| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/nar/ZhengLO09 |
| P356 | DOI | 10.1093/NAR/GKP358 |
| P932 | PMC publication ID | 2703980 |
| P698 | PubMed publication ID | 19474339 |
| P5875 | ResearchGate publication ID | 26245696 |
| P2093 | author name string | Wilma K Olson | |
| Guohui Zheng | |||
| Xiang-Jun Lu | |||
| P2860 | cites work | The Protein Data Bank | Q24515306 |
| Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles | Q24563875 | ||
| Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid | Q1895685 | ||
| Anisotropic flexibility of DNA and the nucleosomal structure | Q24633278 | ||
| Solution structure of a telomeric DNA complex of human TRF1 | Q27636679 | ||
| Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution | Q27639217 | ||
| Flexible DNA bending in HU-DNA cocrystal structures | Q27641656 | ||
| 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures | Q27860547 | ||
| BII nucleotides in the B and C forms of natural-sequence polymeric DNA: A new model for the C form of DNA | Q28138984 | ||
| The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids | Q29619486 | ||
| A-form conformational motifs in ligand-bound DNA structures | Q33909143 | ||
| Induced fit and "lock and key" recognition of 5S RNA by zinc fingers of transcription factor IIIA. | Q33992821 | ||
| A standard reference frame for the description of nucleic acid base-pair geometry. | Q34095234 | ||
| WebMol--a Java-based PDB viewer. | Q36876091 | ||
| BPS: a database of RNA base-pair structures | Q38386671 | ||
| X-ray fibre diffraction study of an elevated temperature structure of poly(dA).poly(dT). | Q38554719 | ||
| The structure of poly(dA).poly(dT) as revealed by an X-ray fibre diffraction | Q38595069 | ||
| Conformations of A-DNA and B-DNA in agreement with fiber X-ray and infrared dichroism | Q40490732 | ||
| 3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures | Q41979786 | ||
| A new D-DNA form of poly(dA-dT).poly(dA-dT): an A-DNA type structure with reversed Hoogsteen pairing | Q43980798 | ||
| Structure and conformation of helical nucleic acids: analysis program (SCHNAaP). | Q48772053 | ||
| The Assessment of the Geometry of Dinucleotide Steps in Double-Helical DNA; a New Local Calculation Scheme | Q52331458 | ||
| The effect of mathematics and coordinate system on comparability and "dependencies" of nucleic acid structure parameters. | Q52379715 | ||
| Nucleic acid structure analysis. Mathematics for local Cartesian and helical structure parameters that are truly comparable between structures. | Q52379718 | ||
| DNA models for A, B, C and D conformations related to fiber X-ray, infrared and NMR measurements | Q68113271 | ||
| Conformations of C-DNA in agreement with fiber X-ray and infrared dichroism | Q70423448 | ||
| Helix-helix transitions in DNA: fibre X-ray study of the particular cases poly(dG-dC). poly(dG-dC) and poly(dA). 2poly(dT) | Q73132816 | ||
| Structure and conformation of helical nucleic acids: rebuilding program (SCHNArP) | Q73842803 | ||
| P433 | issue | Web Server issue | |
| P921 | main subject | web server | Q11288 |
| visualization | Q451553 | ||
| P304 | page(s) | W240-6 | |
| P577 | publication date | 2009-05-27 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures | |
| P478 | volume | 37 |
| Q30882252 | 3DNALandscapes: a database for exploring the conformational features of DNA. |
| Q43096431 | 5-Formylcytosine alters the structure of the DNA double helix |
| Q38786081 | 5-Formylcytosine does not change the global structure of DNA. |
| Q42182195 | 5-Methylation of cytosine in CG:CG base-pair steps: a physicochemical mechanism for the epigenetic control of DNA nanomechanics |
| Q57025353 | A Bacterial Chromosome Structuring Protein Binds Overtwisted DNA to Stimulate Type II Topoisomerases and Enable DNA Replication |
| Q39760937 | A DFT study of 2-aminopurine-containing dinucleotides: prediction of stacked conformations with B-DNA structure |
| Q33722710 | A bacterial negative transcription regulator binding on an inverted repeat in the promoter for epothilone biosynthesis. |
| Q34354855 | A historical account of Hoogsteen base-pairs in duplex DNA. |
| Q48331177 | A novel form of RNA double helix based on G·U and C·A+ wobble base pairing |
| Q27689082 | A regular thymine tetrad and a peculiar supramolecular assembly in the first crystal structure of an all-LNA G-quadruplex |
| Q64951048 | A unique exonuclease ExoG cleaves between RNA and DNA in mitochondrial DNA replication. |
| Q34427261 | Accurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids. |
| Q45783105 | All-atom knowledge-based potential for RNA structure prediction and assessment |
