Comparison of the folding processes of distantly related proteins. Importance of hydrophobic content in folding.

scientific article published on July 2003

Comparison of the folding processes of distantly related proteins. Importance of hydrophobic content in folding. is …
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scholarly articleQ13442814

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P356DOI10.1016/S0022-2836(03)00627-2
P698PubMed publication ID12842473

P50authorGiampietro RamponiQ114439219
Kevin W PlaxcoQ40061619
Massimo StefaniQ56635756
Giulia CalloniQ56990035
Niccolo TaddeiQ57476604
P2093author name stringFabrizio Chiti
P2860cites workDevelopment of Enzymatic Activity during Protein FoldingQ57957851
Acceleration of the folding of acylphosphatase by stabilization of local secondary structureQ58291230
Folding studies of immunoglobulin-like β-sandwich proteins suggest that they share a common folding pathwayQ60162505
Folding of chymotrypsin inhibitor 2. 2. Influence of proline isomerization on the folding kinetics and thermodynamic characterization of the transition state of foldingQ68030484
Hydrophilicity of polar amino acid side-chains is markedly reduced by flanking peptide bondsQ68453330
The sequence-specific assignment of the 1H-NMR spectrum of an enzyme, horse-muscle acylphosphataseQ69350462
Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residuesQ70907210
Folding and unfolding kinetics of the proline-to-alanine mutants of bovine pancreatic ribonuclease AQ71087379
Partially folded states of equine lysozyme. Structural characterization and significance for protein foldingQ72551818
Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2Q73174178
High-energy channeling in protein foldingQ73456086
Multiple roles of prolyl residues in structure and foldingQ74247254
Molecular Biology of Hydrogen Utilization in Aerobic ChemolithotrophsQ22255626
From snapshot to movie: phi analysis of protein folding transition states taken one step furtherQ24657640
Structural changes in the transition state of protein folding: alternative interpretations of curved chevron plotsQ27618392
Unspecific hydrophobic stabilization of folding transition statesQ27638872
Crystal structure and anion binding in the prokaryotic hydrogenase maturation factor HypF acylphosphatase-like domainQ27639566
Crystal structure of common type acylphosphatase from bovine testisQ27734684
Folding kinetics of the protein pectate lyase C reveal fast-forming intermediates and slow proline isomerizationQ28211923
Evidence for sequential barriers and obligatory intermediates in apparent two-state protein foldingQ28218085
Insights into acylphosphatase structure and catalytic mechanismQ28235991
Principles that govern the folding of protein chainsQ28236872
Solution conditions can promote formation of either amyloid protofilaments or mature fibrils from the HypF N-terminal domainQ28364514
Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseasesQ29616535
Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturantsQ29617228
Hydrophobic core packing in the SH3 domain folding transition stateQ30167681
Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9.Q30312660
Kinetics of interaction of partially folded proteins with a hydrophobic dye: evidence that molten globule character is maximal in early folding intermediatesQ30423134
Mechanisms of protein foldingQ31944289
Slow folding of muscle acylphosphatase in the absence of intermediates.Q31990320
Slow cooperative folding of a small globular protein HPr.Q32152487
Peptidyl-prolyl cis-trans isomerases, a superfamily of ubiquitous folding catalystsQ33608244
Enzymes that catalyse the restructuring of proteinsQ33840728
Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.Q33878446
Mapping the folding pathway of an immunoglobulin domain: structural detail from Phi value analysis and movement of the transition stateQ33948562
Topology, stability, sequence, and length: defining the determinants of two-state protein folding kineticsQ34031904
Study of the "molten globule" intermediate state in protein folding by a hydrophobic fluorescent probeQ34104675
Kinetic partitioning of protein folding and aggregation.Q34110167
Keeping it in the family: folding studies of related proteinsQ34141529
Protein design based on folding modelsQ34141538
Transient folding intermediates characterized by protein engineeringQ34351283
Contact order, transition state placement and the refolding rates of single domain proteins.Q34464266
Prolyl isomerasesQ34545614
Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transitionQ34968585
The topomer search model: A simple, quantitative theory of two-state protein folding kineticsQ35031306
Salt-induced detour through compact regions of the protein folding landscapeQ35708354
Transient aggregates in protein folding are easily mistaken for folding intermediatesQ36178839
Designing conditions for in vitro formation of amyloid protofilaments and fibrilsQ36445068
The rate of interconversion between the two unfolded forms of ribonuclease A does not depend on guanidinium chloride concentrationQ40289731
Consideration of the possibility that the slow step in protein denaturation reactions is due to cis-trans isomerism of proline residuesQ40346399
Mutational analysis of the propensity for amyloid formation by a globular proteinQ40410762
On-pathway versus off-pathway folding intermediatesQ41394280
Folding of beta-sandwich proteins: three-state transition of a fibronectin type III moduleQ41764385
Cis proline mutants of ribonuclease A. II. Elimination of the slow‐folding forms by mutationQ42009152
Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteinsQ43025218
Comparison of the folding processes of T. thermophilus and E. coli ribonucleases H.Q43029909
Folding of intracellular retinol and retinoic acid binding proteinsQ43565756
Protein conformational changes induced by 1,1'-bis(4-anilino-5-naphthalenesulfonic acid): preferential binding to the molten globule of DnaK.Q46583355
Residues participating in the protein folding nucleus do not exhibit preferential evolutionary conservation.Q52046281
Thermodynamics and kinetics of folding of common-type acylphosphatase: comparison to the highly homologous muscle isoenzyme.Q53129242
Protein Folding: A Perspective from Theory and Experiment.Q54308010
How do small single-domain proteins fold?Q55067789
Cytochrome c 553 , a small heme protein that lacks misligation in its unfolded state, folds with rapid two-state kinetics 1 1Edited by C. R. MatthewsQ57822008
Folding of circular permutants with decreased contact order: general trend balanced by protein stability 1 1Edited by A. R. FershtQ57823297
Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domainQ57957112
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectprotein foldingQ847556
AcylphosphataseQ24722433
hydrophobicityQ41854968
P304page(s)577-591
P577publication date2003-07-01
P1433published inJournal of Molecular BiologyQ925779
P1476titleComparison of the folding processes of distantly related proteins. Importance of hydrophobic content in folding
P478volume330

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cites work (P2860)
Q39545823A comparison of the biochemical modifications caused by toxic and non-toxic protein oligomers in cells
Q30352667A localized specific interaction alters the unfolding pathways of structural homologues.
Q79882447Analysis of the differences in the folding mechanisms of c-type lysozymes based on contact maps constructed with interresidue average distances
Q30342170Database-derived potentials dependent on protein size for in silico folding and design.
Q56993019Determination of protein folding kinetic types using sequence and predicted secondary structure and solvent accessibility
Q45195856Investigating the effects of mutations on protein aggregation in the cell.
Q100738796Investigating the trade-off between folding and function in a multidomain Y-family DNA polymerase
Q34246536Investigation of an anomalously accelerating substitution in the folding of a prototypical two-state protein.
Q42064223Natively folded HypF-N and its early amyloid aggregates interact with phospholipid monolayers and destabilize supported phospholipid bilayers
Q36899853Potential for modulation of the hydrophobic effect inside chaperonins
Q34830201Prediction of protein folding rates from the amino acid sequence-predicted secondary structure.
Q47736122Rules for connectivity of secondary structure elements in protein: Two-layer αβ sandwiches
Q37767065What lessons can be learned from studying the folding of homologous proteins?