Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons

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Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.NEURON.2011.02.028
P932PMC publication ID3065018
P698PubMed publication ID21382548
P5875ResearchGate publication ID50303711

P2093author name stringJunhyong Kim
Jai-Yoon Sul
James Eberwine
Thomas J Bell
Kevin Y Miyashiro
Peter T Buckley
Miler T Lee
Stephen A Fisher
P2860cites workUltrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
The origin and behavior of mutable loci in maizeQ24519263
Dendritic localization of rat vasopressin mRNA: ultrastructural analysis and mapping of targeting elementsQ48053065
Identification of a cis-acting dendritic targeting element in MAP2 mRNAs.Q48093967
Molecular characterization of the dendritic growth cone: regulated mRNA transport and local protein synthesis.Q48847696
Identification of a cis-acting element required for dendritic targeting of activity-regulated cytoskeleton-associated protein mRNA.Q50744771
Characterization of an RNA granule from developing brain.Q54626978
Altered synaptic plasticity in a mouse model of fragile X mental retardationQ24530695
RNA splicing capability of live neuronal dendritesQ24537204
Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genesQ24537363
Fragile X mental retardation protein is translated near synapses in response to neurotransmitter activationQ24657890
Processing of intronic microRNAsQ24677011
Basic local alignment search toolQ25938991
Vienna RNA secondary structure serverQ28131816
gurken and the I factor retrotransposon RNAs share common localization signals and machineryQ28259364
Localization of a beta-actin messenger ribonucleoprotein complex with zipcode-binding protein modulates the density of dendritic filopodia and filopodial synapsesQ28568714
Mobile elements: drivers of genome evolutionQ29547669
Kinesin transports RNA: isolation and characterization of an RNA-transporting granuleQ29618417
A model for neural development and treatment of Rett syndrome using human induced pluripotent stem cellsQ29619964
An intron with a constitutive transport element is retained in a Tap messenger RNA.Q30441579
Can ID repetitive elements serve as cis-acting dendritic targeting elements? An in vivo studyQ33300362
Cytoplasmic BK(Ca) channel intron-containing mRNAs contribute to the intrinsic excitability of hippocampal neuronsQ33318188
Identification of sites for exponential translation in living dendritesQ33949056
Primary structure, neural-specific expression, and dendritic location of human BC200 RNA.Q34306210
Intron retention facilitates splice variant diversity in calcium-activated big potassium channel populationsQ34396917
Escaping the nuclear confines: signal-dependent pre-mRNA splicing in anucleate plateletsQ34442383
L1 retrotransposition in neurons is modulated by MeCP2.Q34686579
Analysis of subcellularly localized mRNAs using in situ hybridization, mRNA amplification, and expression profilingQ35014690
Rodent BC1 RNA gene as a master gene for ID element amplificationQ35185755
Spatial codes in dendritic BC1 RNA.Q35659963
RNA transport in dendrites: a cis-acting targeting element is contained within neuronal BC1 RNAQ35747237
On the nature and differential distribution of mRNAs in hippocampal neurites: implications for neuronal functioningQ35879302
Brain-specific genes have identifier sequences in their intronsQ36253340
The 3'-untranslated region of CaMKII alpha is a cis-acting signal for the localization and translation of mRNA in dendritesQ36690536
Sporadic amplification of ID elements in rodents.Q36792809
Dendritic mRNA: transport, translation and functionQ36937891
Evaluation of next generation sequencing platforms for population targeted sequencing studiesQ37213808
Subcellular neuropharmacology: the importance of intracellular targetingQ37414698
To localize or not to localize: mRNA fate is in 3'UTR endsQ37588945
Splicing of oskar RNA in the nucleus is coupled to its cytoplasmic localizationQ40513675
Structural RNA has lower folding energy than random RNA of the same dinucleotide frequencyQ42224344
Egalitarian is a selective RNA-binding protein linking mRNA localization signals to the dynein motorQ43102909
Dynamic visualization of local protein synthesis in hippocampal neuronsQ43631820
P433issue5
P407language of work or nameEnglishQ1860
P921main subjectretrotransposonQ413988
P304page(s)877-884
P577publication date2011-03-01
P1433published inNeuronQ3338676
P1476titleCytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons
P478volume69

