| review article | Q7318358 |
| scholarly article | Q13442814 |
| P2093 | author name string | Plaxco KW | |
| Baker D | |||
| Ruczinski I | |||
| Simons KT | |||
| P433 | issue | 37 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | protein folding | Q847556 |
| P304 | page(s) | 11177-11183 | |
| P577 | publication date | 2000-09-01 | |
| P1433 | published in | Biochemistry | Q764876 |
| P1476 | title | Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics | |
| P478 | volume | 39 |
| Q44009129 | A kinetic trap is an intrinsic feature in the folding pathway of single-chain Fv fragments |
| Q28728370 | A simple model predicts experimental folding rates and a hub-like topology |
| Q42958281 | A unified mechanism for protein folding: predetermined pathways with optional errors |
| Q27639747 | An alanine-zipper structure determined by long range intermolecular interactions |
| Q54627051 | Analyses of the folding properties of ferredoxin-like fold proteins by means of a coarse-grained Gō model: relationship between the free energy profiles and folding cores. |
| Q79882447 | Analysis of the differences in the folding mechanisms of c-type lysozymes based on contact maps constructed with interresidue average distances |
| Q51050680 | Analyzing the effect of homogeneous frustration in protein folding. |
| Q51641193 | Application of the diffusion-collision model to the folding of three-helix bundle proteins. |
| Q30355826 | Assessing the effect of dynamics on the closed-loop protein-folding hypothesis |
| Q27336738 | BCL::Fold--de novo prediction of complex and large protein topologies by assembly of secondary structure elements |
| Q30418154 | Biological synthesis of circular polypeptides |
| Q28392590 | Characterization of Protein-Protein Interfaces through a Protein Contact Network Approach |
| Q41018728 | Characterization of protein folding by a Φ-value calculation with a statistical-mechanical model |
| Q34078456 | Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment |
| Q35977668 | Coarse-grained sequences for protein folding and design |
| Q95391509 | Comment on the Communication "The Key to Solving the Protein-Folding Problem Lies in an Accurate Description of the Denatured State" by van Gunsteren et al. We thank Eugene Shakhnovich (Harvard University) for pointing out the references on lattice |
| Q42168372 | Comparison of the folding processes of distantly related proteins. Importance of hydrophobic content in folding. |
| Q37249879 | Computing protein stabilities from their chain lengths |
| Q42860947 | Conformational dynamics is more important than helical propensity for the folding of the all α-helical protein Im7. |
| Q36639064 | Conserved and nonconserved features of the folding pathway of hisactophilin, a beta-trefoil protein |
| Q34764716 | Constrained proper sampling of conformations of transition state ensemble of protein folding. |
| Q30331234 | Contact order and ab initio protein structure prediction |
| Q30357288 | Contour length and refolding rate of a small protein controlled by engineered disulfide bonds. |
| Q38336906 | Cooperative and directional folding of the preQ1 riboswitch aptamer domain |
| Q47751780 | Cooperativity and contact order in protein folding |
| Q46100119 | Cooperativity, smooth energy landscapes and the origins of topology-dependent protein folding rates |
| Q35878643 | Cysteine-cysteine contact preference leads to target-focusing in protein folding |
| Q30686772 | Cytochrome c' folding triggered by electron transfer: fast and slow formation of four-helix bundles |
| Q40152267 | Determination of contact maps in proteins: A combination of structural and chemical approaches. |
| Q46814791 | Differentiation between two-state and multi-state folding proteins based on sequence |
| Q92060649 | Domain topology, stability, and translation speed determine mechanical force generation on the ribosome |
| Q30167733 | Early formation of a beta hairpin during folding of staphylococcal nuclease H124L as detected by pulsed hydrogen exchange |
| Q27639084 | Effects of remote mutation on the autolysis of HIV-1 PR: X-ray and NMR investigations |
| Q41885666 | Evidence for the principle of minimal frustration in the evolution of protein folding landscapes |
| Q28359790 | Examination of the folding of E. coli CspA through tryptophan substitutions |
| Q34074395 | Experimental evaluation of topological parameters determining protein-folding rates |
| Q44428737 | Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA. |
| Q30164515 | Folding kinetics of two-state proteins: effect of circularization, permutation, and crosslinks. |
| Q44070154 | Folding mechanism of indole-3-glycerol phosphate synthase from Sulfolobus solfataricus: a test of the conservation of folding mechanisms hypothesis in (beta(alpha))(8) barrels |
| Q36526594 | Folding mechanism of the (H3-H4)2 histone tetramer of the core nucleosome |
| Q36968465 | Folding of a universal ribozyme: the ribonuclease P RNA. |
| Q40222014 | Folding rate prediction using total contact distance |
