELLULAR RNA CONTENT IN ICHTHYOTOXIC FLAGELLATES OF THE GENUS PSEUDOCHATTONELLA (DICTYOCHOPHYCEAE)(1).
Q33617343Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome
Q35913112DNA microarray-based identification of serogroups and virulence gene patterns of Escherichia coli isolates associated with porcine postweaning diarrhea and edema disease
Q33287609Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring
Q37672630Food Waste to Energy: An Overview of Sustainable Approaches for Food Waste Management and Nutrient Recycling
Q41758023Light Weight and Flexible High-Performance Diagnostic Platform
Q33798216Molecular Techniques for the Detection of Organisms in Aquatic Environments, with Emphasis on Harmful Algal Bloom Species
Q33963322PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip
Q37545310Specific discrimination of three pathogenic Salmonella enterica subsp. enterica serotypes by carB-based oligonucleotide microarray

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