Reverse relations

cites work (P2860)
Q36162571Altered mRNA Splicing in SMN-Depleted Motor Neuron-Like Cells
Q51264509Alternative RNA Processing of Topoisomerase IIα in Etoposide-Resistant Human Leukemia K562 Cells: Intron Retention Results in a Novel C-Terminal Truncated 90-kDa Isoform.
Q37649232Alternative pre-mRNA splicing in neurons: growing up and extending its reach
Q30275782An NXF1 mRNA with a retained intron is expressed in hippocampal and neocortical neurons and is translated into a protein that functions as an Nxf1 cofactor
Q38002309Axonal mRNA localization and local protein synthesis in nervous system assembly, maintenance and repair
Q37323619Cell-intrinsic drivers of dendrite morphogenesis
Q61443850Comprehensive catalog of dendritically localized mRNA isoforms from sub-cellular sequencing of single mouse neurons
Q37943793Control of cytoplasmic mRNA localization
Q36020880Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention
Q35665484Cytoplasmic intron retention, function, splicing, and the sentinel RNA hypothesis
Q35780762Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation
Q37511898Dendritic glutamate receptor mRNAs show contingent local hotspot-dependent translational dynamics
Q36703465Distal Alternative Last Exons Localize mRNAs to Neural Projections
Q35878063Docosahexaenoic (DHA) modulates phospholipid-hydroperoxide glutathione peroxidase (Gpx4) gene expression to ensure self-protection from oxidative damage in hippocampal cells
Q37950158Drug targets: single-cell transcriptomics hastens unbiased discovery
Q83226916Free circular introns with an unusual branchpoint in neuronal projections
Q27318614Growth cone MKK7 mRNA targeting regulates MAP1b-dependent microtubule bundling to control neurite elongation
Q37705051IRFinder: assessing the impact of intron retention on mammalian gene expression.
Q89217980Identification and characterization of two novel alternatively spliced E2F1 transcripts in the rat CNS
Q39030450Identification of a circadian output circuit for rest:activity rhythms in Drosophila
Q92348657Increased intron retention is a post-transcriptional signature associated with progressive aging and Alzheimer's disease
Q33663144Interactions of noncanonical motifs with hnRNP A2 promote activity-dependent RNA transport in neurons.
Q55356425Intron retention and nuclear loss of SFPQ are molecular hallmarks of ALS.
Q46260864Intron retention enhances gene regulatory complexity in vertebrates
Q38650057Intron retention in mRNA: No longer nonsense: Known and putative roles of intron retention in normal and disease biology
Q52672265Intron retention in viruses and cellular genes: Detention, border controls and passports.
Q35380312Mammalian introns: when the junk generates molecular diversity
Q37876692Microbes' roadmap to neurons
Q37136338Nanoscale imaging of RNA with expansion microscopy
Q34363855NoFold: RNA structure clustering without folding or alignment
Q36381437Non-coding functions of alternative pre-mRNA splicing in development
Q27498824Origin and evolution of spliceosomal introns
Q33653714Origin of spliceosomal introns and alternative splicing
Q58698172Post-transcriptional Processing of mRNA in Neurons: The Vestiges of the RNA World Drive Transcriptome Diversity
Q48465245Preferential binding of a stable G3BP ribonucleoprotein complex to intron-retaining transcripts in mouse brain and modulation of their expression in the cerebellum
Q26767347Proteostasis and RNA Binding Proteins in Synaptic Plasticity and in the Pathogenesis of Neuropsychiatric Disorders
Q24623049Quantitative biology of single neurons
Q36580790RNA binding proteins accumulate at the postsynaptic density with synaptic activity
Q47342047Regulated Intron Removal Integrates Motivational State and Experience
Q38238679Regulation of gene expression through production of unstable mRNA isoforms.
Q50878493Regulatory roles of introns in fungicide sensitivity of Fusarium graminearum.
Q26995087Remote control of gene function by local translation
Q26799764SINEUPs: A new class of natural and synthetic antisense long non-coding RNAs that activate translation
Q37503693Serotonergic neuron regulation informed by in vivo single-cell transcriptomics
Q30277781Single neuron transcriptome analysis can reveal more than cell type classification: Does it matter if every neuron is unique?
Q48531784Single-cell analysis: The deepest differences
Q47551003Single-cell nanobiopsy reveals compartmentalization of mRNA in neuronal cells.
Q42958270Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons
Q38161293Synaptic control of local translation: the plot thickens with new characters
Q34079393The RNA-centred view of the synapse: non-coding RNAs and synaptic plasticity
Q39215683The alternative life of RNA-sequencing meets single molecule approaches
Q34549628The complex transcriptional landscape of the anucleate human platelet
Q28656085The dynamic proliferation of CanSINEs mirrors the complex evolution of Feliforms
Q34039873The promise of single-cell sequencing
Q35794872The search for endogenous siRNAs in the mammalian brain
Q88220517The successes and future prospects of the linear antisense RNA amplification methodology
Q59329412Transcriptome Profiling of Layer 5 Intratelencephalic Projection Neurons From the Mature Mouse Motor Cortex
Q33741801Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene
Q36488134Translational control at the synapse: role of RNA regulators
Q37870323Translational regulation in growth cones
Q38284529Unmasking the messenger
Q89579245iREAD: a tool for intron retention detection from RNA-seq data
Q38024474mRNA translation: regulating an out of soma experience

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