Docking analysis of transient complexes: interaction of ferredoxin-NADP+ reductase with ferredoxin and flavodoxin

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Docking analysis of transient complexes: interaction of ferredoxin-NADP+ reductase with ferredoxin and flavodoxin is …
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scholarly articleQ13442814

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P356DOI10.1002/PROT.21979
P932PMC publication ID4162409
P698PubMed publication ID18260112

P50authorJuan Fernández-RecioQ40704521
Ruben AbagyanQ44682954
P2093author name stringMilagros Medina
Carlos Gómez-Moreno
P2860cites workThree-dimensional structure of NADPH-cytochrome P450 reductase: prototype for FMN- and FAD-containing enzymesQ24654975
A productive NADP+ binding mode of ferredoxin-NADP + reductase revealed by protein engineering and crystallographic studiesQ27619492
Refined X-ray structures of the oxidized, at 1.3 A, and reduced, at 1.17 A, [2Fe-2S] ferredoxin from the cyanobacterium Anabaena PCC7119 show redox-linked conformational changesQ27620923
Four crystal structures of the 60 kDa flavoprotein monomer of the sulfite reductase indicate a disordered flavodoxin-like moduleQ27624980
Adrenodoxin reductase-adrenodoxin complex structure suggests electron transfer path in steroid biosynthesisQ27627708
Structure of the electron transfer complex between ferredoxin and ferredoxin-NADP(+) reductaseQ27629524
Role of a cluster of hydrophobic residues near the FAD cofactor in Anabaena PCC 7119 ferredoxin-NADP+ reductase for optimal complex formation and electron transfer to ferredoxinQ27631672
Probing the role of glutamic acid 139 of Anabaena ferredoxin-NADP+ reductase in the interaction with substratesQ27639835
Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2Fe-2S]Q27641437
Structure of the oxidized long-chain flavodoxin from Anabaena 7120 at 2 A resolutionQ27642035
Crystal structure of the electron transfer complex rubredoxin rubredoxin reductase of Pseudomonas aeruginosaQ27646770
Tuning of the FMN binding and oxido-reduction properties by neighboring side chains in Anabaena flavodoxinQ27648666
Crystallization and structure determination to 2.5-A resolution of the oxidized [2Fe-2S] ferredoxin isolated from Anabaena 7120Q27652971
X-ray structure of the ferredoxin:NADP+ reductase from the cyanobacterium Anabaena PCC 7119 at 1.8 A resolution, and crystallographic studies of NADP+ binding at 2.25 A resolutionQ27733738
Structure-function relationships in Anabaena ferredoxin: correlations between X-ray crystal structures, reduction potentials, and rate constants of electron transfer to ferredoxin:NADP+ reductase for site-specific ferredoxin mutantsQ27742765
Role of Arg100 and Arg264 from Anabaena PCC 7119 ferredoxin-NADP+ reductase for optimal NADP+ binding and electron transferQ27766746
Structure of the Escherichia coli fumarate reductase respiratory complexQ28137751
Assessment of CAPRI predictions in rounds 3-5 shows progress in docking proceduresQ28258469
Protein interactions in the human methionine synthase-methionine synthase reductase complex and implications for the mechanism of enzyme reactivationQ28300412
Atomic structure of ferredoxin-NADP+ reductase: prototype for a structurally novel flavoenzyme familyQ30195728
Prediction of protein-protein interactions by docking methods.Q30329611
Flavin photochemistry in the analysis of electron transfer reactions: role of charged and hydrophobic residues at the carboxyl terminus of ferredoxin-NADP(+) reductase in the interaction with its substratesQ31055470
Role of the C-terminal tyrosine of ferredoxin-nicotinamide adenine dinucleotide phosphate reductase in the electron transfer processes with its protein partners ferredoxin and flavodoxinQ31061888
Role of hydrophobic interactions in the flavodoxin mediated electron transfer from photosystem I to ferredoxin-NADP+ reductase in Anabaena PCC 7119.Q31131960
Involvement of glutamic acid 301 in the catalytic mechanism of ferredoxin-NADP+ reductase from Anabaena PCC 7119.Q32107354
Open questions in ferredoxin‐NADP+ reductase catalytic mechanismQ34192164
Visualization of transient encounter complexes in protein-protein association.Q34575140
Structure-function relationships in Anabaena ferredoxin/ferredoxin:NADP(+) reductase electron transfer: insights from site-directed mutagenesis, transient absorption spectroscopy and X-ray crystallographyQ34659488
Soft protein-protein docking in internal coordinatesQ36639007
Further characterization by site-directed mutagenesis of the protein-protein interface in the ferredoxin/ferredoxin:NADP+ reductase system from Anabaena: requirement of a negative charge at position 94 in ferredoxin for rapid electron transferQ36734854
