Robust translation of the nucleoid protein Fis requires a remote upstream AU element and is enhanced by RNA secondary structure

scientific article published on 2 March 2012

Robust translation of the nucleoid protein Fis requires a remote upstream AU element and is enhanced by RNA secondary structure is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/JB.00053-12
P932PMC publication ID3347164
P698PubMed publication ID22389479

P2093author name stringReid C Johnson
Jimin Xu
Jeannette Chau
Maryam Nafissi
P2860cites workDeep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, HfqQ21145046
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The shape of the DNA minor groove directs binding by the DNA-bending protein FisQ27660559
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Escherichia coli host factor for site-specific DNA inversion: cloning and characterization of the fis gene.Q33580657
Growth phase-dependent variation in protein composition of the Escherichia coli nucleoidQ33638020
Identification and characterization of the fis operon in enteric bacteriaQ33741492
Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA.Q33947279
Non-canonical mechanism for translational control in bacteria: synthesis of ribosomal protein S1.Q34085665
A uridine-rich sequence required for translation of prokaryotic mRNAQ34539635
Growth phase-dependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fis P) in Escherichia coliQ34555728
Analysis of the upstream region of the Escherichia coli rnd gene encoding RNase D. Evidence for translational regulation of a putative tRNA processing enzymeQ34675404
DksA is required for growth phase-dependent regulation, growth rate-dependent control, and stringent control of fis expression in Escherichia coliQ34976754
Circuitry linking the Csr and stringent response global regulatory systemsQ35046553
The highly efficient translation initiation region from the Escherichia coli rpsA gene lacks a shine-dalgarno elementQ35075361
Enhancement of translation by the epsilon element is independent of the sequence of the 460 region of 16S rRNA.Q35085404
Sequence, regulation, and functions of fis in Salmonella typhimuriumQ35582859
Deletion analysis of the fis promoter region in Escherichia coli: antagonistic effects of integration host factor and Fis.Q35631367
The Fis protein: it's not just for DNA inversion anymoreQ35658496
Identification of an AU-rich translational enhancer within the Escherichia coli fepB leader RNA.Q35879335
rRNA transcription in Escherichia coliQ35965873
Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein FisQ36007346
Dramatic changes in Fis levels upon nutrient upshift in Escherichia coliQ36137894
Regulation of translation via mRNA structure in prokaryotes and eukaryotesQ36280619
Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAsQ37587211
Bacterial nucleoid-associated proteins, nucleoid structure and gene expressionQ37688895
Simple generation of site-directed point mutations in the Escherichia coli chromosome using Red(R)/ET(R) RecombinationQ38268186
Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1.Q38337095
An architectural role of the Escherichia coli chromatin protein FIS in organising DNA.Q39516058
Specific binding of Escherichia coli ribosomal protein S1 to boxA transcriptional antiterminator RNA.Q39565654
Structure and functions of ribosomal protein S1.Q40154487
The E.coli fis promoter is subject to stringent control and autoregulationQ41519126
Protein S1 counteracts the inhibitory effect of the extended Shine-Dalgarno sequence on translationQ41855320
Ribosome-messenger recognition in the absence of the Shine-Dalgarno interactions.Q43561466
The effect of Escherichia coli ribosomal protein S1 on the translational specificity of bacterial ribosomesQ44294191
The effect of ribosomal protein S1 from Escherichia coli and Micrococcus luteus on protein synthesis in vitro by E. coli and Bacillus subtilisQ44433801
The Escherichia coli Fis promoter is regulated by changes in the levels of its transcription initiation nucleotide CTP.Q45072784
A novel sequence element derived from bacteriophage T7 mRNA acts as an enhancer of translation of the lacZ gene in Escherichia coli.Q45909864
Identification of the tRNA-dihydrouridine synthase family.Q45971732
Analysis of the promoters and transcripts involved in IS10 anti-sense RNA controlQ46204083
Ribosomal protein S1 is required for translation of most, if not all, natural mRNAs in Escherichia coli in vivoQ47793190
Translation initiation in Escherichia coli: sequences within the ribosome-binding siteQ52231762
Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria.Q53959823
Translational initiation on structured messengers. Another role for the Shine-Dalgarno interaction.Q54642999
High-affinity RNA ligands to Escherichia coli ribosomes and ribosomal protein S1: comparison of natural and unnatural binding sitesQ71681331
Molecular cloning and sequence analysis of trp-lac fusion deletionsQ72723304
CRP modulates fis transcription by alternate formation of activating and repressing nucleoprotein complexesQ73694471
P433issue10
P304page(s)2458-2469
P577publication date2012-03-02
P1433published inJournal of BacteriologyQ478419
P1476titleRobust translation of the nucleoid protein Fis requires a remote upstream AU element and is enhanced by RNA secondary structure
P478volume194

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cites work (P2860)
Q47612981An A/U-Rich Enhancer Region Is Required for High-Level Protein Secretion through the HlyA Type I Secretion System.
Q90629473Autogenous regulation in vivo of the rpmE gene encoding ribosomal protein L31 (bL31), a key component of the protein-protein intersubunit bridge B1b
Q38388943Chromosomal position shift of a regulatory gene alters the bacterial phenotype.
Q36124083Differential Regulation of the Surface-Exposed and Secreted SslE Lipoprotein in Extraintestinal Pathogenic Escherichia coli
Q36149628Fis Is Essential for Yersinia pseudotuberculosis Virulence and Protects against Reactive Oxygen Species Produced by Phagocytic Cells during Infection
Q37653218Operon mRNAs are organized into ORF-centric structures that predict translation efficiency.
Q35534963Regulation of the rplY gene encoding 5S rRNA binding protein L25 in Escherichia coli and related bacteria
Q45162588Suppressors of dGTP Starvation in Escherichia coli
Q90639322Synonymous Mutations in rpsT Lead to Ribosomal Assembly Defects That Can Be Compensated by Mutations in fis and rpoA
Q39625992The metabolic potential of Escherichia coli BL21 in defined and rich medium
Q64915092Transcriptional Responses to ppGpp and DksA.
Q35221516Upstream binding of idling RNA polymerase modulates transcription initiation from a nearby promoter

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