| Q46016331 | Folding rates and low-entropy-loss routes of two-state proteins. |
| Q48944686 | Form of growing strings |
| Q35590129 | Highly polarized C-terminal transition state of the leucine-rich repeat domain of PP32 is governed by local stability |
| Q58029539 | How determinant is N-terminal to C-terminal coupling for protein folding? |
| Q34018900 | How the folding rate constant of simple, single-domain proteins depends on the number of native contacts |
| Q30362362 | How the folding rates of two- and multistate proteins depend on the amino acid properties. |
| Q41845755 | Identifying critical residues in protein folding: Insights from phi-value and P(fold) analysis |
| Q47422764 | Importance of sequence specificity for predicting protein folding pathways: Perturbed Gaussian chain model |
| Q34182229 | Insights into nucleic acid conformational dynamics from massively parallel stochastic simulations |
| Q47371880 | Integrated prediction of protein folding and unfolding rates from only size and structural class |
| Q78968479 | Interplay among tertiary contacts, secondary structure formation and side-chain packing in the protein folding mechanism: all-atom representation study of protein L |
| Q34246536 | Investigation of an anomalously accelerating substitution in the folding of a prototypical two-state protein. |
| Q41911953 | Kinetic folding mechanism of erythropoietin |
| Q73883517 | Kinetic nonoptimality and vibrational stability of proteins |
| Q43094810 | Kinetic traps in the folding/unfolding of procaspase-1 CARD domain. |
| Q36230626 | Lifetimes of intermediates in the beta -sheet to alpha -helix transition of beta -lactoglobulin by using a diffusional IR mixer |
| Q33936836 | Local and long-range stability in tandemly arrayed tetratricopeptide repeats |
| Q73187082 | Local secondary structure content predicts folding rates for simple, two-state proteins |
| Q33948562 | Mapping the folding pathway of an immunoglobulin domain: structural detail from Phi value analysis and movement of the transition state |
| Q31944289 | Mechanisms of protein folding |
| Q34439602 | Missense meanderings in sequence space: a biophysical view of protein evolution |
| Q33971729 | Modulation of frustration in folding by sequence permutation. |
| Q38215658 | Molecular dynamics of thermoenzymes at high temperature and pressure: a review |
| Q57805464 | Monitoring Backbone Hydrogen-Bond Formation in β-Barrel Membrane Protein Folding |
| Q51379828 | Monitoring Backbone Hydrogen-Bond Formation in β-Barrel Membrane Protein Folding. |
| Q30164176 | Monomer topology defines folding speed of heptamer. |
| Q31031700 | NMR chemical shift analysis of the conformational transition between the monomer and tetramer of melittin in an aqueous solution |
| Q77926241 | Native and non-native interactions along protein folding and unfolding pathways |
| Q30377006 | Network measures for protein folding state discrimination |
| Q62559367 | Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein |
| Q89018569 | Non-Steric Interactions Predict the Trend and Steric Interactions the Offset of Protein Stability in Cells |
| Q41295041 | Non‐native interactions play an effective role in protein folding dynamics |
| Q30313760 | On the polymer physics origins of protein folding thermodynamics |
| Q36398837 | On the role of structural class of a protein with two-state folding kinetics in determining correlations between its size, topology, and folding rate |
| Q53656683 | Perturbed folding kinetics of circularly permuted RNAs with altered topology. |
| Q27321094 | Polymer uncrossing and knotting in protein folding, and their role in minimal folding pathways |
| Q37193804 | Predicting protein folding cores by empirical potential functions |
| Q36740745 | Predicting protein folding rates from geometric contact and amino acid sequence |
| Q43097908 | Predicting repeat protein folding kinetics from an experimentally determined folding energy landscape |
| Q35893979 | Probing the Folding-Unfolding Transition of a Thermophilic Protein, MTH1880 |
| Q34476736 | ProtDCal: A program to compute general-purpose-numerical descriptors for sequences and 3D-structures of proteins |
| Q36153881 | Protective Effects of Acetylation on the Pathological Reactions of the Lens Crystallins with Homocysteine Thiolactone. |
| Q42208320 | Protein Folding Database (PFD 2.0): an online environment for the International Foldeomics Consortium. |
| Q34141538 | Protein design based on folding models |
| Q34608358 | Protein folding in a reverse micelle environment: the role of confinement and dehydration |
| Q40311410 | Protein folding in high-dimensional spaces: hypergutters and the role of nonnative interactions |
| Q38070971 | Protein folding under mechanical forces: a physiological view |
| Q30981967 | Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins |
| Q42559615 | Protein unfolding rates correlate as strongly as folding rates with native structure |
| Q73934665 | Real time NMR monitoring of local unfolding of HIV-1 protease tethered dimer driven by autolysis |