| Q27675607 | Analysis of the Costructure of the Simian Virus 40 T-Antigen Origin Binding Domain with Site I Reveals a Correlation between GAGGC Spacing and Spiral Assembly |
| Q41202787 | Analyzing and building nucleic acid structures with 3DNA. |
| Q35648649 | Binding of undamaged double stranded DNA to vaccinia virus uracil-DNA Glycosylase. |
| Q48042182 | Biologically important conformational features of DNA as interpreted by quantum mechanics and molecular mechanics computations of its simple fragments |
| Q35075570 | CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures |
| Q38911510 | Characterization of Biomolecular Helices and Their Complementarity Using Geometric Analysis. |
| Q89719750 | Clustered DNA Damage: Electronic Properties and Their Influence on Charge Transfer. 7,8-Dihydro-8-Oxo-2'-Deoxyguaosine Versus 5',8-Cyclo-2'-Deoxyadenosines: A Theoretical Approach |
| Q58729770 | Co(Chromomycin)₂ Complex Induces a Conformational Change of CCG Repeats from i-Motif to Base-Extruded DNA Duplex |
| Q56268816 | Coarse-grained models for studying protein diffusion along DNA |
| Q48221042 | Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography |
| Q57051122 | Comparative structure analysis of the ETSi domain of ERG3 and its complex with the E74 promoter DNA sequence |
| Q33776255 | Computing DNA duplex instability profiles efficiently with a two-state model: trends of promoters and binding sites |
| Q88613688 | Cooperative recognition of T:T mismatch by echinomycin causes structural distortions in DNA duplex |
| Q89583429 | Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation |
| Q27681282 | Crystal Structure of Interleukin-6 in Complex with a Modified Nucleic Acid Ligand |
| Q27683345 | Crystal Structure of Yeast DNA Polymerase ε Catalytic Domain |
| Q47101782 | Crystal structure and fluorescence properties of the iSpinach aptamer in complex with DFHBI. |
| Q58028932 | Crystal structure of TcpK in complex with oriT DNA of the antibiotic resistance plasmid pCW3 |
| Q87995417 | Crystal structure of d(CCGGGGTACCCCGG)2 at 1.4 Å resolution |
| Q47898333 | Crystal structure of the DNA sequence d(CGTGAATTCACG)2 with DAPI. |
| Q92563292 | Crystal structures of a natural DNA polymerase that functions as an XNA reverse transcriptase |
| Q47100391 | Crystal structures of ternary complexes of archaeal B-family DNA polymerases |
| Q44166529 | Crystallographic analyses illustrate significant plasticity and efficient recoding of meganuclease target specificity |
| Q26991720 | DNA Recognition by a Novel Bis-Intercalator, Potent Anticancer Drug XR5944 |
| Q36026710 | DNA Scrunching in the Packaging of Viral Genomes |
| Q34310423 | DNA curvature and flexibility in vitro and in vivo |
| Q27728013 | Delta chirality ruthenium 'light-switch' complexes can bind in the minor groove of DNA with five different binding modes |
| Q44349024 | Determination of Ion Atmosphere Effects on the Nucleic Acid Electrostatic Potential and Ligand Association Using AH+·C Wobble Formation in Double-Stranded DNA. |
| Q27674391 | Differential Furanose Selection in the Active Sites of Archaeal DNA Polymerases Probed by Fixed-Conformation Nucleotide Analogues |
| Q46265781 | Direct LC-MS/MS Detection of Guanine Oxidations in Exon 7 of the p53 Tumor Suppressor Gene |
| Q40366643 | Distinctive contributions of the ribosomal P-site elements m2G966, m5C967 and the C-terminal tail of the S9 protein in the fidelity of initiation of translation in Escherichia coli |
| Q27694673 | Double GC:GC mismatch in dsDNA enhances local dynamics retaining the DNA footprint: a high-resolution NMR study |
| Q34545259 | Easy DNA modeling and more with GraphiteLifeExplorer |
| Q30993331 | Effect of Different Z-Inducers on the Stabilization of Z Portion in BZ-DNA Sequence: Correlation Between Experimental and Simulation Data. |
| Q45831133 | Effect of confinement on DNA, solvent and counterion dynamics in a model biological nanopore. |
| Q44008631 | Effects of (5'S)-5',8-cyclo-2'-deoxyadenosine on the base excision repair of oxidatively generated clustered DNA damage. A biochemical and theoretical study. |
| Q41430291 | FRETmatrix: a general methodology for the simulation and analysis of FRET in nucleic acids |
| Q38294467 | Flexibility and conformation of the cocaine aptamer studied by PELDOR. |
| Q90013183 | Framework for Conducting and Analyzing Crystal Simulations of Nucleic Acids to Aid in Modern Force Field Evaluation |
| Q91813541 | Going beyond base-pairs: topology-based characterization of base-multiplets in RNA |
| Q37731572 | Gold(III) macrocycles: nucleotide-specific unconventional catalytic inhibitors of human topoisomerase I. |
| Q37660036 | Graph-based sampling for approximating global helical topologies of RNA. |