Amino acid residues in Anabaena ferredoxin crucial to interaction with ferredoxin-NADP+ reductase: site-directed mutagenesis and laser flash photolysisQ36768979
Definition of the interaction domain for cytochrome c on cytochrome c oxidase. III. Prediction of the docked complex by a complete, systematic searchQ41710393
A redox-dependent interaction between two electron-transfer partners involved in photosynthesisQ42111452
Anabaena sp. PCC 7119 flavodoxin as electron carrier from photosystem I to ferredoxin-NADP+ reductase. Role of Trp(57) and Tyr(94).Q43957778
Structural basis for isozyme-specific regulation of electron transfer in nitric-oxide synthase.Q44945441
Anabaena flavodoxin as an electron carrier from photosystem I to ferredoxin-NADP+ reductase. Role of flavodoxin residues in protein-protein interaction and electron transfer.Q45209006
Improving CAPRI predictions: optimized desolvation for rigid-body dockingQ46568966
ICM-DISCO docking by global energy optimization with fully flexible side-chainsQ46664729
Flavodoxin-mediated electron transfer from photosystem I to ferredoxin-NADP+ reductase in Anabaena: role of flavodoxin hydrophobic residues in protein-protein interactionsQ46821908
An electrochemical, kinetic, and spectroscopic characterization of [2Fe-2S] vegetative and heterocyst ferredoxins from Anabaena 7120 with mutations in the cluster binding loopQ47800362
Efficient restraints for protein-protein docking by comparison of observed amino acid substitution patterns with those predicted from local environmentQ48548372
Identification of protein-protein interaction sites from docking energy landscapes.Q52005983
Involvement of lysine-88 of spinach ferredoxin-NADP+ reductase in the interaction with ferredoxin.Q54633642
Cell biology: brief encounters bolster contacts.Q55042605
Structural analysis of interactions for complex formation between Ferredoxin-NADP+ reductase and its protein partnersQ60633209
Charge reversal mutations in a conserved acidic patch in Anabaena ferredoxin can attenuate or enhance electron transfer to ferredoxin:NADP+ reductase by altering protein/protein orientation within the intermediate complexQ71530860
Ferredoxin-NADP(+) reductase uses the same site for the interaction with ferredoxin and flavodoxinQ73154558
Highly nonproductive complexes with Anabaena ferredoxin at low ionic strength are induced by nonconservative amino acid substitutions at Glu139 in Anabaena ferredoxin:NADP+ reductaseQ73185525
Transient protein interactions studied by NMR spectroscopy: the case of cytochrome C and adrenodoxinQ73499928
Lys75 of Anabaena ferredoxin-NADP+ reductase is a critical residue for binding ferredoxin and flavodoxin during electron transferQ77349788
Role of neighboring FMN side chains in the modulation of flavin reduction potentials and in the energetics of the FMN:apoprotein interaction in Anabaena flavodoxinQ81070268
Interaction of Ferredoxin-NADP(+) Reductase with its Substrates: Optimal Interaction for Efficient Electron TransferQ81358264
P433issue3
P407language of work or nameEnglishQ1860
P304page(s)848-862
P577publication date2008-08-01
P1433published inProteinsQ7251514
P1476titleDocking analysis of transient complexes: interaction of ferredoxin-NADP+ reductase with ferredoxin and flavodoxin
P478volume72

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cites work (P2860)
Q48048896A physical picture for mechanical dissociation of biological complexes: from forces to free energies.
Q42151421Binding thermodynamics of ferredoxin:NADP+ reductase: two different protein substrates and one energetics
Q41642027Combined computational and experimental analysis of a complex of ribonuclease III and the regulatory macrodomain protein, YmdB
Q39210413Interaction and electron transfer between ferredoxin-NADP(+) oxidoreductase and its partners: structural, functional, and physiological implications.
Q50948523Mechanostability of the Single-Electron-Transfer Complexes of Anabaena Ferredoxin-NADP(+) Reductase.
Q35730258Pseudomonas aeruginosa IscR-Regulated Ferredoxin NADP(+) Reductase Gene (fprB) Functions in Iron-Sulfur Cluster Biogenesis and Multiple Stress Response.
Q34094541Surface charges and regulation of FMN to heme electron transfer in nitric-oxide synthase
Q84020930The transient catalytically competent coenzyme allocation into the active site of Anabaena ferredoxin NADP+ -reductase
Q45096401Why is F19Ap53 unable to bind MDM2? Simulations suggest crack propagation modulates binding.

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