A local, interactive network of 3' RNA elements supports translation and replication of Turnip crinkle virus

scientific article published on 15 February 2012

A local, interactive network of 3' RNA elements supports translation and replication of Turnip crinkle virus is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/JVI.07019-11
P932PMC publication ID3318645
P698PubMed publication ID22345459

P50authorAnne SimonQ4768799
P2093author name stringXuefeng Yuan
Kerong Shi
P2860cites workMfold web server for nucleic acid folding and hybridization predictionQ24498105
Geometric nomenclature and classification of RNA base pairsQ24539990
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Translation mechanisms involving long-distance base pairing interactions between the 5' and 3' non-translated regions and internal ribosomal entry are conserved for both genomic RNAs of Blackcurrant reversion nepovirusQ81538433
Callus cultures of ArabidopsisQ81928392
A cis-replication element functions in both orientations to enhance replication of Turnip crinkle virusQ24612511
The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunitsQ24644485
Long-Distance RNA-RNA Interactions in Plant Virus Gene Expression and ReplicationQ27480301
Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA VirusesQ27487338
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Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3' UTR of turnip crinkle virusQ27658992
Stitching together RNA tertiary architecturesQ33788941
The terminal loop of a 3' proximal hairpin plays a critical role in replication and the structure of the 3' region of Turnip crinkle virusQ33936195
The non-Watson-Crick base pairs and their associated isostericity matricesQ33960863
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Relationship between internucleotide linkage geometry and the stability of RNA.Q34362161
Conformational changes involved in initiation of minus-strand synthesis of a virus-associated RNA.Q34366788
Tertiary structural and functional analyses of a viroid RNA motif by isostericity matrix and mutagenesis reveal its essential role in replicationQ35024188
Diverse roles of host RNA binding proteins in RNA virus replicationQ35592223
Long-distance RNA-RNA interactions between terminal elements and the same subset of internal elements on the potato virus X genome mediate minus- and plus-strand RNA synthesisQ35608747
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Parallels among positive-strand RNA viruses, reverse-transcribing viruses and double-stranded RNA virusesQ36438773
Structural domains within the 3' untranslated region of Turnip crinkle virus.Q36845765
Frequency and isostericity of RNA base pairsQ37169773
The 3' end of Turnip crinkle virus contains a highly interactive structure including a translational enhancer that is disrupted by binding to the RNA-dependent RNA polymeraseQ37344495
Subgenomic mRNA transcription in TombusviridaeQ37855454
Dynamic RNA structures in the dengue virus genomeQ37877088
Cap-independent translational enhancement of turnip crinkle virus genomic and subgenomic RNAsQ39588122
Encapsidation of turnip crinkle virus is defined by a specific packaging signal and RNA size.Q39878208
A complex network of RNA-RNA interactions controls subgenomic mRNA transcription in a tombusvirusQ39949298
A balance between circular and linear forms of the dengue virus genome is crucial for viral replicationQ40345189
A novel in vitro replication system for Dengue virus. Initiation of RNA synthesis at the 3'-end of exogenous viral RNA templates requires 5'- and 3'-terminal complementary sequence motifs of the viral RNA.Q40630325
RNA seeing double: close-packing of helices in RNA tertiary structureQ41560728
Analysis of a 3'-translation enhancer in a tombusvirus: a dynamic model for RNA-RNA interactions of mRNA terminiQ41627182
Ribosome binding to a 5' translational enhancer is altered in the presence of the 3' untranslated region in cap-independent translation of turnip crinkle virus.Q41846742
Long-distance kissing loop interactions between a 3' proximal Y-shaped structure and apical loops of 5' hairpins enhance translation of Saguaro cactus virusQ42138555
The 3' end of the foot-and-mouth disease virus genome establishes two distinct long-range RNA-RNA interactions with the 5' end regionQ45412371
Satellite RNA-mediated resistance to turnip crinkle virus in Arabidopsis involves a reduction in virus movementQ45758999
RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complexQ46588132
Requirement of a 3'-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymeraseQ71514715
P433issue8
P407language of work or nameEnglishQ1860
P304page(s)4065-4081
P577publication date2012-02-15
P1433published inJournal of VirologyQ1251128
P1476titleA local, interactive network of 3' RNA elements supports translation and replication of Turnip crinkle virus
P478volume86

Reverse relations

cites work (P2860)
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Q33829947Structural alteration of a BYDV-like translation element (BTE) that attenuates p35 expression in three mild Tobacco bushy top virus isolates
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