| Q28533852 | Guanine holes are prominent targets for mutation in cancer and inherited disease |
| Q47226636 | High free-energy barrier of 1D diffusion along DNA by architectural DNA-binding proteins |
| Q55560845 | High-resolution measurement of long-range distances in RNA: pulse EPR spectroscopy with TEMPO-labeled nucleotides† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c5sc04631a. |
| Q36754911 | Human DNA polymerase α in binary complex with a DNA:DNA template-primer |
| Q43242501 | Impact of geometry optimization on base-base stacking interaction energies in the canonical A- and B-forms of DNA. |
| Q27675789 | Indirect DNA Readout by an H-NS Related Protein: Structure of the DNA Complex of the C-Terminal Domain of Ler |
| Q41827254 | Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity |
| Q48028610 | Induced-Fit Recognition of CCG Trinucleotide Repeats by a Nickel-Chromomycin Complex Resulting in Large-Scale DNA Deformation |
| Q91694948 | Induction of a Four-Way Junction Structure in the DNA Palindromic Hexanucleotide 5'-d(CGTACG)-3' by a Mononuclear Platinum Complex |
| Q90212546 | Interbase FRET in RNA: from A to Z |
| Q41478215 | LNA effects on DNA binding and conformation: from single strand to duplex and triplex structures |
| Q41762425 | Long-range effects of histone point mutations on DNA remodeling revealed from computational analyses of SIN-mutant nucleosome structures. |
| Q90189504 | Measurement of Angstrom to Nanometer Molecular Distances with 19 F Nuclear Spins by EPR/ENDOR Spectroscopy |
| Q92342106 | Mechanism of DNA translocation underlying chromatin remodelling by Snf2 |
| Q42228622 | Mechanistic insight into the structure and dynamics of entangled and hydrated λ-phage DNA. |
| Q30694170 | Modeling the structure of RNA molecules with small-angle X-ray scattering data |
| Q37021559 | Molecular insights into DNA binding and anchoring by the Bacillus subtilis sporulation kinetochore-like RacA protein |
| Q47243462 | Multimodal Measurements of Single-Molecule Dynamics Using FluoRBT. |
| Q59336625 | N-methyldeoxyadenosine directs nucleosome positioning in Tetrahymena DNA |
| Q27660288 | NMR Solution Structure and DNA-binding Model of the DNA-binding Domain of Competence Protein A |
| Q46621168 | NMR characterisation of a highly conserved secondary structural RNA motif of Halobacterium halobium 23S rRNA. |
| Q42242007 | NMR elucidation of the role of Mg2+ in the structure and stability of the conserved RNA motifs of the EMCV IRES element |
| Q99594461 | Near-atomic resolution structures of interdigitated nucleosome fibres |
| Q37851243 | Nuclear magnetic resonance analysis of protein-DNA interactions |
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| Q48208333 | Parity-dependent hairpin configurations of repetitive DNA sequence promote slippage associated with DNA expansion |
| Q36244682 | Photochemistry and Photobiology of the Spore Photoproduct: A 50-Year Journey |
| Q38784917 | Probing the structural dynamics of the CRISPR-Cas9 RNA-guided DNA-cleavage system by coarse-grained modeling |
| Q33575051 | RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures |
| Q33860768 | RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs |
| Q35089055 | RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information |
| Q34207016 | Recognition of double-stranded DNA using energetically activated duplexes with interstrand zippers of 1-, 2- or 4-pyrenyl-functionalized O2'-alkylated RNA monomers |
| Q48042574 | Role of Macromolecular Crowding on the Intracellular Diffusion of DNA Binding Proteins |
| Q55690504 | Role of Pseudoisocytidine Tautomerization in Triplex-Forming Oligonucleotides: In Silico and in Vitro Studies. |
| Q42999176 | Search by proteins for their DNA target site: 1. The effect of DNA conformation on protein sliding |
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| Q43195683 | Searching target sites on DNA by proteins: Role of DNA dynamics under confinement |
| Q46770650 | Selective base excision repair of DNA damage by the non-base-flipping DNA glycosylase AlkC. |
| Q24309698 | Sequence-specific transcription factor NF-Y displays histone-like DNA binding and H2B-like ubiquitination |
| Q39325321 | Simulation of Electronic Circular Dichroism of Nucleic Acids: From the Structure to the Spectrum |
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| Q27670649 | Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation |
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| Q36775620 | Structural Dynamics of Human Argonaute2 and Its Interaction with siRNAs Designed to Target Mutant tdp43. |
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