Unusual thermal stability of RNA/[RP-PS]-DNA/RNA triplexes containing a homopurine DNA strand

scientific article

Unusual thermal stability of RNA/[RP-PS]-DNA/RNA triplexes containing a homopurine DNA strand is …
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scholarly articleQ13442814

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P356DOI10.1529/BIOPHYSJ.106.099283
P932PMC publication ID1864848
P698PubMed publication ID17218459
P5875ResearchGate publication ID6584020

P50authorWojciech StecQ9376883
Piotr GugaQ87358218
Anna MaciaszekQ91431578
Malgorzata BoczkowskaQ91878833
P2093author name stringMagdalena Janicka
Slawomir Kuberski
P2860cites workMODIFIED OLIGONUCLEOTIDES: Synthesis and Strategy for UsersQ22065420
Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraintsQ27730056
Structure of a stereoregular phosphorothioate DNA/RNA duplexQ27749077
Effect of P-chirality of internucleotide bonds on B-Z conversion of stereodefined self-complementary phosphorothioate oligonucleotides of the [PS]-d(CG)4 and [PS]-d(GC)4 seriesQ30656463
A library of IR bands of nucleic acids in solutionQ30968724
Targeted elimination of zygotic messages in Xenopus laevis embryos by modified oligonucleotides possessing terminal cationic linkagesQ33688988
Morpholino antisense oligomers: the case for an RNase H-independent structural typeQ33901587
An introduction to peptide nucleic acid.Q34320896
Hydration of single-stranded phosphodiester and phosphorothioate oligodeoxyribonucleotidesQ34607425
The ups and downs of nucleic acid duplex stability: structure-stability studies on chemically-modified DNA:RNA duplexesQ34645854
A novel palindromic triple-stranded structure formed by homopyrimidine dodecamer d-CTTCTCCTCTTC and homopurine hexamer d-GAAGAG.Q34668950
Stability of triple helices containing RNA and DNA strands: experimental and molecular modeling studies.Q35016973
Sequence-specific recognition of double helical RNA and RNA.DNA by triple helix formationQ36264679
Inhibition of nuclear protein binding to the human Ki-ras promoter by triplex-forming oligonucleotidesQ38309986
Differential regulation of gene expression in vivo by triple helix-forming oligonucleotides as detected by a reporter enzyme.Q38312682
Using phosphorothioate-substituted RNA to investigate the thermodynamic role of phosphates in a sequence specific RNA-protein complexQ38316782
Analysis of promoter-specific repression by triple-helical DNA complexes in a eukaryotic cell-free transcription systemQ38331066
Antiparallel polypurine phosphorothioate oligonucleotides form stable triplexes with the rat alpha1(I) collagen gene promoter and inhibit transcription in cultured rat fibroblastsQ38345670
Bond order and charge localization in nucleoside phosphorothioatesQ39493502
Pyrimidine phosphorothioate oligonucleotides form triple-stranded helices and promote transcription inhibition.Q40230335
Analysis of oligo(deoxynucleoside phosphorothioate)s and their diastereomeric compositionQ40392939
Synthetic repeating sequence DNAs containing phosphorothioates: nuclease sensitivity and triplex formationQ40521820
Site-Specific Cleavage of Human Chromosome 4 Mediated by Triple-Helix FormationQ45293418
Phosphorothioate oligonucleotide-directed triple helix formation.Q46025323
Structural effect of complete [Rp]-phosphorothioate and phosphorodithioate substitutions in the DNA strand of a model antisense inhibitor-target RNA complexQ46157730
Structural study of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety by NMR: extraction of distance and torsion angle constraints and imino proton exchange ratesQ46501820
Stability and Properties of Double and Triple Helices: Dramatic Effects of RNA or DNA Backbone CompositionQ67464150
The influence of oligodeoxyribonucleotide phosphorothioate pyrimidine strands on triplex formationQ67593812
Structure and stability of the consecutive stereoregulated chiral phosphorothioate DNA duplexQ73248192
Stereodefined phosphorothioate analogues of DNA: relative thermodynamic stability of the model PS-DNA/DNA and PS-DNA/RNA complexesQ78345501
P433issue7
P407language of work or nameEnglishQ1860
P304page(s)2507-2515
P577publication date2007-01-11
P1433published inBiophysical JournalQ2032955
P1476titleUnusual thermal stability of RNA/[RP-PS]-DNA/RNA triplexes containing a homopurine DNA strand
P478volume92

Reverse relations

cites work (P2860)
Q46075672DNA oligonucleotides containing stereodefined phosphorothioate linkages in selected positions
Q39939619Hoogsteen-paired homopurine [RP-PS]-DNA and homopyrimidine RNA strands form a thermally stable parallel duplex
Q42175517LNA units present in the (2'-OMe)-RNA strand stabilize parallel duplexes (2'-OMe)-RNA/[All-R(P)-PS]-DNA and parallel triplexes (2'-OMe)-RNA/[All-R(P)-PS]-DNA/RNA. An improved tool for the inhibition of reverse transcription
Q37933197Phosphorothioate nucleotides and oligonucleotides - recent progress in synthesis and application
Q37896490Stereocontrolled synthesis of oligonucleotide analogs containing chiral internucleotidic phosphorus atoms.
Q51699169Understanding the chemical mechanisms of life.

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