Identification of a novel carbohydrate esterase from Bjerkandera adusta: structural and function predictions through bioinformatics analysis and molecular modeling

scientific article published on 24 January 2015

Identification of a novel carbohydrate esterase from Bjerkandera adusta: structural and function predictions through bioinformatics analysis and molecular modeling is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1002/PROT.24760
P698PubMed publication ID25586442
P5875ResearchGate publication ID270965313

P50authorNina PastorQ56994921
Ramón Alberto Batista-GarcíaQ59684959
Jorge Folch-MallolQ59684972
Veronica Lira RuanQ74185464
Gilberto Valdes-GarciaQ85655292
P2093author name stringEdgar Balcázar-López
Laura I Cuervo-Soto
María del Rayo Sánchez-Carbente
P2860cites workMolecular characterization of a new acetyl xylan esterase (AXEII) from edible straw mushroom Volvariella volvacea with both de-O-acetylation and de-N-acetylation activityQ43500569
Expression, purification, and characterization of a cobalt-activated chitin deacetylase (Cda2p) from Saccharomyces cerevisiaeQ43867018
Carbohydrate esterase family 4 enzymes: substrate specificityQ44367075
Structures of Bacillus subtilis PdaA, a family 4 carbohydrate esterase, and a complex with N-acetyl-glucosamineQ44976541
Structure and activity of two metal ion-dependent acetylxylan esterases involved in plant cell wall degradation reveals a close similarity to peptidoglycan deacetylases.Q46907790
The pgdA gene encodes for a peptidoglycan N-acetylglucosamine deacetylase in Streptococcus pneumoniaeQ47865657
Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pKa Values.Q51550011
PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa PredictionsQ57129760
Structure and Mechanism of Chitin Deacetylase from the Fungal PathogenColletotrichum lindemuthianum†,‡Q58859667
The Protein Data BankQ24515306
Electrostatics of nanosystems: application to microtubules and the ribosomeQ24555224
I-TASSER: a unified platform for automated protein structure and function predictionQ24605680
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for GlycogenomicsQ24655377
Very fast prediction and rationalization of pKa values for protein-ligand complexesQ27144110
VMD: visual molecular dynamicsQ27860554
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum LikelihoodQ27861000
Bringing Web 2.0 to bioinformaticsQ28755488
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternativeQ29547242
ZINC: a free tool to discover chemistry for biologyQ29615857
HemicellulosesQ29617867
ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacementQ29618046
Very fast empirical prediction and rationalization of protein pKa valuesQ29619767
Characterization and cloning of chitin deacetylases from Rhizopus circinansQ33322065
Novel family of carbohydrate esterases, based on identification of the Hypocrea jecorina acetyl esterase geneQ33382029
BLAST-EXPLORER helps you building datasets for phylogenetic analysis.Q33523387
Graphical analysis of pH-dependent properties of proteins predicted using PROPKA.Q33804435
Fungal enzyme sets for plant polysaccharide degradationQ33970056
Structure and metal-dependent mechanism of peptidoglycan deacetylase, a streptococcal virulence factorQ34077718
Podospora anserina hemicellulases potentiate the Trichoderma reesei secretome for saccharification of lignocellulosic biomassQ34483918
Hemicellulose bioconversionQ35108313
Functional Cloning and Expression of the Schizophyllum commune Glucuronoyl Esterase Gene and Characterization of the Recombinant EnzymeQ36099866
The primary structure of a fungal chitin deacetylase reveals the function for two bacterial gene productsQ36504437
Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral anglesQ36546184
Introns and splicing elements of five diverse fungiQ37579819
The biochemistry and structural biology of plant cell wall deconstructionQ37734692
Microbial carbohydrate esterases deacetylating plant polysaccharidesQ38009609
Elastic Network Models: Theoretical and Empirical FoundationsQ38049275
A polysaccharide deacetylase homologue, PdaA, in Bacillus subtilis acts as an N-acetylmuramic acid deacetylase in vitro.Q40943381
Subsite structure of the endo-type chitin deacetylase from a deuteromycete, Colletotrichum lindemuthianum: an investigation using steady-state kinetic analysis and MS.Q42157128
Extracellular carbohydrate esterase from the basidiomycete Coprinopsis cinerea released ferulic and acetic acids from xylanQ42941237
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectBjerkandera adustaQ531200
bioinformaticsQ128570
P304page(s)533-546
P577publication date2015-01-24
P1433published inProteinsQ7251514
P1476titleIdentification of a novel carbohydrate esterase from Bjerkandera adusta: structural and function predictions through bioinformatics analysis and molecular modeling
P478volume83

Reverse relations

cites work (P2860)
Q89978584Studies of Cellulose and Starch Utilization and the Regulatory Mechanisms of Related Enzymes in Fungi
Q38934075The first description of a hormone-sensitive lipase from a basidiomycete: Structural insights and biochemical characterization revealed Bjerkandera adusta BaEstB as a novel esterase.

Search more.