| Q34871830 | Recombinant expression of backbone-cyclized polypeptides |
| Q30371317 | Reduced alphabet for protein folding prediction. |
| Q46591406 | Relationship between protein folding kinetics and amino acid properties |
| Q36982772 | Repeat-protein folding: new insights into origins of cooperativity, stability, and topology |
| Q37104189 | Ruggedness in the folding landscape of protein L. |
| Q92642704 | Sequence and structural patterns detected in entangled proteins reveal the importance of co-translational folding |
| Q57367246 | Sequence control over thermo-triggered micellization and smart nanogels of copolymers based on PEGMA and aldehyde-functionalized monomer |
| Q30159730 | Similarity and difference in the unfolding of thermophilic and mesophilic cold shock proteins studied by molecular dynamics simulations |
| Q35575873 | Site-specific collapse dynamics guide the formation of the cytochrome c' four-helix bundle |
| Q47585262 | Site-specific time-resolved FRET reveals local variations in the unfolding mechanism in an apparently two-state protein unfolding transition |
| Q48605842 | Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: how adequate is native-centric topological modeling? |
| Q45788154 | Spatial ranges of driving forces are a key determinant of protein folding cooperativity and rate diversity. |
| Q27639890 | Structural features of cytochrome c' folding intermediates revealed by fluorescence energy-transfer kinetics |
| Q33900482 | Structural specificity conferred by a group I RNA peripheral element |
| Q34521984 | Surfactant copolymers prevent aggregation of heat denatured lysozyme |
| Q51374828 | Temperature dependence and counter effect of the correlations of folding rate with chain length and with native topology. |
| Q35963359 | Temperature-dependent folding pathways of Pin1 WW domain: an all-atom molecular dynamics simulation of a Gō model. |
| Q90189487 | The Molten Globule, and Two-State vs. Non-Two-State Folding of Globular Proteins |
| Q33763372 | The N-terminal to C-terminal motif in protein folding and function |
| Q27649554 | The Trp-cage: optimizing the stability of a globular miniprotein |
| Q30163987 | The effects of nonnative interactions on protein folding rates: theory and simulation |
| Q34078451 | The experimental folding landscape of monomeric lactose repressor, a large two-domain protein, involves two kinetic intermediates |
| Q37818728 | The folding of single domain proteins--have we reached a consensus? |
| Q43740261 | The folding pathway of alpha-lactalbumin elucidated by the technique of disulfide scrambling. Isolation of on-pathway and off-pathway intermediates |
| Q36024552 | The folding transition state of protein L is extensive with nonnative interactions (and not small and polarized). |
| Q39132517 | The leucine-rich repeat domain of Internalin B folds along a polarized N-terminal pathway |
| Q38270380 | The origins of asymmetry in the folding transition states of protein L and protein G. |
| Q41866163 | The principle of stationary action in biophysics: stability in protein folding |
| Q38270911 | The safety dance: biophysics of membrane protein folding and misfolding in a cellular context |
| Q35031306 | The topomer search model: A simple, quantitative theory of two-state protein folding kinetics |
| Q38067181 | To milliseconds and beyond: challenges in the simulation of protein folding |
| Q34984722 | Toward an accurate theoretical framework for describing ensembles for proteins under strongly denaturing conditions |
| Q47995118 | Transiently disordered tails accelerate folding of globular proteins. |
| Q44323301 | Two-dimensional fluorescence resonance energy transfer as a probe for protein folding: a theoretical study |
| Q37995732 | Understanding how small helical proteins fold: conformational dynamics of Im proteins relevant to their folding landscapes |
| Q47226964 | Unified understanding of folding and binding mechanisms of globular and intrinsically disordered proteins |
| Q37088491 | Unifying features in protein-folding mechanisms |
| Q51566622 | Unifying model for two-state and downhill protein folding. |
| Q34180201 | Universality classes in folding times of proteins |
| Q34398554 | Universality in the timescales of internal loop formation in unfolded proteins and single-stranded oligonucleotides |
| Q28732259 | Viral proteins acquired from a host converge to simplified domain architectures |
| Q28216976 | Weak cooperativity in the core causes a switch in folding mechanism between two proteins of the cks family |
| Q41899145 | What have we learned from the studies of two-state folders, and what are the unanswered questions about two-state protein folding? |
| Q34256511 | Why do protein folding rates correlate with metrics of native topology? |
| Q44019108 | pH-dependent stability and folding kinetics of a protein with an unusual alpha-beta topology: the C-terminal domain of the ribosomal protein L9. |
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